Wall clock time and date at job start Tue Mar 31 2020 05:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47359 * 2 1 4 4 C 1.52999 * 109.47094 * 119.99857 * 2 1 3 5 5 C 1.50703 * 109.47285 * 295.00003 * 4 2 1 6 6 H 1.07999 * 119.99683 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00134 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99745 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99992 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47388 * 89.99914 * 9 7 5 11 11 H 1.48497 * 109.47349 * 209.99736 * 9 7 5 12 12 H 1.48503 * 109.47218 * 330.00088 * 9 7 5 13 13 C 1.52997 * 109.47084 * 239.99642 * 2 1 3 14 14 N 1.46904 * 109.46950 * 65.00406 * 13 2 1 15 15 C 1.46899 * 111.00029 * 180.02562 * 14 13 2 16 16 C 1.52997 * 109.47254 * 179.97438 * 15 14 13 17 17 C 1.53006 * 109.47127 * 300.00134 * 16 15 14 18 18 C 1.52999 * 109.47317 * 59.99645 * 16 15 14 19 19 C 1.50697 * 109.47466 * 179.97438 * 16 15 14 20 20 C 1.33386 * 125.20640 * 179.97438 * 19 16 15 21 21 C 1.38422 * 114.92351 * 179.97438 * 20 19 16 22 22 C 1.33395 * 114.91902 * 0.02562 * 21 20 19 23 23 S 1.75885 * 125.19934 * 359.69621 * 19 16 15 24 24 H 1.08994 * 109.47001 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46913 * 300.00581 * 1 2 3 26 26 H 1.08999 * 109.46932 * 59.99533 * 1 2 3 27 27 H 1.09001 * 109.47177 * 54.99627 * 4 2 1 28 28 H 1.08998 * 109.47319 * 175.00012 * 4 2 1 29 29 H 0.96996 * 119.99479 * 180.02562 * 8 7 5 30 30 H 1.08995 * 109.47319 * 305.00335 * 13 2 1 31 31 H 1.09003 * 109.47435 * 184.99660 * 13 2 1 32 32 H 1.00908 * 110.99583 * 303.94989 * 14 13 2 33 33 H 1.09002 * 109.47043 * 299.99792 * 15 14 13 34 34 H 1.09001 * 109.47354 * 59.99854 * 15 14 13 35 35 H 1.08993 * 109.46955 * 60.00011 * 17 16 15 36 36 H 1.09000 * 109.47050 * 179.97438 * 17 16 15 37 37 H 1.09001 * 109.47002 * 299.99574 * 17 16 15 38 38 H 1.09002 * 109.46716 * 60.00091 * 18 16 15 39 39 H 1.09000 * 109.47486 * 180.02562 * 18 16 15 40 40 H 1.09001 * 109.47362 * 300.00732 * 18 16 15 41 41 H 1.07999 * 122.54171 * 359.96488 * 20 19 16 42 42 H 1.08000 * 122.53889 * 180.02562 * 21 20 19 43 43 H 1.08000 * 125.19750 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0800 0.9742 2.3757 7 6 1.9933 -0.4016 3.7283 8 7 2.6764 -1.5187 3.8512 9 14 1.4997 0.5635 5.2496 10 1 0.1726 0.0955 5.7238 11 1 2.5093 0.3537 6.3181 12 1 1.4248 2.0087 4.9162 13 6 2.0400 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.1247 -0.6272 -3.6672 16 6 1.7014 0.1902 -4.8892 17 6 0.1757 0.2992 -4.9264 18 6 2.3107 1.5909 -4.8019 19 6 2.1875 -0.4912 -6.1424 20 6 1.9910 -0.0473 -7.3848 21 6 2.5316 -0.8423 -8.3806 22 6 3.1667 -1.9323 -7.9469 23 16 3.1068 -1.9900 -6.1900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.6053 -1.7198 1.2952 28 1 3.1263 -0.7995 1.2056 29 1 2.9237 -1.8415 4.7318 30 1 1.6054 -1.7198 -1.2951 31 1 3.1264 -0.7995 -1.2056 32 1 0.6528 0.1792 -2.4753 33 1 3.2116 -0.7052 -3.6405 34 1 1.6903 -1.6250 -3.7297 35 1 -0.1754 0.7923 -4.0200 36 1 -0.1258 0.8819 -5.7968 37 1 -0.2584 -0.6987 -4.9886 38 1 3.3976 1.5133 -4.7755 39 1 2.0087 2.1735 -5.6723 40 1 1.9595 2.0841 -3.8955 41 1 1.4508 0.8634 -7.5977 42 1 2.4456 -0.5987 -9.4293 43 1 3.6483 -2.6646 -8.5780 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602554045.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:36 Heat of formation + Delta-G solvation = 4.225390 kcal Electronic energy + Delta-G solvation = -19654.211379 eV Core-core repulsion = 16824.906178 eV Total energy + Delta-G solvation = -2829.305201 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.06945 -37.26273 -35.64176 -33.09000 -31.52588 -28.68324 -27.34737 -27.09017 -26.28840 -24.96225 -23.70486 -22.16400 -20.10586 -18.98298 -18.95549 -17.12430 -16.35556 -15.79109 -15.55029 -14.67478 -14.58756 -14.23858 -14.03564 -13.60668 -13.26637 -13.06788 -12.64738 -12.58949 -12.52370 -12.19581 -12.00720 -11.91050 -11.65755 -11.39921 -11.32756 -11.07677 -11.02282 -10.85234 -10.74326 -10.53595 -10.30777 -10.16428 -9.70260 -9.13821 -8.94608 -8.76653 -8.62472 -8.31543 -8.12620 -5.96194 -3.97272 0.87228 1.49889 1.89300 2.60177 3.33889 3.40323 3.43715 4.22944 4.49416 4.64072 4.77295 4.89628 4.91209 5.11004 5.34700 5.39636 5.40156 5.56010 5.57392 5.65385 5.78079 5.82830 5.85888 5.86970 5.88197 6.01286 6.06200 6.13471 6.20862 6.27390 6.32021 6.37890 6.47642 6.57112 6.94640 7.11535 7.18533 7.36116 7.64928 7.71880 7.87823 8.04268 8.47962 9.09165 9.66048 11.15391 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.038322 B = 0.002910 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.474899 B = 9618.310423 C =10031.618391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.083 4.083 3 H 0.066 0.934 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.064 3.936 14 N -0.684 5.684 15 C 0.062 3.938 16 C 0.007 3.993 17 C -0.139 4.139 18 C -0.126 4.126 19 C -0.151 4.151 20 C -0.147 4.147 21 C -0.132 4.132 22 C -0.228 4.228 23 S 0.102 5.898 24 H 0.040 0.960 25 H 0.062 0.938 26 H 0.031 0.969 27 H 0.014 0.986 28 H 0.015 0.985 29 H 0.259 0.741 30 H 0.023 0.977 31 H 0.067 0.933 32 H 0.338 0.662 33 H 0.073 0.927 34 H 0.029 0.971 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.048 0.952 40 H 0.078 0.922 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.875 1.457 -24.171 24.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.102 4.102 3 H 0.084 0.916 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.065 4.065 14 N -0.317 5.317 15 C -0.068 4.068 16 C 0.005 3.995 17 C -0.197 4.197 18 C -0.184 4.184 19 C -0.269 4.269 20 C -0.177 4.177 21 C -0.163 4.163 22 C -0.364 4.364 23 S 0.367 5.633 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.050 0.950 27 H 0.032 0.968 28 H 0.033 0.967 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.158 0.842 33 H 0.092 0.908 34 H 0.048 0.952 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.097 0.903 41 H 0.155 0.845 42 H 0.153 0.847 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.682 0.731 -22.934 22.956 hybrid contribution -1.266 0.467 -0.345 1.392 sum -1.947 1.198 -23.279 23.391 Atomic orbital electron populations 1.21743 0.96740 1.00419 1.00224 1.21216 0.94803 1.00103 0.94114 0.91596 1.19110 0.96147 0.95354 0.90365 1.21238 1.34555 1.08278 0.90984 0.92567 1.25024 0.95342 0.95114 0.99104 1.69968 1.39083 1.21285 1.23351 0.86631 0.78174 0.80464 0.82959 1.20777 1.21312 1.19884 1.22149 1.00411 0.94452 0.89480 1.60622 1.19707 1.50269 1.01096 1.22033 1.00742 0.94554 0.89517 1.19152 0.95771 0.95647 0.88974 1.21916 0.93328 1.01993 1.02507 1.21765 1.00677 0.93678 1.02264 1.24649 1.04526 0.99110 0.98585 1.20008 1.04299 1.02167 0.91191 1.20134 1.00453 0.95096 1.00579 1.25648 1.08834 1.03870 0.97999 1.84486 1.53410 1.22621 1.02773 0.94044 0.91849 0.95038 0.96786 0.96657 0.93110 0.95837 0.91458 0.84160 0.90811 0.95246 0.91240 0.92220 0.92678 0.92703 0.93244 0.90316 0.84540 0.84655 0.82239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 8.77 37.16 0.33 -2.15 16 2 C -0.08 -1.70 2.55 -90.62 -0.23 -1.93 16 3 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.35 8.41 -34.44 -0.29 -14.64 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 9 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.06 1.10 5.14 -3.82 -0.02 1.08 16 14 N -0.68 -9.82 5.71 -113.78 -0.65 -10.47 16 15 C 0.06 0.78 3.73 -3.83 -0.01 0.77 16 16 C 0.01 0.08 0.73 -155.66 -0.11 -0.04 16 17 C -0.14 -1.35 8.01 37.16 0.30 -1.05 16 18 C -0.13 -1.34 8.18 37.16 0.30 -1.03 16 19 C -0.15 -1.60 5.13 -36.01 -0.18 -1.79 16 20 C -0.15 -1.41 9.31 -41.21 -0.38 -1.80 16 21 C -0.13 -1.17 10.18 -41.21 -0.42 -1.59 16 22 C -0.23 -2.07 11.23 29.04 0.33 -1.75 16 23 S 0.10 1.07 21.84 -107.50 -2.35 -1.27 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 26 H 0.03 0.48 6.68 -51.93 -0.35 0.13 16 27 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.34 4.56 5.02 -39.29 -0.20 4.36 16 33 H 0.07 0.99 7.95 -51.93 -0.41 0.58 16 34 H 0.03 0.38 7.97 -51.93 -0.41 -0.03 16 35 H 0.07 0.67 6.57 -51.93 -0.34 0.33 16 36 H 0.06 0.51 7.94 -51.93 -0.41 0.10 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.46 7.94 -51.93 -0.41 0.04 16 40 H 0.08 0.90 7.60 -51.93 -0.39 0.51 16 41 H 0.14 1.12 8.01 -52.49 -0.42 0.70 16 42 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 352.21 15.07 5.31 5.31 Total: -1.00 -29.60 352.21 -10.04 -39.65 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -7.45 Total: 0.26 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: -0.62 Total: -23.84 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.09 Total: -36.84 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.35 Total: -1.27 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.60 -10.04 -39.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602554045.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.871 kcal (2) G-P(sol) polarization free energy of solvation -29.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds