Wall clock time and date at job start Tue Mar 31 2020 05:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47359 * 2 1 4 4 C 1.52999 * 109.47094 * 119.99857 * 2 1 3 5 5 C 1.50703 * 109.47285 * 295.00003 * 4 2 1 6 6 H 1.07999 * 119.99683 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00134 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99745 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99992 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47388 * 89.99914 * 9 7 5 11 11 H 1.48497 * 109.47349 * 209.99736 * 9 7 5 12 12 H 1.48503 * 109.47218 * 330.00088 * 9 7 5 13 13 C 1.52997 * 109.47084 * 239.99642 * 2 1 3 14 14 N 1.46904 * 109.46950 * 65.00406 * 13 2 1 15 15 C 1.46899 * 111.00029 * 180.02562 * 14 13 2 16 16 C 1.52997 * 109.47254 * 179.97438 * 15 14 13 17 17 C 1.53006 * 109.47127 * 300.00134 * 16 15 14 18 18 C 1.52999 * 109.47317 * 59.99645 * 16 15 14 19 19 C 1.50697 * 109.47466 * 179.97438 * 16 15 14 20 20 C 1.33386 * 125.20640 * 179.97438 * 19 16 15 21 21 C 1.38422 * 114.92351 * 179.97438 * 20 19 16 22 22 C 1.33395 * 114.91902 * 0.02562 * 21 20 19 23 23 S 1.75885 * 125.19934 * 359.69621 * 19 16 15 24 24 H 1.08994 * 109.47001 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46913 * 300.00581 * 1 2 3 26 26 H 1.08999 * 109.46932 * 59.99533 * 1 2 3 27 27 H 1.09001 * 109.47177 * 54.99627 * 4 2 1 28 28 H 1.08998 * 109.47319 * 175.00012 * 4 2 1 29 29 H 0.96996 * 119.99479 * 180.02562 * 8 7 5 30 30 H 1.08995 * 109.47319 * 305.00335 * 13 2 1 31 31 H 1.09003 * 109.47435 * 184.99660 * 13 2 1 32 32 H 1.00908 * 110.99583 * 303.94989 * 14 13 2 33 33 H 1.09002 * 109.47043 * 299.99792 * 15 14 13 34 34 H 1.09001 * 109.47354 * 59.99854 * 15 14 13 35 35 H 1.08993 * 109.46955 * 60.00011 * 17 16 15 36 36 H 1.09000 * 109.47050 * 179.97438 * 17 16 15 37 37 H 1.09001 * 109.47002 * 299.99574 * 17 16 15 38 38 H 1.09002 * 109.46716 * 60.00091 * 18 16 15 39 39 H 1.09000 * 109.47486 * 180.02562 * 18 16 15 40 40 H 1.09001 * 109.47362 * 300.00732 * 18 16 15 41 41 H 1.07999 * 122.54171 * 359.96488 * 20 19 16 42 42 H 1.08000 * 122.53889 * 180.02562 * 21 20 19 43 43 H 1.08000 * 125.19750 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0800 0.9742 2.3757 7 6 1.9933 -0.4016 3.7283 8 7 2.6764 -1.5187 3.8512 9 14 1.4997 0.5635 5.2496 10 1 0.1726 0.0955 5.7238 11 1 2.5093 0.3537 6.3181 12 1 1.4248 2.0087 4.9162 13 6 2.0400 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.1247 -0.6272 -3.6672 16 6 1.7014 0.1902 -4.8892 17 6 0.1757 0.2992 -4.9264 18 6 2.3107 1.5909 -4.8019 19 6 2.1875 -0.4912 -6.1424 20 6 1.9910 -0.0473 -7.3848 21 6 2.5316 -0.8423 -8.3806 22 6 3.1667 -1.9323 -7.9469 23 16 3.1068 -1.9900 -6.1900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.6053 -1.7198 1.2952 28 1 3.1263 -0.7995 1.2056 29 1 2.9237 -1.8415 4.7318 30 1 1.6054 -1.7198 -1.2951 31 1 3.1264 -0.7995 -1.2056 32 1 0.6528 0.1792 -2.4753 33 1 3.2116 -0.7052 -3.6405 34 1 1.6903 -1.6250 -3.7297 35 1 -0.1754 0.7923 -4.0200 36 1 -0.1258 0.8819 -5.7968 37 1 -0.2584 -0.6987 -4.9886 38 1 3.3976 1.5133 -4.7755 39 1 2.0087 2.1735 -5.6723 40 1 1.9595 2.0841 -3.8955 41 1 1.4508 0.8634 -7.5977 42 1 2.4456 -0.5987 -9.4293 43 1 3.6483 -2.6646 -8.5780 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602554045.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:36 Heat of formation + Delta-G solvation = -11.264523 kcal Electronic energy + Delta-G solvation = -19654.883072 eV Core-core repulsion = 16824.906178 eV Total energy + Delta-G solvation = -2829.976894 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.95465 -38.39227 -36.93397 -34.87164 -33.17018 -29.49296 -28.93623 -28.12801 -27.57493 -26.28709 -24.84108 -23.77165 -21.04437 -20.59849 -19.67956 -18.58590 -17.86309 -16.91752 -16.65169 -16.42207 -15.62825 -15.47354 -15.28224 -14.60410 -14.50230 -14.42167 -13.94084 -13.72023 -13.52815 -13.37654 -13.22912 -13.08902 -12.89491 -12.73263 -12.71544 -12.54214 -12.22227 -12.17249 -12.00683 -11.93278 -11.75371 -11.49315 -11.36522 -11.06038 -10.89039 -10.52899 -9.50719 -9.45148 -9.30835 -8.16806 -6.25934 0.14467 0.74843 1.16699 1.40753 1.41883 1.52939 1.90617 2.42667 3.14346 3.16769 3.76673 3.82924 3.98019 4.22054 4.26420 4.27953 4.30589 4.46132 4.60585 4.67440 4.70453 4.73975 4.78879 4.86379 4.88347 5.01019 5.03416 5.04661 5.10747 5.23836 5.26712 5.36894 5.39259 5.43952 5.49311 5.51713 5.56588 5.64910 5.80434 5.89948 6.03712 6.31425 6.49711 6.90309 7.42381 8.95452 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.038322 B = 0.002910 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.474899 B = 9618.310423 C =10031.618391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.074 4.074 3 H 0.059 0.941 4 C 0.032 3.968 5 C -0.527 4.527 6 H 0.063 0.937 7 C -0.004 4.004 8 N -0.937 5.937 9 Si 0.962 3.038 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.263 1.263 13 C 0.076 3.924 14 N -0.678 5.678 15 C 0.066 3.934 16 C 0.014 3.986 17 C -0.137 4.137 18 C -0.122 4.122 19 C -0.165 4.165 20 C -0.143 4.143 21 C -0.137 4.137 22 C -0.224 4.224 23 S 0.058 5.942 24 H 0.039 0.961 25 H 0.047 0.953 26 H 0.068 0.932 27 H -0.012 1.012 28 H -0.015 1.015 29 H 0.261 0.739 30 H 0.021 0.979 31 H 0.054 0.946 32 H 0.347 0.653 33 H 0.062 0.938 34 H 0.026 0.974 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.051 0.949 38 H 0.043 0.957 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.154 0.846 42 H 0.161 0.839 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.178 2.920 -25.810 26.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.093 4.093 3 H 0.078 0.922 4 C -0.005 4.005 5 C -0.565 4.565 6 H 0.081 0.919 7 C -0.201 4.201 8 N -0.578 5.578 9 Si 0.786 3.214 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.187 1.187 13 C -0.053 4.053 14 N -0.311 5.311 15 C -0.064 4.064 16 C 0.011 3.989 17 C -0.196 4.196 18 C -0.180 4.180 19 C -0.283 4.283 20 C -0.173 4.173 21 C -0.167 4.167 22 C -0.359 4.359 23 S 0.323 5.677 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.007 0.993 28 H 0.003 0.997 29 H 0.070 0.930 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.168 0.832 33 H 0.080 0.920 34 H 0.044 0.956 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.172 0.828 42 H 0.179 0.821 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -1.999 2.206 -24.593 24.773 hybrid contribution -0.820 -0.017 0.075 0.823 sum -2.818 2.190 -24.518 24.776 Atomic orbital electron populations 1.21655 0.94862 1.00635 1.01248 1.21001 0.96284 0.99036 0.92940 0.92243 1.19008 0.94144 0.94570 0.92811 1.21645 1.34322 1.08579 0.91988 0.91928 1.25972 0.95278 0.96127 1.02727 1.70110 1.40362 1.23059 1.24247 0.85495 0.77974 0.79320 0.78566 1.19826 1.21037 1.18684 1.21843 0.99507 0.94235 0.89725 1.60529 1.20331 1.49701 1.00574 1.22018 1.00006 0.94799 0.89622 1.19058 0.96610 0.95185 0.88016 1.21913 0.92212 1.02128 1.03302 1.21731 0.99914 0.93746 1.02647 1.24627 1.05522 0.99225 0.98909 1.20287 1.03614 1.02570 0.90811 1.20454 0.99809 0.94653 1.01751 1.25920 1.08753 1.04507 0.96746 1.84650 1.54391 1.23633 1.05049 0.94225 0.93432 0.91339 0.99325 0.99669 0.92980 0.96123 0.92726 0.83225 0.91973 0.95568 0.91174 0.90615 0.92996 0.93828 0.91459 0.91179 0.82842 0.82138 0.80270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.55 8.77 71.98 0.63 -3.92 16 2 C -0.07 -3.02 2.55 -10.79 -0.03 -3.05 16 3 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 4 C 0.03 1.72 4.45 29.85 0.13 1.85 16 5 C -0.53 -29.99 8.41 25.60 0.22 -29.77 16 6 H 0.06 3.41 7.06 -2.91 -0.02 3.39 16 7 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 8 N -0.94 -57.93 13.29 21.45 0.28 -57.64 16 9 Si 0.96 44.75 29.54 68.60 2.03 46.78 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 12 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 13 C 0.08 2.68 5.14 86.30 0.44 3.12 16 14 N -0.68 -18.95 5.71 -513.89 -2.94 -21.89 16 15 C 0.07 1.64 3.73 86.30 0.32 1.96 16 16 C 0.01 0.28 0.73 -52.93 -0.04 0.24 16 17 C -0.14 -2.36 8.01 71.98 0.58 -1.78 16 18 C -0.12 -2.41 8.18 71.98 0.59 -1.82 16 19 C -0.17 -3.27 5.13 24.59 0.13 -3.15 16 20 C -0.14 -2.39 9.31 21.22 0.20 -2.19 16 21 C -0.14 -2.06 10.18 21.22 0.22 -1.85 16 22 C -0.22 -3.66 11.23 66.72 0.75 -2.91 16 23 S 0.06 1.20 21.84 -56.49 -1.23 -0.03 16 24 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.05 1.85 6.95 -2.38 -0.02 1.83 16 26 H 0.07 1.94 6.68 -2.39 -0.02 1.93 16 27 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 28 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 29 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 30 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.35 8.72 5.02 -89.69 -0.45 8.27 16 33 H 0.06 1.70 7.95 -2.39 -0.02 1.68 16 34 H 0.03 0.68 7.97 -2.39 -0.02 0.66 16 35 H 0.07 1.19 6.57 -2.39 -0.02 1.17 16 36 H 0.07 1.06 7.94 -2.39 -0.02 1.04 16 37 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.04 0.94 8.14 -2.39 -0.02 0.93 16 39 H 0.07 1.07 7.94 -2.39 -0.02 1.05 16 40 H 0.07 1.50 7.60 -2.39 -0.02 1.48 16 41 H 0.15 1.99 8.01 -2.91 -0.02 1.97 16 42 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 43 H 0.18 2.09 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -64.46 352.21 3.25 -61.21 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.51 Total: 14.61 kcal Atomic # 6 Polarization: -47.63 SS G_CDS: 4.59 Total: -43.04 kcal Atomic # 7 Polarization: -76.88 SS G_CDS: -2.65 Total: -79.53 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -1.23 Total: -0.03 kcal Total: -64.46 3.25 -61.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602554045.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.949 kcal (2) G-P(sol) polarization free energy of solvation -64.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds