Wall clock time and date at job start Tue Mar 31 2020 05:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33386 * 125.20043 * 2 1 4 4 C 1.38432 * 114.91918 * 179.97438 * 3 2 1 5 5 C 1.33386 * 114.92087 * 0.02562 * 4 3 2 6 6 C 1.50695 * 125.20514 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47178 * 89.99513 * 6 5 4 8 8 H 1.08998 * 109.47384 * 305.00464 * 7 6 5 9 9 C 1.53004 * 109.47388 * 185.00129 * 7 6 5 10 10 N 1.46898 * 109.47039 * 65.00450 * 7 6 5 11 11 C 1.46902 * 111.00287 * 204.99902 * 10 7 6 12 12 C 1.52994 * 109.47644 * 179.97438 * 11 10 7 13 13 H 1.09007 * 109.46663 * 55.00175 * 12 11 10 14 14 C 1.53000 * 109.47239 * 295.00358 * 12 11 10 15 15 C 1.52998 * 109.47468 * 174.99738 * 12 11 10 16 16 C 1.50702 * 109.47413 * 185.00179 * 15 12 11 17 17 H 1.08000 * 119.99631 * 0.02562 * 16 15 12 18 18 C 1.37880 * 119.99976 * 180.02562 * 16 15 12 19 19 N 1.31516 * 120.00099 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99863 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47011 * 59.99261 * 20 18 16 22 22 H 1.48492 * 109.47049 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46884 * 299.99889 * 20 18 16 24 24 S 1.75882 * 125.20464 * 179.69172 * 2 1 3 25 25 H 1.09002 * 109.47152 * 90.00037 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.00137 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.00118 * 1 2 3 28 28 H 1.07997 * 122.54296 * 359.95309 * 3 2 1 29 29 H 1.08001 * 122.53810 * 179.97438 * 4 3 2 30 30 H 1.08999 * 109.47231 * 209.99979 * 6 5 4 31 31 H 1.09000 * 109.47136 * 329.99696 * 6 5 4 32 32 H 1.08995 * 109.47278 * 180.02562 * 9 7 6 33 33 H 1.08998 * 109.47131 * 300.00489 * 9 7 6 34 34 H 1.09007 * 109.46784 * 59.99880 * 9 7 6 35 35 H 1.00896 * 111.00524 * 81.04455 * 10 7 6 36 36 H 1.09002 * 109.46965 * 300.00582 * 11 10 7 37 37 H 1.09004 * 109.46891 * 59.99518 * 11 10 7 38 38 H 1.08995 * 109.47010 * 59.99542 * 14 12 11 39 39 H 1.09001 * 109.46924 * 179.97438 * 14 12 11 40 40 H 1.08998 * 109.47055 * 299.99486 * 14 12 11 41 41 H 1.08995 * 109.47252 * 305.00599 * 15 12 11 42 42 H 1.09007 * 109.46716 * 65.00525 * 15 12 11 43 43 H 0.96991 * 119.99548 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 0.0006 5 6 3.9751 -0.4477 0.0005 6 6 5.3860 -0.9770 0.0016 7 6 5.8623 -1.1565 1.4444 8 1 5.7506 -0.2158 1.9836 9 6 7.3342 -1.5744 1.4474 10 7 5.0570 -2.1954 2.1002 11 6 5.0419 -2.0084 3.5572 12 6 4.1949 -3.1063 4.2036 13 1 4.5684 -4.0827 3.8946 14 6 2.7383 -2.9540 3.7608 15 6 4.2802 -2.9864 5.7265 16 6 3.5474 -4.1391 6.3631 17 1 3.0689 -4.8831 5.7434 18 6 3.4877 -4.2438 7.7366 19 7 4.0707 -3.3381 8.4912 20 14 2.5798 -5.6730 8.5257 21 1 3.1999 -6.9518 8.0949 22 1 2.6626 -5.5565 10.0037 23 1 1.1557 -5.6473 8.1056 24 16 2.5210 -1.4371 0.0077 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5139 28 1 1.8669 2.0895 -0.0007 29 1 4.3721 1.6351 0.0002 30 1 5.4141 -1.9378 -0.5125 31 1 6.0393 -0.2713 -0.5115 32 1 7.6733 -1.7027 2.4753 33 1 7.4459 -2.5151 0.9082 34 1 7.9317 -0.8035 0.9607 35 1 5.3885 -3.1170 1.8574 36 1 6.0607 -2.0617 3.9409 37 1 4.6150 -1.0338 3.7940 38 1 2.6775 -3.0395 2.6759 39 1 2.1349 -3.7365 4.2210 40 1 2.3648 -1.9778 4.0698 41 1 5.3256 -3.0059 6.0344 42 1 3.8256 -2.0475 6.0430 43 1 4.0290 -3.4120 9.4574 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602556330.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:05 Heat of formation + Delta-G solvation = -2.243131 kcal Electronic energy + Delta-G solvation = -19865.907027 eV Core-core repulsion = 17036.321330 eV Total energy + Delta-G solvation = -2829.585697 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.34523 -37.24036 -35.04642 -32.71346 -31.90363 -29.96712 -28.29478 -26.67671 -25.17367 -24.45181 -22.71424 -22.32209 -20.88045 -19.01304 -18.52409 -16.82022 -16.27492 -15.29108 -15.10604 -14.62486 -14.45874 -14.33595 -13.90275 -13.39826 -13.30194 -12.96785 -12.85863 -12.60199 -12.28166 -12.09774 -12.01420 -11.79000 -11.45318 -11.34554 -11.25182 -11.17359 -10.84584 -10.81410 -10.71653 -10.43381 -10.23340 -10.18492 -9.64262 -9.08785 -8.91832 -8.29588 -8.29120 -8.17463 -7.94493 -5.94206 -3.95073 1.18986 1.84935 2.27195 2.89001 3.36420 3.40635 3.43279 4.40280 4.52847 4.77580 4.95395 5.05742 5.17780 5.28779 5.37651 5.41513 5.42401 5.48431 5.60786 5.70129 5.70576 5.77902 5.84466 5.90272 5.93267 6.04005 6.14156 6.25318 6.33138 6.45178 6.50896 6.63507 6.70405 6.78199 7.09398 7.26916 7.27043 7.44211 7.71109 7.75467 7.90743 8.06475 8.50783 9.11209 9.68000 11.17378 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.017945 B = 0.004110 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.984682 B = 6810.491997 C = 7849.896570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.201 4.201 3 C -0.141 4.141 4 C -0.156 4.156 5 C -0.149 4.149 6 C -0.038 4.038 7 C 0.086 3.914 8 H 0.078 0.922 9 C -0.181 4.181 10 N -0.678 5.678 11 C 0.068 3.932 12 C -0.081 4.081 13 H 0.052 0.948 14 C -0.121 4.121 15 C 0.028 3.972 16 C -0.511 4.511 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.889 3.111 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.277 1.277 24 S 0.142 5.858 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.336 0.664 36 H 0.023 0.977 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.050 0.950 40 H 0.037 0.963 41 H 0.011 0.989 42 H 0.015 0.985 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.197 7.318 -20.043 21.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.319 4.319 3 C -0.172 4.172 4 C -0.186 4.186 5 C -0.267 4.267 6 C -0.078 4.078 7 C -0.025 4.025 8 H 0.096 0.904 9 C -0.241 4.241 10 N -0.308 5.308 11 C -0.061 4.061 12 C -0.100 4.100 13 H 0.070 0.930 14 C -0.179 4.179 15 C -0.010 4.010 16 C -0.550 4.550 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 S 0.407 5.593 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.154 0.846 36 H 0.041 0.959 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.029 0.971 42 H 0.033 0.967 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.671 6.141 -19.939 20.874 hybrid contribution 0.796 0.596 0.980 1.396 sum 0.125 6.737 -18.959 20.121 Atomic orbital electron populations 1.20280 0.88422 1.03048 1.02110 1.24517 0.99876 0.96796 1.10685 1.19916 0.92995 0.98790 1.05493 1.19924 0.96011 0.95823 1.06852 1.24222 0.98740 0.96105 1.07635 1.20197 0.89811 1.00849 0.96919 1.21561 0.90116 0.96739 0.94115 0.90391 1.22503 0.97594 1.01617 1.02340 1.60615 1.55342 1.05218 1.09674 1.22127 0.98102 1.00501 0.85355 1.21176 0.94787 0.95756 0.98257 0.92999 1.21584 0.96382 1.00675 0.99240 1.19109 0.96717 0.97124 0.88007 1.21207 1.33364 1.09214 0.91185 0.92656 1.25015 0.95804 0.96148 0.97554 1.69958 1.44415 1.34751 1.04639 0.86705 0.80425 0.83028 0.78118 1.20341 1.21395 1.20271 1.84307 0.95544 1.08189 1.71212 0.91311 0.90979 0.91355 0.85311 0.85254 0.90981 0.90346 0.92208 0.92484 0.92385 0.84640 0.95904 0.91811 0.93521 0.93072 0.94406 0.97076 0.96674 0.93098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.38 36.01 0.37 -0.41 16 2 C -0.20 -2.47 6.51 -36.00 -0.23 -2.70 16 3 C -0.14 -1.70 10.05 -41.21 -0.41 -2.12 16 4 C -0.16 -1.88 10.05 -41.21 -0.41 -2.29 16 5 C -0.15 -1.83 5.49 -36.01 -0.20 -2.03 16 6 C -0.04 -0.40 5.39 -27.89 -0.15 -0.55 16 7 C 0.09 1.01 2.58 -67.71 -0.17 0.83 16 8 H 0.08 1.01 7.80 -51.93 -0.40 0.61 16 9 C -0.18 -1.86 9.16 37.16 0.34 -1.52 16 10 N -0.68 -9.48 5.42 -106.73 -0.58 -10.06 16 11 C 0.07 1.17 4.87 -3.83 -0.02 1.15 16 12 C -0.08 -1.66 2.48 -90.62 -0.22 -1.89 16 13 H 0.05 1.08 8.14 -51.92 -0.42 0.65 16 14 C -0.12 -2.41 8.89 37.16 0.33 -2.08 16 15 C 0.03 0.73 4.45 -27.88 -0.12 0.60 16 16 C -0.51 -14.49 8.41 -34.44 -0.29 -14.78 16 17 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 20 Si 0.89 21.94 29.54 -169.99 -5.02 16.91 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 S 0.14 1.83 23.31 -107.50 -2.51 -0.68 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 29 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.69 7.45 -51.93 -0.39 0.30 16 33 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 34 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 35 H 0.34 4.50 8.47 -39.29 -0.33 4.16 16 36 H 0.02 0.40 7.44 -51.93 -0.39 0.01 16 37 H 0.06 1.17 8.06 -51.93 -0.42 0.76 16 38 H 0.05 0.83 7.75 -51.93 -0.40 0.42 16 39 H 0.05 1.09 6.95 -51.93 -0.36 0.73 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.01 0.42 8.14 -51.92 -0.42 0.00 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 361.99 15.07 5.46 5.46 Total: -1.00 -30.25 361.99 -10.90 -41.15 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -7.69 Total: 0.09 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: -1.29 Total: -26.29 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.16 Total: -36.64 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.51 Total: -0.68 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.25 -10.90 -41.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602556330.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.911 kcal (2) G-P(sol) polarization free energy of solvation -30.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds