Wall clock time and date at job start Tue Mar 31 2020 05:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33387 * 125.20906 * 2 1 4 4 C 1.38424 * 114.92317 * 179.75013 * 3 2 1 5 5 C 1.33380 * 114.91979 * 0.43559 * 4 3 2 6 6 C 1.50706 * 125.20446 * 179.85799 * 5 4 3 7 7 C 1.52998 * 109.47222 * 89.71318 * 6 5 4 8 8 H 1.09002 * 109.46576 * 55.00142 * 7 6 5 9 9 C 1.52996 * 109.47332 * 175.00098 * 7 6 5 10 10 N 1.46899 * 109.47069 * 295.00619 * 7 6 5 11 11 C 1.46905 * 110.99567 * 155.00078 * 10 7 6 12 12 C 1.53002 * 109.46864 * 179.97438 * 11 10 7 13 13 H 1.08993 * 109.47457 * 304.99969 * 12 11 10 14 14 C 1.53006 * 109.47040 * 64.99984 * 12 11 10 15 15 C 1.52998 * 109.47452 * 184.99547 * 12 11 10 16 16 C 1.50696 * 109.47465 * 175.00097 * 15 12 11 17 17 H 1.08001 * 120.00121 * 0.02562 * 16 15 12 18 18 C 1.37875 * 120.00227 * 180.02562 * 16 15 12 19 19 N 1.31512 * 119.99807 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00335 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46820 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47100 * 119.99445 * 20 18 16 23 23 H 1.48498 * 109.47071 * 240.00019 * 20 18 16 24 24 S 1.75886 * 125.19813 * 179.97438 * 2 1 3 25 25 H 1.08996 * 109.47717 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46588 * 299.99788 * 1 2 3 27 27 H 1.09001 * 109.46952 * 59.99099 * 1 2 3 28 28 H 1.08004 * 122.53389 * 359.97438 * 3 2 1 29 29 H 1.08001 * 122.53885 * 180.27109 * 4 3 2 30 30 H 1.09003 * 109.47012 * 209.71858 * 6 5 4 31 31 H 1.09004 * 109.46428 * 329.71600 * 6 5 4 32 32 H 1.09001 * 109.47473 * 180.02562 * 9 7 6 33 33 H 1.09001 * 109.47302 * 300.00480 * 9 7 6 34 34 H 1.09003 * 109.46679 * 59.99963 * 9 7 6 35 35 H 1.00900 * 110.99876 * 278.94837 * 10 7 6 36 36 H 1.09003 * 109.47015 * 299.99062 * 11 10 7 37 37 H 1.08995 * 109.47491 * 59.99609 * 11 10 7 38 38 H 1.08999 * 109.47402 * 59.99791 * 14 12 11 39 39 H 1.08999 * 109.46933 * 180.02562 * 14 12 11 40 40 H 1.09002 * 109.46796 * 299.99955 * 14 12 11 41 41 H 1.08997 * 109.47319 * 295.00615 * 15 12 11 42 42 H 1.09006 * 109.46570 * 55.00084 * 15 12 11 43 43 H 0.97004 * 119.99842 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0898 0.0000 4 6 3.6380 0.8427 0.0055 5 6 3.9750 -0.4478 0.0007 6 6 5.3860 -0.9773 0.0020 7 6 5.8624 -1.1560 1.4449 8 1 5.1593 -1.7913 1.9835 9 6 7.2458 -1.8094 1.4480 10 7 5.9390 0.1559 2.1013 11 6 5.8041 0.0242 3.5582 12 6 5.8893 1.4080 4.2054 13 1 6.8131 1.8972 3.8969 14 6 4.6926 2.2525 3.7628 15 6 5.8741 1.2607 5.7282 16 6 6.0811 2.6105 6.3655 17 1 6.2102 3.4859 5.7464 18 6 6.1058 2.7278 7.7391 19 7 5.9481 1.6618 8.4930 20 14 6.3632 4.4008 8.5292 21 1 6.5145 5.4305 7.4698 22 1 5.1913 4.7325 9.3788 23 1 7.5889 4.3692 9.3668 24 16 2.5208 -1.4373 0.0006 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5140 -0.8899 28 1 1.8670 2.0894 -0.0004 29 1 4.3722 1.6348 0.0104 30 1 5.4139 -1.9384 -0.5116 31 1 6.0392 -0.2718 -0.5116 32 1 7.5851 -1.9372 2.4760 33 1 7.1890 -2.7829 0.9609 34 1 7.9489 -1.1741 0.9093 35 1 6.7949 0.6321 1.8590 36 1 4.8414 -0.4291 3.7945 37 1 6.6064 -0.6060 3.9419 38 1 3.7687 1.7633 4.0713 39 1 4.7535 3.2385 4.2235 40 1 4.7034 2.3575 2.6779 41 1 4.9139 0.8531 6.0442 42 1 6.6738 0.5870 6.0360 43 1 5.9650 1.7444 9.4594 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602556331.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:09 Heat of formation + Delta-G solvation = -2.273593 kcal Electronic energy + Delta-G solvation = -19820.917461 eV Core-core repulsion = 16991.330443 eV Total energy + Delta-G solvation = -2829.587018 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -38.37851 -37.19475 -35.06395 -32.71530 -31.92844 -30.00774 -28.29736 -26.69206 -25.12445 -24.54198 -22.72759 -22.29165 -20.83099 -19.05057 -18.61523 -16.76747 -16.32317 -15.36207 -15.05288 -14.65511 -14.45035 -14.34616 -13.93782 -13.42763 -13.30592 -13.03301 -12.86854 -12.60858 -12.31220 -12.13946 -12.02684 -11.66301 -11.49426 -11.41689 -11.25462 -11.15779 -10.89432 -10.84066 -10.71082 -10.58067 -10.25279 -10.17924 -9.65633 -9.09856 -8.90779 -8.33755 -8.30685 -8.24300 -7.97916 -5.95277 -3.96087 1.15403 1.73126 2.11221 2.96568 3.33341 3.40854 3.45021 4.40474 4.52445 4.75500 4.90569 5.05902 5.19995 5.28428 5.31074 5.40665 5.43358 5.46547 5.60035 5.68956 5.72737 5.79403 5.86074 5.90597 5.93600 6.06736 6.13600 6.24175 6.35953 6.48981 6.51932 6.62626 6.73047 6.75520 7.08004 7.24295 7.25606 7.44362 7.71272 7.75808 7.89813 8.05541 8.49843 9.10676 9.67207 11.16349 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018882 B = 0.003819 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.508015 B = 7329.642088 C = 8227.278738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.187 4.187 3 C -0.134 4.134 4 C -0.113 4.113 5 C -0.152 4.152 6 C -0.036 4.036 7 C 0.086 3.914 8 H 0.076 0.924 9 C -0.182 4.182 10 N -0.676 5.676 11 C 0.067 3.933 12 C -0.081 4.081 13 H 0.052 0.948 14 C -0.119 4.119 15 C 0.027 3.973 16 C -0.510 4.510 17 H 0.056 0.944 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.889 3.111 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 S 0.064 5.936 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.134 0.866 29 H 0.139 0.861 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.335 0.665 36 H 0.063 0.937 37 H 0.022 0.978 38 H 0.037 0.963 39 H 0.051 0.949 40 H 0.042 0.958 41 H 0.015 0.985 42 H 0.011 0.989 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.147 -6.521 -20.079 21.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.304 4.304 3 C -0.165 4.165 4 C -0.142 4.142 5 C -0.268 4.268 6 C -0.076 4.076 7 C -0.025 4.025 8 H 0.094 0.906 9 C -0.241 4.241 10 N -0.306 5.306 11 C -0.062 4.062 12 C -0.100 4.100 13 H 0.070 0.930 14 C -0.177 4.177 15 C -0.010 4.010 16 C -0.549 4.549 17 H 0.074 0.926 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.717 3.283 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.211 1.211 24 S 0.327 5.673 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.151 0.849 29 H 0.156 0.844 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.153 0.847 36 H 0.082 0.918 37 H 0.041 0.959 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.033 0.967 42 H 0.030 0.970 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.121 -7.976 -19.994 22.380 hybrid contribution 1.309 1.980 1.010 2.579 sum -4.813 -5.996 -18.984 20.482 Atomic orbital electron populations 1.20280 0.88356 1.02455 1.02684 1.24306 0.99476 0.95546 1.11099 1.20070 0.93313 0.98952 1.04119 1.19955 0.95614 0.96108 1.02523 1.24143 0.97428 0.96107 1.09164 1.20185 0.90024 1.00518 0.96869 1.21541 0.95634 0.91160 0.94161 0.90604 1.22510 0.98105 1.01152 1.02350 1.60602 1.42500 1.17979 1.09474 1.22132 0.99877 0.98665 0.85486 1.21175 0.97875 0.92643 0.98279 0.92992 1.21554 0.97332 0.99839 0.98944 1.19120 0.96970 0.96948 0.88008 1.21280 1.48394 0.93996 0.91203 0.92552 1.25020 0.95623 0.96358 0.97580 1.69980 1.50895 1.28301 1.04546 0.86589 0.77662 0.84673 0.79407 1.19748 1.21094 1.21140 1.84070 0.97752 1.10470 1.74969 0.91847 0.90724 0.90977 0.84860 0.84373 0.91204 0.90131 0.92209 0.92423 0.92410 0.84677 0.91830 0.95941 0.94367 0.93043 0.93882 0.96654 0.97043 0.93201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.38 36.01 0.37 -0.34 16 2 C -0.19 -2.21 6.51 -36.00 -0.23 -2.45 16 3 C -0.13 -1.65 10.05 -41.21 -0.41 -2.06 16 4 C -0.11 -1.43 9.88 -41.21 -0.41 -1.84 16 5 C -0.15 -1.85 5.53 -36.00 -0.20 -2.05 16 6 C -0.04 -0.38 5.39 -27.88 -0.15 -0.53 16 7 C 0.09 1.02 2.57 -67.72 -0.17 0.85 16 8 H 0.08 1.01 7.80 -51.93 -0.40 0.61 16 9 C -0.18 -1.89 9.16 37.16 0.34 -1.55 16 10 N -0.68 -9.37 5.28 -106.72 -0.56 -9.94 16 11 C 0.07 1.16 4.87 -3.82 -0.02 1.14 16 12 C -0.08 -1.66 2.48 -90.62 -0.22 -1.88 16 13 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 14 C -0.12 -2.36 8.89 37.16 0.33 -2.03 16 15 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16 16 C -0.51 -14.45 8.41 -34.44 -0.29 -14.74 16 17 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 18 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 20 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 S 0.06 0.76 23.31 -107.50 -2.51 -1.74 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.13 1.45 8.06 -52.48 -0.42 1.02 16 29 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.70 7.45 -51.93 -0.39 0.31 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 35 H 0.34 4.41 8.47 -39.29 -0.33 4.08 16 36 H 0.06 1.18 8.06 -51.93 -0.42 0.76 16 37 H 0.02 0.40 7.44 -51.93 -0.39 0.01 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 1.09 6.95 -51.93 -0.36 0.73 16 40 H 0.04 0.76 7.75 -51.93 -0.40 0.35 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 361.71 15.07 5.45 5.45 Total: -1.00 -30.15 361.71 -10.89 -41.03 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -7.69 Total: 0.29 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: -1.29 Total: -25.42 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.17 Total: -36.49 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.51 Total: -1.74 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.15 -10.89 -41.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602556331.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.760 kcal (2) G-P(sol) polarization free energy of solvation -30.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds