Wall clock time and date at job start Tue Mar 31 2020 05:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33387 * 125.20906 * 2 1 4 4 C 1.38424 * 114.92317 * 179.75013 * 3 2 1 5 5 C 1.33380 * 114.91979 * 0.43559 * 4 3 2 6 6 C 1.50706 * 125.20446 * 179.85799 * 5 4 3 7 7 C 1.52998 * 109.47222 * 89.71318 * 6 5 4 8 8 H 1.09002 * 109.46576 * 55.00142 * 7 6 5 9 9 C 1.52996 * 109.47332 * 175.00098 * 7 6 5 10 10 N 1.46899 * 109.47069 * 295.00619 * 7 6 5 11 11 C 1.46905 * 110.99567 * 155.00078 * 10 7 6 12 12 C 1.53002 * 109.46864 * 179.97438 * 11 10 7 13 13 H 1.08993 * 109.47457 * 304.99969 * 12 11 10 14 14 C 1.53006 * 109.47040 * 64.99984 * 12 11 10 15 15 C 1.52998 * 109.47452 * 184.99547 * 12 11 10 16 16 C 1.50696 * 109.47465 * 175.00097 * 15 12 11 17 17 H 1.08001 * 120.00121 * 0.02562 * 16 15 12 18 18 C 1.37875 * 120.00227 * 180.02562 * 16 15 12 19 19 N 1.31512 * 119.99807 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00335 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46820 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47100 * 119.99445 * 20 18 16 23 23 H 1.48498 * 109.47071 * 240.00019 * 20 18 16 24 24 S 1.75886 * 125.19813 * 179.97438 * 2 1 3 25 25 H 1.08996 * 109.47717 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46588 * 299.99788 * 1 2 3 27 27 H 1.09001 * 109.46952 * 59.99099 * 1 2 3 28 28 H 1.08004 * 122.53389 * 359.97438 * 3 2 1 29 29 H 1.08001 * 122.53885 * 180.27109 * 4 3 2 30 30 H 1.09003 * 109.47012 * 209.71858 * 6 5 4 31 31 H 1.09004 * 109.46428 * 329.71600 * 6 5 4 32 32 H 1.09001 * 109.47473 * 180.02562 * 9 7 6 33 33 H 1.09001 * 109.47302 * 300.00480 * 9 7 6 34 34 H 1.09003 * 109.46679 * 59.99963 * 9 7 6 35 35 H 1.00900 * 110.99876 * 278.94837 * 10 7 6 36 36 H 1.09003 * 109.47015 * 299.99062 * 11 10 7 37 37 H 1.08995 * 109.47491 * 59.99609 * 11 10 7 38 38 H 1.08999 * 109.47402 * 59.99791 * 14 12 11 39 39 H 1.08999 * 109.46933 * 180.02562 * 14 12 11 40 40 H 1.09002 * 109.46796 * 299.99955 * 14 12 11 41 41 H 1.08997 * 109.47319 * 295.00615 * 15 12 11 42 42 H 1.09006 * 109.46570 * 55.00084 * 15 12 11 43 43 H 0.97004 * 119.99842 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0898 0.0000 4 6 3.6380 0.8427 0.0055 5 6 3.9750 -0.4478 0.0007 6 6 5.3860 -0.9773 0.0020 7 6 5.8624 -1.1560 1.4449 8 1 5.1593 -1.7913 1.9835 9 6 7.2458 -1.8094 1.4480 10 7 5.9390 0.1559 2.1013 11 6 5.8041 0.0242 3.5582 12 6 5.8893 1.4080 4.2054 13 1 6.8131 1.8972 3.8969 14 6 4.6926 2.2525 3.7628 15 6 5.8741 1.2607 5.7282 16 6 6.0811 2.6105 6.3655 17 1 6.2102 3.4859 5.7464 18 6 6.1058 2.7278 7.7391 19 7 5.9481 1.6618 8.4930 20 14 6.3632 4.4008 8.5292 21 1 6.5145 5.4305 7.4698 22 1 5.1913 4.7325 9.3788 23 1 7.5889 4.3692 9.3668 24 16 2.5208 -1.4373 0.0006 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5140 -0.8899 28 1 1.8670 2.0894 -0.0004 29 1 4.3722 1.6348 0.0104 30 1 5.4139 -1.9384 -0.5116 31 1 6.0392 -0.2718 -0.5116 32 1 7.5851 -1.9372 2.4760 33 1 7.1890 -2.7829 0.9609 34 1 7.9489 -1.1741 0.9093 35 1 6.7949 0.6321 1.8590 36 1 4.8414 -0.4291 3.7945 37 1 6.6064 -0.6060 3.9419 38 1 3.7687 1.7633 4.0713 39 1 4.7535 3.2385 4.2235 40 1 4.7034 2.3575 2.6779 41 1 4.9139 0.8531 6.0442 42 1 6.6738 0.5870 6.0360 43 1 5.9650 1.7444 9.4594 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602556331.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:07 Heat of formation + Delta-G solvation = -17.799848 kcal Electronic energy + Delta-G solvation = -19821.590730 eV Core-core repulsion = 16991.330443 eV Total energy + Delta-G solvation = -2830.260287 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -39.40027 -38.33911 -36.60344 -34.49293 -33.15132 -31.24314 -29.21217 -28.61773 -26.63681 -25.51630 -24.34459 -23.44420 -21.87467 -20.65374 -19.59018 -18.48846 -17.67474 -16.64139 -16.35344 -15.98330 -15.97242 -15.60440 -14.93536 -14.59851 -14.43571 -14.19199 -14.11481 -13.83009 -13.62522 -13.42775 -13.11700 -13.01502 -12.92840 -12.77623 -12.55828 -12.47515 -12.30384 -12.21202 -12.08447 -11.88114 -11.81227 -11.51773 -11.45126 -11.07524 -10.85998 -10.54167 -9.30472 -9.20028 -9.06707 -8.17506 -6.26649 0.24362 0.84067 1.20202 1.39599 1.40030 1.53183 2.03552 2.41978 3.16016 3.29588 3.85785 4.07873 4.13838 4.19546 4.34784 4.38935 4.46912 4.48963 4.54367 4.63918 4.76756 4.77040 4.84201 4.90504 4.94371 4.96582 5.01739 5.05337 5.14361 5.20426 5.28764 5.30665 5.44792 5.49275 5.51471 5.57430 5.60881 5.81765 5.83033 5.89535 6.15526 6.32681 6.62868 6.89780 7.41790 8.94901 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018882 B = 0.003819 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.508015 B = 7329.642088 C = 8227.278738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.194 4.194 3 C -0.151 4.151 4 C -0.125 4.125 5 C -0.160 4.160 6 C -0.030 4.030 7 C 0.089 3.911 8 H 0.059 0.941 9 C -0.176 4.176 10 N -0.670 5.670 11 C 0.084 3.916 12 C -0.071 4.071 13 H 0.056 0.944 14 C -0.107 4.107 15 C 0.032 3.968 16 C -0.526 4.526 17 H 0.061 0.939 18 C -0.003 4.003 19 N -0.937 5.937 20 Si 0.961 3.039 21 H -0.261 1.261 22 H -0.280 1.280 23 H -0.279 1.279 24 S 0.057 5.943 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.144 0.856 29 H 0.140 0.860 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.042 0.958 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.344 0.656 36 H 0.048 0.952 37 H 0.016 0.984 38 H 0.025 0.975 39 H 0.035 0.965 40 H 0.069 0.931 41 H -0.015 1.015 42 H -0.015 1.015 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.896 -5.720 -21.638 22.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.311 4.311 3 C -0.181 4.181 4 C -0.154 4.154 5 C -0.277 4.277 6 C -0.070 4.070 7 C -0.022 4.022 8 H 0.077 0.923 9 C -0.235 4.235 10 N -0.301 5.301 11 C -0.045 4.045 12 C -0.090 4.090 13 H 0.074 0.926 14 C -0.164 4.164 15 C -0.005 4.005 16 C -0.565 4.565 17 H 0.080 0.920 18 C -0.200 4.200 19 N -0.578 5.578 20 Si 0.786 3.214 21 H -0.185 1.185 22 H -0.206 1.206 23 H -0.205 1.205 24 S 0.320 5.680 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.106 0.894 28 H 0.161 0.839 29 H 0.158 0.842 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.162 0.838 36 H 0.067 0.933 37 H 0.034 0.966 38 H 0.045 0.955 39 H 0.054 0.946 40 H 0.087 0.913 41 H 0.003 0.997 42 H 0.003 0.997 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.866 -7.174 -21.579 23.485 hybrid contribution 1.200 1.679 1.474 2.536 sum -4.666 -5.496 -20.105 21.359 Atomic orbital electron populations 1.20370 0.86664 1.03225 1.03566 1.24696 1.00803 0.95240 1.10356 1.20286 0.93457 0.99696 1.04696 1.20100 0.95945 0.96412 1.02977 1.24386 0.98178 0.96100 1.09065 1.20192 0.89225 1.01755 0.95819 1.21544 0.96316 0.89765 0.94579 0.92288 1.22435 0.97086 1.02243 1.01735 1.60515 1.43109 1.19597 1.06908 1.21756 0.98871 0.96197 0.87699 1.20983 0.98478 0.94846 0.94688 0.92588 1.21423 0.96208 0.98406 1.00360 1.19012 0.94153 0.95437 0.91906 1.21668 1.48083 0.94917 0.91788 0.92044 1.25960 0.95237 1.00483 0.98331 1.70117 1.51895 1.30796 1.04954 0.85456 0.77691 0.79775 0.78497 1.18466 1.20611 1.20484 1.84061 0.98079 1.10878 1.74972 0.91161 0.90469 0.89361 0.83864 0.84201 0.89501 0.88834 0.93854 0.90714 0.91065 0.83751 0.93318 0.96564 0.95530 0.94613 0.91254 0.99685 0.99691 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.33 10.38 71.24 0.74 -0.59 16 2 C -0.19 -4.36 6.51 24.59 0.16 -4.20 16 3 C -0.15 -3.54 10.05 21.22 0.21 -3.33 16 4 C -0.13 -3.01 9.88 21.21 0.21 -2.80 16 5 C -0.16 -3.68 5.53 24.59 0.14 -3.54 16 6 C -0.03 -0.56 5.39 29.85 0.16 -0.40 16 7 C 0.09 1.96 2.57 44.91 0.12 2.08 16 8 H 0.06 1.53 7.80 -2.39 -0.02 1.51 16 9 C -0.18 -3.30 9.16 71.98 0.66 -2.64 16 10 N -0.67 -17.72 5.28 -491.57 -2.59 -20.31 16 11 C 0.08 2.92 4.87 86.30 0.42 3.34 16 12 C -0.07 -2.93 2.48 -10.79 -0.03 -2.96 16 13 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 14 C -0.11 -4.17 8.89 71.98 0.64 -3.53 16 15 C 0.03 1.74 4.45 29.85 0.13 1.88 16 16 C -0.53 -30.17 8.41 25.60 0.22 -29.96 16 17 H 0.06 3.39 7.06 -2.91 -0.02 3.37 16 18 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 19 N -0.94 -58.09 13.29 21.45 0.28 -57.80 16 20 Si 0.96 44.95 29.54 68.60 2.03 46.98 16 21 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 22 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 24 S 0.06 1.29 23.31 -56.49 -1.32 -0.02 16 25 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 27 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 29 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.04 0.96 7.45 -2.39 -0.02 0.94 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.16 8.13 -2.39 -0.02 1.14 16 35 H 0.34 8.32 8.47 -89.69 -0.76 7.56 16 36 H 0.05 1.84 8.06 -2.39 -0.02 1.82 16 37 H 0.02 0.58 7.44 -2.39 -0.02 0.56 16 38 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.03 1.48 6.95 -2.39 -0.02 1.47 16 40 H 0.07 2.33 7.75 -2.39 -0.02 2.31 16 41 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 42 H -0.02 -0.89 8.14 -2.38 -0.02 -0.91 16 43 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -65.23 361.71 2.84 -62.39 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.20 Total: 15.14 kcal Atomic # 6 Polarization: -50.61 SS G_CDS: 4.24 Total: -46.37 kcal Atomic # 7 Polarization: -75.81 SS G_CDS: -2.31 Total: -78.12 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -1.32 Total: -0.02 kcal Total: -65.23 2.84 -62.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602556331.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.590 kcal (2) G-P(sol) polarization free energy of solvation -65.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds