Wall clock time and date at job start Tue Mar 31 2020 05:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33386 * 125.20043 * 2 1 4 4 C 1.38432 * 114.91918 * 179.97438 * 3 2 1 5 5 C 1.33386 * 114.92087 * 0.02562 * 4 3 2 6 6 C 1.50695 * 125.20514 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47178 * 89.99513 * 6 5 4 8 8 H 1.08998 * 109.47384 * 305.00464 * 7 6 5 9 9 C 1.53004 * 109.47388 * 185.00129 * 7 6 5 10 10 N 1.46898 * 109.47039 * 65.00450 * 7 6 5 11 11 C 1.46902 * 111.00287 * 204.99902 * 10 7 6 12 12 C 1.52994 * 109.47644 * 179.97438 * 11 10 7 13 13 H 1.09000 * 109.47556 * 305.00359 * 12 11 10 14 14 C 1.53002 * 109.46908 * 64.99957 * 12 11 10 15 15 C 1.53003 * 109.47490 * 184.99833 * 12 11 10 16 16 C 1.50703 * 109.47226 * 175.00213 * 15 12 11 17 17 H 1.08003 * 119.99855 * 0.02562 * 16 15 12 18 18 C 1.37869 * 119.99901 * 180.02562 * 16 15 12 19 19 N 1.31515 * 120.00277 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99983 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47000 * 60.00008 * 20 18 16 22 22 H 1.48501 * 109.46912 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47155 * 299.99943 * 20 18 16 24 24 S 1.75882 * 125.20464 * 179.69172 * 2 1 3 25 25 H 1.09002 * 109.47152 * 90.00037 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.00137 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.00118 * 1 2 3 28 28 H 1.07997 * 122.54296 * 359.95309 * 3 2 1 29 29 H 1.08001 * 122.53810 * 179.97438 * 4 3 2 30 30 H 1.08999 * 109.47231 * 209.99979 * 6 5 4 31 31 H 1.09000 * 109.47136 * 329.99696 * 6 5 4 32 32 H 1.08995 * 109.47278 * 180.02562 * 9 7 6 33 33 H 1.08998 * 109.47131 * 300.00489 * 9 7 6 34 34 H 1.09007 * 109.46784 * 59.99880 * 9 7 6 35 35 H 1.00896 * 111.00524 * 81.04455 * 10 7 6 36 36 H 1.09002 * 109.46965 * 300.00582 * 11 10 7 37 37 H 1.09004 * 109.46891 * 59.99518 * 11 10 7 38 38 H 1.09003 * 109.47174 * 59.99856 * 14 12 11 39 39 H 1.09001 * 109.47165 * 179.97438 * 14 12 11 40 40 H 1.08996 * 109.47136 * 300.00377 * 14 12 11 41 41 H 1.09002 * 109.46972 * 295.00355 * 15 12 11 42 42 H 1.08995 * 109.46577 * 55.00481 * 15 12 11 43 43 H 0.96997 * 120.00127 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 0.0006 5 6 3.9751 -0.4477 0.0005 6 6 5.3860 -0.9770 0.0016 7 6 5.8623 -1.1565 1.4444 8 1 5.7506 -0.2158 1.9836 9 6 7.3342 -1.5744 1.4474 10 7 5.0570 -2.1954 2.1002 11 6 5.0419 -2.0084 3.5572 12 6 4.1949 -3.1063 4.2036 13 1 3.2012 -3.1099 3.7556 14 6 4.8614 -4.4647 3.9768 15 6 4.0760 -2.8411 5.7058 16 6 3.1426 -3.8511 6.3220 17 1 2.6806 -4.6069 5.7040 18 6 2.8783 -3.8102 7.6745 19 7 3.4405 -2.8896 8.4269 20 14 1.7207 -5.0617 8.4382 21 1 2.2556 -6.4294 8.2183 22 1 1.6046 -4.8035 9.8960 23 1 0.3813 -4.9466 7.8074 24 16 2.5210 -1.4371 0.0077 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5139 28 1 1.8669 2.0895 -0.0007 29 1 4.3721 1.6351 0.0002 30 1 5.4141 -1.9378 -0.5125 31 1 6.0393 -0.2713 -0.5115 32 1 7.6733 -1.7027 2.4753 33 1 7.4459 -2.5151 0.9082 34 1 7.9317 -0.8035 0.9607 35 1 5.3885 -3.1170 1.8574 36 1 6.0607 -2.0617 3.9409 37 1 4.6150 -1.0338 3.7940 38 1 5.8551 -4.4612 4.4248 39 1 4.2582 -5.2469 4.4377 40 1 4.9461 -4.6537 2.9067 41 1 5.0594 -2.9254 6.1685 42 1 3.6832 -1.8373 5.8674 43 1 3.2548 -2.8611 9.3785 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602556332.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:13 Heat of formation + Delta-G solvation = -2.014629 kcal Electronic energy + Delta-G solvation = -19782.067401 eV Core-core repulsion = 16952.491612 eV Total energy + Delta-G solvation = -2829.575789 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -38.35265 -37.27657 -35.06558 -32.71471 -31.88946 -29.93502 -28.29074 -26.76195 -25.28135 -24.51809 -22.71224 -22.29229 -20.79933 -18.93999 -18.55167 -16.83475 -16.33260 -15.33866 -15.14656 -14.74610 -14.42439 -14.23540 -13.81587 -13.48603 -13.22042 -12.96134 -12.84314 -12.63316 -12.41551 -12.08500 -11.94697 -11.76832 -11.71145 -11.37365 -11.24133 -11.18852 -10.90308 -10.80716 -10.70874 -10.41025 -10.29836 -10.14332 -9.66874 -9.10322 -8.93313 -8.30079 -8.28460 -8.18331 -7.94561 -5.94161 -3.95139 1.20672 1.86716 2.28913 2.90703 3.36525 3.40745 3.43370 4.40724 4.52933 4.78104 4.97339 5.05781 5.18498 5.31033 5.37651 5.41551 5.42448 5.50749 5.62472 5.70162 5.72306 5.79124 5.84586 5.88278 5.94133 6.01390 6.08768 6.15205 6.32829 6.35932 6.46710 6.52166 6.62102 6.71435 7.01101 7.15313 7.22926 7.44604 7.72271 7.75181 7.91132 8.06414 8.50459 9.11062 9.68000 11.17380 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015684 B = 0.004269 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.776287 B = 6556.788645 C = 7689.204663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.200 4.200 3 C -0.142 4.142 4 C -0.155 4.155 5 C -0.150 4.150 6 C -0.038 4.038 7 C 0.085 3.915 8 H 0.078 0.922 9 C -0.181 4.181 10 N -0.681 5.681 11 C 0.068 3.932 12 C -0.083 4.083 13 H 0.065 0.935 14 C -0.132 4.132 15 C 0.029 3.971 16 C -0.512 4.512 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.898 5.898 20 Si 0.889 3.111 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.277 1.277 24 S 0.140 5.860 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.337 0.663 36 H 0.022 0.978 37 H 0.064 0.936 38 H 0.039 0.961 39 H 0.061 0.939 40 H 0.031 0.969 41 H 0.013 0.987 42 H 0.014 0.986 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.285 5.812 -19.695 20.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.318 4.318 3 C -0.172 4.172 4 C -0.185 4.185 5 C -0.268 4.268 6 C -0.078 4.078 7 C -0.026 4.026 8 H 0.097 0.903 9 C -0.240 4.240 10 N -0.312 5.312 11 C -0.060 4.060 12 C -0.102 4.102 13 H 0.084 0.916 14 C -0.190 4.190 15 C -0.009 4.009 16 C -0.550 4.550 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 S 0.406 5.594 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.147 0.853 29 H 0.148 0.852 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.156 0.844 36 H 0.040 0.960 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.080 0.920 40 H 0.050 0.950 41 H 0.031 0.969 42 H 0.032 0.968 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.400 4.644 -19.594 20.186 hybrid contribution 0.627 0.690 0.944 1.327 sum 2.027 5.333 -18.650 19.503 Atomic orbital electron populations 1.20283 0.88395 1.03097 1.02102 1.24520 0.99896 0.96761 1.10606 1.19919 0.92992 0.98801 1.05492 1.19924 0.96016 0.95807 1.06796 1.24218 0.98720 0.96119 1.07722 1.20195 0.89838 1.00837 0.96892 1.21569 0.90106 0.96770 0.94162 0.90340 1.22502 0.97628 1.01608 1.02295 1.60652 1.55511 1.05366 1.09674 1.22111 0.98184 1.00358 0.85374 1.21203 0.97837 0.92350 0.98805 0.91635 1.21729 1.00204 0.98852 0.98204 1.19095 0.96810 0.96835 0.88130 1.21203 1.26718 1.14194 0.92895 0.92655 1.25010 0.96250 0.95763 0.97474 1.69956 1.44032 1.34011 1.05739 0.86706 0.81587 0.81908 0.78086 1.20325 1.21396 1.20283 1.84318 0.95573 1.08239 1.71283 0.91306 0.90946 0.91330 0.85276 0.85232 0.91010 0.90317 0.92241 0.92526 0.92345 0.84428 0.95957 0.91742 0.94161 0.91982 0.95009 0.96882 0.96767 0.93091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.38 36.01 0.37 -0.44 16 2 C -0.20 -2.54 6.51 -36.00 -0.23 -2.77 16 3 C -0.14 -1.75 10.05 -41.21 -0.41 -2.16 16 4 C -0.16 -1.91 10.05 -41.21 -0.41 -2.33 16 5 C -0.15 -1.89 5.49 -36.01 -0.20 -2.09 16 6 C -0.04 -0.41 5.39 -27.89 -0.15 -0.56 16 7 C 0.09 1.02 2.58 -67.71 -0.17 0.84 16 8 H 0.08 1.03 7.80 -51.93 -0.40 0.63 16 9 C -0.18 -1.87 9.16 37.16 0.34 -1.53 16 10 N -0.68 -9.73 5.96 -106.73 -0.64 -10.37 16 11 C 0.07 1.19 4.94 -3.83 -0.02 1.17 16 12 C -0.08 -1.71 2.55 -90.62 -0.23 -1.94 16 13 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 14 C -0.13 -2.48 8.77 37.16 0.33 -2.16 16 15 C 0.03 0.75 4.45 -27.88 -0.12 0.62 16 16 C -0.51 -14.48 8.41 -34.44 -0.29 -14.77 16 17 H 0.06 1.52 7.06 -52.48 -0.37 1.15 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.28 13.29 55.43 0.74 -26.55 16 20 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 S 0.14 1.87 23.31 -107.50 -2.51 -0.64 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 29 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.68 7.45 -51.93 -0.39 0.29 16 33 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 34 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 35 H 0.34 4.59 6.72 -39.29 -0.26 4.33 16 36 H 0.02 0.39 7.44 -51.93 -0.39 0.00 16 37 H 0.06 1.21 8.06 -51.93 -0.42 0.79 16 38 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 40 H 0.03 0.50 6.68 -51.93 -0.35 0.15 16 41 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 359.72 15.07 5.42 5.42 Total: -1.00 -30.23 359.72 -10.88 -41.11 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -7.57 Total: 0.72 kcal Atomic # 6 Polarization: -25.29 SS G_CDS: -1.31 Total: -26.59 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.10 Total: -36.92 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.51 Total: -0.64 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.23 -10.88 -41.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602556332.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.093 kcal (2) G-P(sol) polarization free energy of solvation -30.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds