Wall clock time and date at job start Tue Mar 31 2020 05:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.33388 * 125.20061 * 2 1 4 4 C 1.38427 * 114.91750 * 179.74982 * 3 2 1 5 5 C 1.33392 * 114.91990 * 0.43264 * 4 3 2 6 6 C 1.50706 * 125.20122 * 179.86016 * 5 4 3 7 7 C 1.53000 * 109.46942 * 89.71569 * 6 5 4 8 8 H 1.09004 * 109.47472 * 54.99930 * 7 6 5 9 9 C 1.52999 * 109.46850 * 175.00099 * 7 6 5 10 10 N 1.46905 * 109.47134 * 294.99906 * 7 6 5 11 11 C 1.46901 * 110.99870 * 155.00327 * 10 7 6 12 12 C 1.53004 * 109.46916 * 180.02562 * 11 10 7 13 13 H 1.08998 * 109.47143 * 54.99734 * 12 11 10 14 14 C 1.52992 * 109.46921 * 294.99594 * 12 11 10 15 15 C 1.52997 * 109.46820 * 175.00024 * 12 11 10 16 16 C 1.50708 * 109.47042 * 185.00012 * 15 12 11 17 17 H 1.08004 * 119.99423 * 359.97438 * 16 15 12 18 18 C 1.37873 * 119.99854 * 180.02562 * 16 15 12 19 19 N 1.31510 * 120.00179 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99744 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47735 * 89.99581 * 20 18 16 22 22 H 1.48498 * 109.46856 * 210.00092 * 20 18 16 23 23 H 1.48506 * 109.46711 * 329.99483 * 20 18 16 24 24 S 1.75881 * 109.59533 * 359.59057 * 5 4 3 25 25 H 1.09005 * 109.46752 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47074 * 299.99744 * 1 2 3 27 27 H 1.08999 * 109.47185 * 60.00230 * 1 2 3 28 28 H 1.07993 * 122.54053 * 359.97438 * 3 2 1 29 29 H 1.07994 * 122.54075 * 180.26587 * 4 3 2 30 30 H 1.08994 * 109.47127 * 329.71612 * 6 5 4 31 31 H 1.08993 * 109.46609 * 209.71402 * 6 5 4 32 32 H 1.08999 * 109.47123 * 299.99642 * 9 7 6 33 33 H 1.08997 * 109.47624 * 60.00208 * 9 7 6 34 34 H 1.09006 * 109.47163 * 180.02562 * 9 7 6 35 35 H 1.00901 * 110.99869 * 31.05038 * 10 7 6 36 36 H 1.09004 * 109.47031 * 299.99620 * 11 10 7 37 37 H 1.08995 * 109.47111 * 59.99900 * 11 10 7 38 38 H 1.08999 * 109.47135 * 179.97438 * 14 12 11 39 39 H 1.08997 * 109.47560 * 300.00527 * 14 12 11 40 40 H 1.09010 * 109.47245 * 60.00445 * 14 12 11 41 41 H 1.09008 * 109.47139 * 304.99603 * 15 12 11 42 42 H 1.09001 * 109.47414 * 64.99548 * 15 12 11 43 43 H 0.97000 * 119.99957 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 3.6380 0.8429 0.0055 5 6 3.9751 -0.4477 0.0008 6 6 5.3861 -0.9771 0.0021 7 6 5.8624 -1.1557 1.4451 8 1 5.1594 -1.7910 1.9838 9 6 7.2459 -1.8090 1.4482 10 7 5.9389 0.1563 2.1015 11 6 5.8041 0.0248 3.5584 12 6 5.8879 1.4088 4.2053 13 1 5.1419 2.0651 3.7572 14 6 7.2834 1.9936 3.9792 15 6 5.6234 1.2864 5.7073 16 6 5.5843 2.6609 6.3240 17 1 5.7336 3.5343 5.7065 18 6 5.3589 2.8033 7.6768 19 7 5.1776 1.7398 8.4287 20 14 5.3097 4.5071 8.4411 21 1 3.9184 5.0251 8.4070 22 1 5.7754 4.4315 9.8491 23 1 6.1963 5.4192 7.6747 24 16 2.5210 -1.4372 0.0006 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8669 2.0894 -0.0004 29 1 4.3721 1.6350 0.0103 30 1 6.0393 -0.2716 -0.5114 31 1 5.4140 -1.9381 -0.5113 32 1 7.1892 -2.7825 0.9613 33 1 7.9490 -1.1737 0.9096 34 1 7.5851 -1.9367 2.4763 35 1 5.2452 0.7876 1.7296 36 1 4.8414 -0.4286 3.7946 37 1 6.6064 -0.6053 3.9421 38 1 7.3431 2.9798 4.4397 39 1 8.0295 1.3373 4.4272 40 1 7.4719 2.0808 2.9091 41 1 4.6672 0.7885 5.8684 42 1 6.4194 0.7030 6.1701 43 1 5.0187 1.8400 9.3804 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602556333.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:19 Heat of formation + Delta-G solvation = -2.804020 kcal Electronic energy + Delta-G solvation = -19764.985081 eV Core-core repulsion = 16935.375062 eV Total energy + Delta-G solvation = -2829.610019 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -38.67899 -37.14270 -35.07651 -32.69812 -31.94245 -30.12992 -28.45475 -26.72558 -25.17635 -24.65264 -22.92251 -22.30781 -20.43948 -19.17941 -18.73019 -16.91263 -16.30029 -15.79040 -15.32524 -14.82699 -14.44156 -14.09228 -14.00787 -13.68572 -13.28499 -12.96949 -12.84230 -12.65693 -12.24436 -12.10223 -12.05167 -11.80113 -11.52904 -11.50561 -11.40499 -11.17686 -10.87623 -10.82212 -10.76546 -10.62486 -10.24695 -10.14338 -9.64817 -9.09835 -8.91122 -8.54467 -8.48084 -8.29551 -8.03379 -5.94293 -3.95203 0.90773 1.52405 1.90724 2.67956 3.34882 3.41075 3.44626 4.41801 4.53097 4.62351 4.75787 4.94674 5.08111 5.18330 5.33549 5.34140 5.41500 5.50255 5.56790 5.64836 5.74676 5.76263 5.78855 5.87149 5.96696 6.08867 6.11633 6.21642 6.23280 6.35859 6.46739 6.49477 6.62246 6.74681 7.07562 7.23148 7.25586 7.45755 7.72425 7.77066 7.90573 8.06290 8.50593 9.11166 9.67937 11.17318 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016314 B = 0.003986 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.908882 B = 7023.563327 C = 8083.538531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.182 4.182 3 C -0.137 4.137 4 C -0.134 4.134 5 C -0.176 4.176 6 C -0.051 4.051 7 C 0.086 3.914 8 H 0.042 0.958 9 C -0.138 4.138 10 N -0.683 5.683 11 C 0.065 3.935 12 C -0.082 4.082 13 H 0.051 0.949 14 C -0.121 4.121 15 C 0.027 3.973 16 C -0.511 4.511 17 H 0.056 0.944 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.889 3.111 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.274 1.274 24 S 0.087 5.913 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.139 0.861 29 H 0.143 0.857 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.338 0.662 36 H 0.022 0.978 37 H 0.065 0.935 38 H 0.052 0.948 39 H 0.039 0.961 40 H 0.041 0.959 41 H 0.011 0.989 42 H 0.016 0.984 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.404 -6.729 -20.113 21.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.299 4.299 3 C -0.167 4.167 4 C -0.164 4.164 5 C -0.293 4.293 6 C -0.091 4.091 7 C -0.025 4.025 8 H 0.060 0.940 9 C -0.196 4.196 10 N -0.317 5.317 11 C -0.064 4.064 12 C -0.100 4.100 13 H 0.070 0.930 14 C -0.179 4.179 15 C -0.010 4.010 16 C -0.549 4.549 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.717 3.283 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.199 1.199 24 S 0.351 5.649 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.156 0.844 29 H 0.160 0.840 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.158 0.842 36 H 0.040 0.960 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.030 0.970 42 H 0.034 0.966 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.038 -8.332 -19.920 21.966 hybrid contribution -0.799 2.223 0.761 2.482 sum -4.837 -6.109 -19.159 20.683 Atomic orbital electron populations 1.20320 0.87989 1.02713 1.02971 1.24449 0.99841 0.95617 1.10016 1.20068 0.92974 0.99321 1.04290 1.20150 0.96340 0.96006 1.03917 1.24489 0.98554 0.96458 1.09836 1.20410 0.89244 1.01662 0.97757 1.21503 0.96642 0.91764 0.92588 0.94042 1.21772 0.96377 0.99080 1.02354 1.60696 1.55787 1.09858 1.05309 1.22168 0.98963 0.99264 0.85976 1.21181 0.97113 0.93072 0.98678 0.93033 1.21576 0.96351 1.00715 0.99235 1.19119 0.96605 0.97054 0.88230 1.21243 1.48005 0.92773 0.92923 0.92600 1.25014 0.95612 0.96445 0.97462 1.69968 1.49660 1.28389 1.05706 0.86641 0.78200 0.84934 0.78524 1.20791 1.21309 1.19875 1.84174 0.96907 1.09938 1.73865 0.91651 0.90451 0.90695 0.84357 0.83961 0.89099 0.90444 0.93064 0.91956 0.92278 0.84161 0.96015 0.91613 0.92870 0.94199 0.93980 0.97020 0.96587 0.93145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.38 36.01 0.37 -0.31 16 2 C -0.18 -2.02 6.51 -36.00 -0.23 -2.25 16 3 C -0.14 -1.56 10.05 -41.21 -0.41 -1.97 16 4 C -0.13 -1.58 8.54 -41.21 -0.35 -1.93 16 5 C -0.18 -2.05 5.40 -36.00 -0.19 -2.24 16 6 C -0.05 -0.54 5.31 -27.88 -0.15 -0.69 16 7 C 0.09 1.09 2.64 -67.71 -0.18 0.91 16 8 H 0.04 0.58 7.80 -51.93 -0.40 0.17 16 9 C -0.14 -1.58 9.41 37.16 0.35 -1.23 16 10 N -0.68 -10.25 5.76 -106.72 -0.62 -10.87 16 11 C 0.06 1.18 4.87 -3.82 -0.02 1.16 16 12 C -0.08 -1.72 2.48 -90.62 -0.22 -1.95 16 13 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 14 C -0.12 -2.42 8.89 37.15 0.33 -2.09 16 15 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 16 C -0.51 -14.57 8.41 -34.44 -0.29 -14.86 16 17 H 0.06 1.55 7.06 -52.48 -0.37 1.18 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 20 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 24 S 0.09 0.98 23.31 -107.50 -2.51 -1.52 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 29 H 0.14 1.55 7.67 -52.49 -0.40 1.15 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.75 7.45 -51.93 -0.39 0.36 16 35 H 0.34 5.02 5.82 -39.29 -0.23 4.79 16 36 H 0.02 0.41 8.06 -51.93 -0.42 0.00 16 37 H 0.07 1.21 7.44 -51.93 -0.39 0.82 16 38 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.04 0.75 7.75 -51.92 -0.40 0.34 16 41 H 0.01 0.32 8.14 -51.92 -0.42 -0.10 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 357.94 15.07 5.39 5.39 Total: -1.00 -30.42 357.94 -10.80 -41.23 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.57 Total: 0.82 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: -1.22 Total: -25.35 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.12 Total: -37.51 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.51 Total: -1.52 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.42 -10.80 -41.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602556333.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.422 kcal (2) G-P(sol) polarization free energy of solvation -30.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds