Wall clock time and date at job start Tue Mar 31 2020 05:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46499 * 2 1 4 4 C 1.53001 * 109.47393 * 239.99662 * 2 1 3 5 5 C 1.50700 * 109.46906 * 64.99739 * 4 2 1 6 6 H 1.08002 * 120.00228 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00251 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99552 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 120.00348 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47202 * 59.99938 * 9 7 5 11 11 H 1.48506 * 109.47156 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47448 * 299.99902 * 9 7 5 13 13 C 1.53002 * 109.46986 * 119.99658 * 2 1 3 14 14 N 1.46903 * 109.47062 * 295.00110 * 13 2 1 15 15 C 1.46904 * 110.99752 * 180.02562 * 14 13 2 16 16 C 1.53005 * 109.47061 * 180.02562 * 15 14 13 17 17 H 1.08997 * 109.46949 * 54.99565 * 16 15 14 18 18 C 1.53003 * 109.46875 * 294.99797 * 16 15 14 19 19 C 1.52995 * 109.47086 * 174.99702 * 16 15 14 20 20 C 1.50702 * 109.47096 * 184.99906 * 19 16 15 21 21 C 1.33381 * 125.20592 * 89.99839 * 20 19 16 22 22 C 1.38427 * 114.92374 * 179.97438 * 21 20 19 23 23 C 1.33387 * 114.91991 * 0.25034 * 22 21 20 24 24 S 1.75886 * 109.59194 * 359.63459 * 23 22 21 25 25 H 1.08996 * 109.47453 * 300.00006 * 1 2 3 26 26 H 1.08996 * 109.47627 * 60.00585 * 1 2 3 27 27 H 1.09000 * 109.46916 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46771 * 184.99711 * 4 2 1 29 29 H 1.08997 * 109.47015 * 305.00223 * 4 2 1 30 30 H 0.97001 * 120.00016 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.47037 * 175.00256 * 13 2 1 32 32 H 1.08993 * 109.47290 * 55.00420 * 13 2 1 33 33 H 1.00898 * 111.00225 * 303.95294 * 14 13 2 34 34 H 1.08998 * 109.47217 * 59.99860 * 15 14 13 35 35 H 1.08997 * 109.46865 * 299.99675 * 15 14 13 36 36 H 1.09003 * 109.46840 * 300.00289 * 18 16 15 37 37 H 1.09001 * 109.47104 * 59.99579 * 18 16 15 38 38 H 1.08999 * 109.46998 * 180.02562 * 18 16 15 39 39 H 1.08996 * 109.46856 * 64.99851 * 19 16 15 40 40 H 1.08996 * 109.47050 * 304.99994 * 19 16 15 41 41 H 1.08002 * 122.53744 * 359.94345 * 21 20 19 42 42 H 1.08002 * 122.53759 * 179.97438 * 22 21 20 43 43 H 1.08002 * 125.20431 * 179.75072 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0569 -2.4766 6 1 1.0806 0.9744 -2.3757 7 6 1.9923 -0.4024 -3.7283 8 7 2.6756 -1.5194 -3.8511 9 14 1.4987 0.5626 -5.2496 10 1 2.0918 1.9226 -5.1872 11 1 1.9937 -0.1376 -6.4621 12 1 0.0189 0.6702 -5.3090 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0376 2.4457 15 6 2.1257 -0.6263 3.6672 16 6 1.7022 0.1911 4.8893 17 1 0.6231 0.3434 4.8684 18 6 2.4093 1.5478 4.8653 19 6 2.0864 -0.5617 6.1646 20 6 1.5613 0.1828 7.3650 21 6 0.3642 -0.0043 7.9227 22 6 0.1004 0.7968 9.0204 23 6 1.0814 1.6381 9.3509 24 16 2.4335 1.4309 8.2453 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1263 -0.7994 -1.2054 29 1 1.6054 -1.7198 -1.2951 30 1 2.9229 -1.8424 -4.7317 31 1 3.1262 -0.7994 1.2057 32 1 1.6054 -1.7197 1.2953 33 1 1.9880 0.9874 2.3967 34 1 3.2126 -0.7035 3.6401 35 1 1.6920 -1.6243 3.7301 36 1 3.4884 1.3954 4.8861 37 1 2.1356 2.0841 3.9567 38 1 2.1080 2.1300 5.7361 39 1 3.1719 -0.6362 6.2294 40 1 1.6545 -1.5622 6.1399 41 1 -0.3458 -0.7257 7.5460 42 1 -0.8309 0.7476 9.5651 43 1 1.0508 2.3379 10.1729 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602560575.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:05 Heat of formation + Delta-G solvation = -2.031281 kcal Electronic energy + Delta-G solvation = -19098.057482 eV Core-core repulsion = 16268.480972 eV Total energy + Delta-G solvation = -2829.576511 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.59450 -37.36832 -35.64227 -33.27368 -31.77552 -29.94142 -27.04062 -26.78100 -26.03220 -24.39753 -23.08868 -22.03199 -20.42249 -19.28497 -18.96397 -17.36663 -16.32106 -15.81845 -15.63243 -14.96251 -14.60210 -14.36329 -14.14101 -13.60823 -13.24894 -13.09610 -12.89571 -12.66466 -12.54394 -12.31817 -12.07307 -11.81334 -11.51690 -11.35148 -11.22692 -10.99674 -10.86512 -10.82169 -10.77147 -10.65608 -10.26756 -10.18575 -9.66980 -9.12460 -8.95501 -8.82147 -8.66400 -8.30660 -8.07656 -5.95577 -3.96625 0.76789 1.40164 1.77530 2.51907 3.35834 3.40015 3.42680 4.30346 4.49682 4.61641 4.75074 4.83370 4.98777 5.02498 5.20383 5.33927 5.40052 5.43580 5.48035 5.61600 5.65541 5.76098 5.82474 5.87827 5.91817 5.94753 6.07076 6.17036 6.19749 6.21764 6.32050 6.45147 6.58710 6.72154 7.04659 7.21361 7.23023 7.41047 7.68340 7.72780 7.88167 8.04780 8.48913 9.09561 9.66509 11.15957 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.047506 B = 0.002350 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.260081 B =11911.096747 C =11940.854576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.052 0.948 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.064 3.936 14 N -0.688 5.688 15 C 0.063 3.937 16 C -0.084 4.084 17 H 0.083 0.917 18 C -0.156 4.156 19 C -0.047 4.047 20 C -0.158 4.158 21 C -0.146 4.146 22 C -0.131 4.131 23 C -0.224 4.224 24 S 0.093 5.907 25 H 0.041 0.959 26 H 0.053 0.947 27 H 0.039 0.961 28 H 0.012 0.988 29 H 0.016 0.984 30 H 0.260 0.740 31 H 0.023 0.977 32 H 0.065 0.935 33 H 0.337 0.663 34 H 0.026 0.974 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.639 4.041 26.513 26.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.319 5.319 15 C -0.067 4.067 16 C -0.103 4.103 17 H 0.101 0.899 18 C -0.214 4.214 19 C -0.087 4.087 20 C -0.276 4.276 21 C -0.176 4.176 22 C -0.161 4.161 23 C -0.359 4.359 24 S 0.356 5.644 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.030 0.970 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.155 0.845 34 H 0.044 0.956 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.157 0.843 42 H 0.155 0.845 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.766 4.313 26.289 26.651 hybrid contribution -0.656 0.024 -0.729 0.981 sum -1.422 4.338 25.560 25.964 Atomic orbital electron populations 1.21582 0.95736 1.00541 1.00109 1.21196 0.95996 0.98868 0.94071 0.92920 1.19118 0.95878 0.95576 0.90456 1.21204 1.34617 1.08252 0.91002 0.92632 1.25026 0.95369 0.95115 0.99098 1.69957 1.39073 1.21240 1.23455 0.86684 0.78904 0.80087 0.82475 1.20331 1.21392 1.20261 1.22146 0.97097 0.97723 0.89520 1.60567 1.64033 1.05827 1.01478 1.21961 0.97122 0.97937 0.89642 1.21149 1.01668 0.95092 0.92382 0.89861 1.21988 1.00049 0.96948 1.02373 1.20252 1.00888 0.97985 0.89549 1.24517 0.98353 1.02455 1.02248 1.20151 0.97078 1.02809 0.97556 1.20175 1.00296 0.97183 0.98489 1.25604 0.98156 1.06635 1.05532 1.84342 1.19493 1.36394 1.24128 0.93950 0.92821 0.94198 0.96970 0.96570 0.93064 0.95868 0.91608 0.84496 0.95584 0.91189 0.92981 0.91910 0.92253 0.90791 0.89743 0.84282 0.84488 0.82177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.89 37.16 0.33 -2.08 16 2 C -0.08 -1.70 2.48 -90.62 -0.22 -1.93 16 3 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.48 8.41 -34.44 -0.29 -14.77 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 9 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.06 1.11 5.07 -3.82 -0.02 1.09 16 14 N -0.69 -9.92 5.95 -113.78 -0.68 -10.60 16 15 C 0.06 0.75 5.14 -3.82 -0.02 0.73 16 16 C -0.08 -0.84 2.59 -90.62 -0.23 -1.07 16 17 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 18 C -0.16 -1.54 8.70 37.16 0.32 -1.22 16 19 C -0.05 -0.41 5.18 -27.88 -0.14 -0.55 16 20 C -0.16 -1.45 5.08 -36.00 -0.18 -1.63 16 21 C -0.15 -1.30 10.05 -41.21 -0.41 -1.71 16 22 C -0.13 -1.07 10.18 -41.21 -0.42 -1.49 16 23 C -0.22 -1.79 11.23 29.04 0.33 -1.46 16 24 S 0.09 0.81 21.89 -107.50 -2.35 -1.55 16 25 H 0.04 0.75 7.75 -51.93 -0.40 0.34 16 26 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.34 4.67 6.98 -39.29 -0.27 4.40 16 34 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.65 6.68 -51.93 -0.35 0.30 16 38 H 0.06 0.57 6.17 -51.93 -0.32 0.25 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 42 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.16 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 356.67 15.07 5.37 5.37 Total: -1.00 -29.98 356.67 -10.68 -40.66 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -7.55 Total: -0.23 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: -1.19 Total: -24.04 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.06 Total: -37.06 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.35 Total: -1.55 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.98 -10.68 -40.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602560575.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.627 kcal (2) G-P(sol) polarization free energy of solvation -29.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds