Wall clock time and date at job start Tue Mar 31 2020 05:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47679 * 2 1 4 4 C 1.53000 * 109.46922 * 239.99739 * 2 1 3 5 5 C 1.50700 * 109.47016 * 65.00305 * 4 2 1 6 6 H 1.07999 * 120.00137 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00404 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99608 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00229 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47170 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46976 * 120.00318 * 9 7 5 12 12 H 1.48493 * 109.47190 * 240.00042 * 9 7 5 13 13 C 1.52998 * 109.47167 * 120.00142 * 2 1 3 14 14 N 1.46900 * 109.47093 * 294.99796 * 13 2 1 15 15 C 1.46905 * 111.00154 * 180.02562 * 14 13 2 16 16 C 1.52997 * 109.47150 * 180.02562 * 15 14 13 17 17 H 1.09002 * 109.47153 * 304.99641 * 16 15 14 18 18 C 1.53000 * 109.47060 * 64.99960 * 16 15 14 19 19 C 1.53002 * 109.46817 * 184.99872 * 16 15 14 20 20 C 1.50703 * 109.46970 * 175.00092 * 19 16 15 21 21 C 1.33384 * 125.20495 * 89.71256 * 20 19 16 22 22 C 1.38431 * 114.92217 * 179.86245 * 21 20 19 23 23 C 1.33387 * 114.91807 * 0.42908 * 22 21 20 24 24 S 1.75887 * 109.59540 * 359.77695 * 23 22 21 25 25 H 1.08997 * 109.46953 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46539 * 300.00116 * 1 2 3 27 27 H 1.08999 * 109.46814 * 59.99608 * 1 2 3 28 28 H 1.09001 * 109.47419 * 184.99860 * 4 2 1 29 29 H 1.09001 * 109.47845 * 305.00268 * 4 2 1 30 30 H 0.96993 * 119.99854 * 180.02562 * 8 7 5 31 31 H 1.09004 * 109.47116 * 174.99784 * 13 2 1 32 32 H 1.08999 * 109.47214 * 54.99925 * 13 2 1 33 33 H 1.00895 * 110.99884 * 56.04570 * 14 13 2 34 34 H 1.09001 * 109.47063 * 59.99499 * 15 14 13 35 35 H 1.09004 * 109.46681 * 300.00124 * 15 14 13 36 36 H 1.09004 * 109.46724 * 180.02562 * 18 16 15 37 37 H 1.09001 * 109.47194 * 299.99650 * 18 16 15 38 38 H 1.08992 * 109.47399 * 59.99823 * 18 16 15 39 39 H 1.09000 * 109.47059 * 294.99790 * 19 16 15 40 40 H 1.08996 * 109.47073 * 54.99883 * 19 16 15 41 41 H 1.08008 * 122.54111 * 0.02562 * 21 20 19 42 42 H 1.07995 * 122.53960 * 180.21023 * 22 21 20 43 43 H 1.07999 * 125.20397 * 179.79018 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0807 0.9746 -2.3757 7 6 1.9932 -0.4017 -3.7283 8 7 2.6763 -1.5188 -3.8512 9 14 1.4984 0.5627 -5.2496 10 1 0.7412 1.7738 -4.8434 11 1 2.7163 0.9682 -5.9964 12 1 0.6451 -0.2870 -6.1185 13 6 2.0400 -0.7213 1.2492 14 7 1.6515 0.0374 2.4456 15 6 2.1259 -0.6265 3.6672 16 6 1.7025 0.1909 4.8892 17 1 2.0614 1.2147 4.7837 18 6 0.1763 0.1940 4.9968 19 6 2.3015 -0.4320 6.1518 20 6 1.9874 0.4404 7.3399 21 6 0.9014 0.3334 8.1067 22 6 0.8289 1.2451 9.1459 23 6 1.8517 2.0982 9.2174 24 16 2.9932 1.7605 7.9226 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 3.1263 -0.7996 -1.2057 29 1 1.6054 -1.7199 -1.2952 30 1 2.9241 -1.8414 -4.7317 31 1 3.1264 -0.7995 1.2055 32 1 1.6054 -1.7198 1.2951 33 1 0.6530 0.1793 2.4753 34 1 3.2128 -0.7038 3.6400 35 1 1.6921 -1.6246 3.7300 36 1 -0.1253 0.7768 5.8672 37 1 -0.2505 0.6377 4.0973 38 1 -0.1826 -0.8297 5.1024 39 1 1.8746 -1.4230 6.3058 40 1 3.3823 -0.5156 6.0380 41 1 0.1377 -0.4101 7.9319 42 1 0.0048 1.2664 9.8435 43 1 1.9622 2.8771 9.9573 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602560584.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:07 Heat of formation + Delta-G solvation = -1.914075 kcal Electronic energy + Delta-G solvation = -19114.198949 eV Core-core repulsion = 16284.627521 eV Total energy + Delta-G solvation = -2829.571428 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.68223 -37.37962 -35.64037 -33.25608 -31.76484 -29.85417 -27.22744 -26.88628 -26.00111 -24.45091 -23.10390 -21.98254 -20.26853 -19.45386 -18.86972 -17.28320 -16.49609 -16.01553 -15.53728 -14.94054 -14.66291 -14.32037 -14.11358 -13.39027 -13.30665 -13.25287 -12.86798 -12.66010 -12.49655 -12.28137 -12.22741 -11.88372 -11.65295 -11.36863 -11.23565 -10.98733 -10.88456 -10.81299 -10.77421 -10.67136 -10.30058 -10.14169 -9.69498 -9.13696 -8.94111 -8.81767 -8.69520 -8.31512 -8.09723 -5.96039 -3.96933 0.77458 1.41280 1.78931 2.51287 3.33282 3.40830 3.45065 4.30439 4.49633 4.63021 4.73644 4.82724 4.95076 5.04417 5.26244 5.32174 5.39814 5.41172 5.48506 5.61241 5.65417 5.75229 5.82439 5.86533 5.90106 5.93442 6.06094 6.07980 6.17700 6.22194 6.28621 6.30988 6.49828 6.58497 6.97505 7.12800 7.19801 7.41547 7.69638 7.72838 7.88511 8.04608 8.48592 9.09721 9.66380 11.15573 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.043833 B = 0.002366 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.632612 B =11833.282626 C =11868.942521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.065 0.935 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.691 5.691 15 C 0.063 3.937 16 C -0.084 4.084 17 H 0.081 0.919 18 C -0.152 4.152 19 C -0.047 4.047 20 C -0.158 4.158 21 C -0.146 4.146 22 C -0.133 4.133 23 C -0.222 4.222 24 S 0.096 5.904 25 H 0.040 0.960 26 H 0.031 0.969 27 H 0.062 0.938 28 H 0.015 0.985 29 H 0.014 0.986 30 H 0.259 0.741 31 H 0.066 0.934 32 H 0.022 0.978 33 H 0.338 0.662 34 H 0.070 0.930 35 H 0.026 0.974 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.729 3.383 26.523 26.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.083 0.917 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.064 4.064 14 N -0.323 5.323 15 C -0.067 4.067 16 C -0.104 4.104 17 H 0.100 0.900 18 C -0.209 4.209 19 C -0.087 4.087 20 C -0.276 4.276 21 C -0.176 4.176 22 C -0.163 4.163 23 C -0.358 4.358 24 S 0.359 5.641 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.081 0.919 28 H 0.033 0.967 29 H 0.032 0.968 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.158 0.842 34 H 0.088 0.912 35 H 0.044 0.956 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.156 0.844 42 H 0.155 0.845 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.745 4.335 25.919 26.290 hybrid contribution -2.180 -0.897 -0.341 2.382 sum -2.925 3.438 25.579 25.974 Atomic orbital electron populations 1.21740 0.96753 1.00384 1.00234 1.21220 0.94819 1.00101 0.94180 0.91652 1.19119 0.96144 0.95364 0.90406 1.21281 1.34468 1.08218 0.90974 0.92515 1.25033 0.95380 0.95118 0.99127 1.69978 1.39200 1.21281 1.23242 0.86571 0.78253 0.80114 0.83280 1.19753 1.21092 1.21138 1.22133 1.00311 0.94395 0.89596 1.60592 1.19735 1.50585 1.01429 1.21967 1.00404 0.94831 0.89507 1.21149 0.96071 1.00701 0.92446 0.90016 1.21918 0.95215 1.01600 1.02166 1.20243 1.01517 0.97005 0.89902 1.24529 0.98933 1.01809 1.02325 1.20122 0.98909 1.02105 0.96448 1.20168 0.99745 0.96451 0.99955 1.25588 0.99721 1.06195 1.04261 1.84409 1.25202 1.29682 1.24781 0.94058 0.95043 0.91853 0.96658 0.96771 0.93178 0.91530 0.95928 0.84248 0.91173 0.95559 0.92247 0.92201 0.92991 0.89968 0.90549 0.84436 0.84545 0.82160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.77 37.16 0.33 -2.19 16 2 C -0.08 -1.74 2.55 -90.62 -0.23 -1.97 16 3 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.41 8.41 -34.44 -0.29 -14.70 16 6 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 9 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.06 1.13 5.14 -3.83 -0.02 1.11 16 14 N -0.69 -10.21 6.50 -113.77 -0.74 -10.95 16 15 C 0.06 0.76 5.14 -3.82 -0.02 0.74 16 16 C -0.08 -0.86 2.59 -90.62 -0.23 -1.09 16 17 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 18 C -0.15 -1.46 8.65 37.16 0.32 -1.14 16 19 C -0.05 -0.41 5.18 -27.88 -0.14 -0.56 16 20 C -0.16 -1.45 5.27 -36.00 -0.19 -1.64 16 21 C -0.15 -1.25 8.58 -41.21 -0.35 -1.60 16 22 C -0.13 -1.06 10.18 -41.21 -0.42 -1.48 16 23 C -0.22 -1.78 11.23 29.04 0.33 -1.45 16 24 S 0.10 0.86 23.33 -107.50 -2.51 -1.65 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.03 0.50 6.68 -51.93 -0.35 0.15 16 27 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.34 4.75 5.24 -39.29 -0.21 4.55 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.06 0.55 6.38 -51.93 -0.33 0.22 16 37 H 0.06 0.62 6.68 -51.93 -0.35 0.27 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 42 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.16 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 354.74 15.07 5.35 5.35 Total: -1.00 -29.98 354.74 -10.77 -40.76 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -7.44 Total: 0.05 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: -1.15 Total: -23.95 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.00 Total: -37.37 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.51 Total: -1.65 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.98 -10.77 -40.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602560584.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.842 kcal (2) G-P(sol) polarization free energy of solvation -29.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds