Wall clock time and date at job start Tue Mar 31 2020 05:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 N 1.46895 * 109.46799 * 294.99463 * 4 2 1 6 6 C 1.46907 * 111.00034 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47105 * 180.02562 * 6 5 4 8 8 H 1.08994 * 109.47055 * 305.00144 * 7 6 5 9 9 C 1.52999 * 109.47077 * 65.00055 * 7 6 5 10 10 C 1.52999 * 109.46757 * 185.00008 * 7 6 5 11 11 C 1.50706 * 109.46826 * 174.99994 * 10 7 6 12 12 H 1.07997 * 120.00106 * 0.02562 * 11 10 7 13 13 C 1.37880 * 119.99561 * 179.97438 * 11 10 7 14 14 N 1.31520 * 119.99534 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 120.00378 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47474 * 89.99517 * 15 13 11 17 17 H 1.48501 * 109.47235 * 210.00136 * 15 13 11 18 18 H 1.48510 * 109.46966 * 329.99813 * 15 13 11 19 19 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 20 20 C 1.50707 * 109.47009 * 65.00166 * 19 2 1 21 21 C 1.33378 * 125.20340 * 89.71998 * 20 19 2 22 22 C 1.38432 * 114.92138 * 179.86336 * 21 20 19 23 23 C 1.33381 * 114.92029 * 0.42713 * 22 21 20 24 24 S 1.75884 * 109.59363 * 359.77428 * 23 22 21 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 29 29 H 1.09000 * 109.46904 * 175.00284 * 4 2 1 30 30 H 1.00900 * 111.00812 * 303.95845 * 5 4 2 31 31 H 1.08999 * 109.46630 * 300.00316 * 6 5 4 32 32 H 1.09000 * 109.46642 * 60.00341 * 6 5 4 33 33 H 1.09001 * 109.46960 * 179.97438 * 9 7 6 34 34 H 1.09001 * 109.47213 * 299.99722 * 9 7 6 35 35 H 1.09002 * 109.47413 * 60.00064 * 9 7 6 36 36 H 1.09002 * 109.47141 * 295.00049 * 10 7 6 37 37 H 1.09005 * 109.47240 * 55.00180 * 10 7 6 38 38 H 0.96991 * 119.99723 * 179.97438 * 14 13 11 39 39 H 1.08994 * 109.47465 * 185.00197 * 19 2 1 40 40 H 1.08998 * 109.47565 * 305.00629 * 19 2 1 41 41 H 1.08001 * 122.53867 * 0.02562 * 21 20 19 42 42 H 1.08000 * 122.53855 * 180.20067 * 22 21 20 43 43 H 1.08002 * 125.20864 * 179.79447 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6515 0.0374 2.4456 6 6 2.1248 -0.6271 3.6673 7 6 1.7015 0.1904 4.8893 8 1 2.0612 1.2139 4.7840 9 6 0.1752 0.1947 4.9962 10 6 2.2995 -0.4331 6.1520 11 6 1.9855 0.4393 7.3401 12 1 1.4161 1.3474 7.2078 13 6 2.4245 0.0776 8.5961 14 7 2.1509 0.8392 9.6328 15 14 3.4088 -1.4934 8.8250 16 1 4.8563 -1.1968 8.6763 17 1 3.1532 -2.0447 10.1800 18 1 2.9995 -2.4877 7.8007 19 6 2.0400 -0.7213 -1.2492 20 6 1.6414 0.0570 -2.4766 21 6 2.3668 1.0212 -3.0449 22 6 1.7973 1.5940 -4.1691 23 6 0.6053 1.1010 -4.5085 24 16 0.1448 -0.1620 -3.3743 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.6054 -1.7199 1.2952 29 1 3.1263 -0.7995 1.2056 30 1 1.9882 0.9873 2.3967 31 1 1.6903 -1.6248 3.7297 32 1 3.2117 -0.7051 3.6405 33 1 -0.1263 0.7767 5.8671 34 1 -0.2508 0.6389 4.0966 35 1 -0.1845 -0.8289 5.1015 36 1 1.8718 -1.4239 6.3056 37 1 3.3804 -0.5175 6.0387 38 1 2.4594 0.5846 10.5165 39 1 3.1263 -0.7996 -1.2055 40 1 1.6054 -1.7198 -1.2952 41 1 3.3271 1.3298 -2.6588 42 1 2.2799 2.3829 -4.7269 43 1 0.0135 1.4272 -5.3510 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602560586.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:10 Heat of formation + Delta-G solvation = 1.299860 kcal Electronic energy + Delta-G solvation = -19148.358398 eV Core-core repulsion = 16318.926337 eV Total energy + Delta-G solvation = -2829.432061 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.60492 -37.39810 -35.73955 -33.31211 -31.85038 -30.03342 -27.54603 -26.74970 -26.09578 -24.34155 -23.03692 -21.81088 -20.61786 -19.32097 -18.94544 -17.36456 -16.74401 -15.76269 -15.54464 -14.99900 -14.86574 -14.26804 -14.12765 -13.65377 -13.26030 -13.17909 -13.01987 -12.62918 -12.52350 -12.28759 -12.17787 -11.92331 -11.67056 -11.63622 -11.19406 -11.06119 -10.93942 -10.88357 -10.78041 -10.62678 -10.34498 -9.89507 -9.63703 -9.39646 -9.03804 -8.85722 -8.67277 -8.49787 -8.14950 -6.00240 -3.96925 0.74866 1.38695 1.76243 2.49323 3.32196 3.39811 3.43694 4.24456 4.48352 4.55818 4.69937 4.80448 5.00331 5.07887 5.15550 5.31280 5.33380 5.40561 5.48427 5.57339 5.60202 5.72855 5.74511 5.85585 5.91121 5.97844 6.04485 6.06008 6.17517 6.26832 6.33224 6.38750 6.45026 6.61898 6.87964 7.06761 7.16984 7.28218 7.32805 7.50285 7.62736 7.85050 8.59637 9.05793 9.62757 11.13260 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.045117 B = 0.002462 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.460970 B =11372.187586 C =11501.531428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 H 0.071 0.929 4 C 0.063 3.937 5 N -0.684 5.684 6 C 0.062 3.938 7 C -0.073 4.073 8 H 0.059 0.941 9 C -0.124 4.124 10 C -0.010 4.010 11 C -0.512 4.512 12 H 0.074 0.926 13 C 0.064 3.936 14 N -0.905 5.905 15 Si 0.878 3.122 16 H -0.279 1.279 17 H -0.289 1.289 18 H -0.266 1.266 19 C -0.048 4.048 20 C -0.159 4.159 21 C -0.148 4.148 22 C -0.132 4.132 23 C -0.224 4.224 24 S 0.098 5.902 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.025 0.975 30 H 0.338 0.662 31 H 0.065 0.935 32 H 0.022 0.978 33 H 0.058 0.942 34 H 0.044 0.956 35 H 0.038 0.962 36 H 0.015 0.985 37 H 0.007 0.993 38 H 0.262 0.738 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.294 -2.166 -28.752 28.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 H 0.090 0.910 4 C -0.066 4.066 5 N -0.315 5.315 6 C -0.067 4.067 7 C -0.092 4.092 8 H 0.077 0.923 9 C -0.181 4.181 10 C -0.047 4.047 11 C -0.550 4.550 12 H 0.092 0.908 13 C -0.137 4.137 14 N -0.545 5.545 15 Si 0.706 3.294 16 H -0.205 1.205 17 H -0.215 1.215 18 H -0.191 1.191 19 C -0.087 4.087 20 C -0.276 4.276 21 C -0.177 4.177 22 C -0.162 4.162 23 C -0.360 4.360 24 S 0.362 5.638 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.043 0.957 30 H 0.155 0.845 31 H 0.084 0.916 32 H 0.041 0.959 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.034 0.966 37 H 0.026 0.974 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.156 0.844 42 H 0.155 0.845 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.164 -3.386 -28.398 28.773 hybrid contribution 2.781 0.369 0.008 2.805 sum -0.383 -3.017 -28.389 28.551 Atomic orbital electron populations 1.21839 0.94201 1.01825 1.02248 1.21128 0.97246 0.99504 0.92284 0.91016 1.21976 0.97071 0.97933 0.89663 1.60462 1.64206 1.05573 1.01251 1.22168 0.96495 0.98516 0.89485 1.20999 0.96571 0.98464 0.93203 0.92281 1.21590 0.95179 1.00743 1.00593 1.19620 0.95062 0.96641 0.93427 1.21140 1.34615 1.08773 0.90432 0.90825 1.25040 0.95911 0.96649 0.96082 1.69917 1.47014 1.38198 0.99362 0.86801 0.80672 0.84573 0.77347 1.20471 1.21484 1.19075 1.20263 1.01384 0.97711 0.89383 1.24510 0.98028 1.03025 1.02073 1.20132 1.02099 0.98162 0.97355 1.20163 0.95631 1.02192 0.98239 1.25618 1.01407 1.03730 1.05197 1.84365 1.20484 1.37342 1.21635 0.93120 0.90924 0.93142 0.91184 0.95668 0.84474 0.91631 0.95939 0.92304 0.93670 0.94278 0.96635 0.97443 0.92855 0.90042 0.90621 0.84430 0.84514 0.82156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.81 37.16 0.33 -1.15 16 2 C -0.08 -0.79 2.52 -90.62 -0.23 -1.01 16 3 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 4 C 0.06 0.70 5.07 -3.82 -0.02 0.68 16 5 N -0.68 -9.17 5.41 -113.77 -0.62 -9.79 16 6 C 0.06 1.00 5.07 -3.82 -0.02 0.98 16 7 C -0.07 -1.44 2.48 -90.62 -0.22 -1.67 16 8 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 9 C -0.12 -2.38 8.89 37.16 0.33 -2.05 16 10 C -0.01 -0.23 3.52 -27.88 -0.10 -0.33 16 11 C -0.51 -14.54 8.96 -34.44 -0.31 -14.85 16 12 H 0.07 2.25 7.30 -52.49 -0.38 1.86 16 13 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 14 N -0.91 -28.13 13.96 55.43 0.77 -27.36 16 15 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 18 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 19 C -0.05 -0.40 5.18 -27.88 -0.14 -0.54 16 20 C -0.16 -1.42 5.08 -36.00 -0.18 -1.60 16 21 C -0.15 -1.27 10.05 -41.21 -0.41 -1.69 16 22 C -0.13 -1.05 10.18 -41.21 -0.42 -1.47 16 23 C -0.22 -1.76 11.23 29.04 0.33 -1.44 16 24 S 0.10 0.84 21.89 -107.50 -2.35 -1.51 16 25 H 0.05 0.50 6.17 -51.93 -0.32 0.18 16 26 H 0.07 0.85 7.75 -51.93 -0.40 0.45 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.34 4.36 8.73 -39.29 -0.34 4.02 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 34 H 0.04 0.77 7.75 -51.93 -0.40 0.37 16 35 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 37 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 38 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 355.32 15.07 5.35 5.35 Total: -1.00 -30.29 355.32 -10.33 -40.61 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -7.64 Total: -0.23 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: -1.17 Total: -24.36 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.16 Total: -37.15 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.35 Total: -1.51 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.29 -10.33 -40.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602560586.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.912 kcal (2) G-P(sol) polarization free energy of solvation -30.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds