Wall clock time and date at job start Tue Mar 31 2020 05:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99989 * 2 1 3 5 5 C 1.50698 * 109.46933 * 294.99806 * 4 2 1 6 6 H 1.07995 * 120.00341 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99840 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00071 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99922 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47095 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47107 * 120.00101 * 9 7 5 12 12 H 1.48495 * 109.47358 * 239.99917 * 9 7 5 13 13 C 1.52999 * 109.46626 * 239.99528 * 2 1 3 14 14 N 1.46901 * 109.47168 * 65.00215 * 13 2 1 15 15 C 1.46897 * 111.00075 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47138 * 180.02562 * 15 14 13 17 17 H 1.08998 * 109.47091 * 305.00309 * 16 15 14 18 18 C 1.52999 * 109.47256 * 65.00286 * 16 15 14 19 19 C 1.53002 * 109.47229 * 185.00584 * 16 15 14 20 20 C 1.50700 * 109.46973 * 175.00514 * 19 16 15 21 21 C 1.33389 * 125.21010 * 89.71852 * 20 19 16 22 22 C 1.38421 * 114.92271 * 179.85516 * 21 20 19 23 23 C 1.33394 * 114.92216 * 0.43161 * 22 21 20 24 24 S 1.75887 * 109.59123 * 359.77003 * 23 22 21 25 25 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 26 26 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 27 27 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 29 29 H 1.09000 * 109.47325 * 174.99723 * 4 2 1 30 30 H 0.97004 * 119.99924 * 179.97438 * 8 7 5 31 31 H 1.09007 * 109.46705 * 184.99884 * 13 2 1 32 32 H 1.08993 * 109.47768 * 305.00075 * 13 2 1 33 33 H 1.00900 * 111.00246 * 303.95151 * 14 13 2 34 34 H 1.09003 * 109.47820 * 299.99998 * 15 14 13 35 35 H 1.09001 * 109.46958 * 60.00098 * 15 14 13 36 36 H 1.08999 * 109.47285 * 180.02562 * 18 16 15 37 37 H 1.09003 * 109.47167 * 300.00397 * 18 16 15 38 38 H 1.08998 * 109.47051 * 59.99999 * 18 16 15 39 39 H 1.09005 * 109.47003 * 294.99668 * 19 16 15 40 40 H 1.08990 * 109.47140 * 54.99995 * 19 16 15 41 41 H 1.08005 * 122.53404 * 0.02562 * 21 20 19 42 42 H 1.07996 * 122.54082 * 180.19456 * 22 21 20 43 43 H 1.07997 * 125.20209 * 179.79032 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 0.0571 2.4765 6 1 1.0801 0.9742 2.3757 7 6 1.9924 -0.4022 3.7283 8 7 2.6755 -1.5192 3.8512 9 14 1.4989 0.5630 5.2496 10 1 0.7425 1.7746 4.8433 11 1 0.6441 -0.2854 6.1184 12 1 2.7172 0.9668 5.9965 13 6 2.0399 -0.7214 -1.2492 14 7 1.6513 0.0372 -2.4456 15 6 2.1256 -0.6268 -3.6671 16 6 1.7032 0.1912 -4.8891 17 1 0.6243 0.3444 -4.8686 18 6 2.4113 1.5473 -4.8647 19 6 2.0872 -0.5618 -6.1645 20 6 1.5632 0.1835 -7.3649 21 6 2.2234 1.1337 -8.0287 22 6 1.5406 1.6758 -9.1039 23 6 0.3224 1.1722 -9.3079 24 16 -0.0156 -0.0614 -8.1005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6054 -1.7198 1.2952 29 1 3.1264 -0.7995 1.2056 30 1 2.9228 -1.8421 4.7318 31 1 3.1263 -0.7996 -1.2056 32 1 1.6053 -1.7199 -1.2951 33 1 0.6528 0.1792 -2.4753 34 1 3.2125 -0.7041 -3.6402 35 1 1.6918 -1.6248 -3.7299 36 1 2.1101 2.1302 -5.7351 37 1 2.1378 2.0837 -3.9561 38 1 3.4903 1.3941 -4.8852 39 1 3.1727 -0.6371 -6.2291 40 1 1.6544 -1.5618 -6.1402 41 1 3.2165 1.4538 -7.7499 42 1 1.9608 2.4507 -9.7279 43 1 -0.3529 1.4753 -10.0943 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602560588.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:12 Heat of formation + Delta-G solvation = -2.252681 kcal Electronic energy + Delta-G solvation = -19100.239779 eV Core-core repulsion = 16270.653668 eV Total energy + Delta-G solvation = -2829.586111 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.64853 -37.33660 -35.63928 -33.27018 -31.76225 -29.85626 -27.09246 -26.88015 -26.01598 -24.35681 -23.11261 -21.96900 -20.40661 -19.45533 -18.85900 -17.25380 -16.41100 -15.86539 -15.52191 -14.85983 -14.79136 -14.48768 -14.05306 -13.45986 -13.28999 -13.03544 -12.80535 -12.70349 -12.50269 -12.17428 -12.08138 -11.90699 -11.66760 -11.38720 -11.17422 -10.95977 -10.90307 -10.84914 -10.71702 -10.66938 -10.30200 -10.14829 -9.69409 -9.13667 -8.94031 -8.81712 -8.70458 -8.31701 -8.08710 -5.96176 -3.97075 0.77125 1.40341 1.77716 2.51903 3.33165 3.40735 3.44927 4.30533 4.49484 4.60923 4.74653 4.83559 4.98798 5.12587 5.30290 5.33650 5.39705 5.42119 5.51195 5.66127 5.70684 5.75949 5.85592 5.88829 5.96101 6.02227 6.07850 6.09815 6.24805 6.26203 6.29414 6.42491 6.49869 6.58861 6.97486 7.13186 7.19881 7.41083 7.68850 7.72576 7.88421 8.04449 8.48475 9.09610 9.66262 11.15402 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.046278 B = 0.002361 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.899671 B =11856.254305 C =11899.343903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.065 0.935 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.065 3.935 14 N -0.688 5.688 15 C 0.062 3.938 16 C -0.082 4.082 17 H 0.068 0.932 18 C -0.140 4.140 19 C -0.048 4.048 20 C -0.158 4.158 21 C -0.144 4.144 22 C -0.132 4.132 23 C -0.221 4.221 24 S 0.090 5.910 25 H 0.062 0.938 26 H 0.031 0.969 27 H 0.040 0.960 28 H 0.014 0.986 29 H 0.015 0.985 30 H 0.259 0.741 31 H 0.066 0.934 32 H 0.022 0.978 33 H 0.337 0.663 34 H 0.071 0.929 35 H 0.025 0.975 36 H 0.049 0.951 37 H 0.069 0.931 38 H 0.050 0.950 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.927 3.289 -26.450 26.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.083 0.917 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.064 4.064 14 N -0.319 5.319 15 C -0.067 4.067 16 C -0.102 4.102 17 H 0.087 0.913 18 C -0.197 4.197 19 C -0.087 4.087 20 C -0.275 4.275 21 C -0.174 4.174 22 C -0.162 4.162 23 C -0.357 4.357 24 S 0.353 5.647 25 H 0.081 0.919 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.032 0.968 29 H 0.033 0.967 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.040 0.960 33 H 0.155 0.845 34 H 0.089 0.911 35 H 0.043 0.957 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.157 0.843 42 H 0.155 0.845 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.548 2.661 -26.002 26.378 hybrid contribution 0.325 0.599 0.484 0.836 sum -3.223 3.259 -25.518 25.927 Atomic orbital electron populations 1.21741 0.96740 1.00383 1.00256 1.21214 0.94820 1.00074 0.94161 0.91664 1.19119 0.96128 0.95364 0.90427 1.21280 1.34459 1.08231 0.90972 0.92517 1.25031 0.95384 0.95108 0.99125 1.69977 1.39203 1.21283 1.23236 0.86574 0.78247 0.80127 0.83290 1.19752 1.21141 1.21089 1.22128 1.00283 0.94379 0.89588 1.60543 1.19469 1.50538 1.01399 1.21982 1.00676 0.94552 0.89527 1.21123 1.00600 0.96150 0.92290 0.91309 1.21772 0.99794 0.96001 1.02122 1.20260 1.01314 0.97505 0.89669 1.24519 0.97463 1.03177 1.02366 1.20139 1.02048 0.98342 0.96841 1.20182 0.94599 1.02221 0.99217 1.25572 1.01456 1.03744 1.04913 1.84358 1.16689 1.38763 1.24935 0.91899 0.94958 0.94083 0.96789 0.96677 0.93177 0.91552 0.95954 0.84464 0.91071 0.95723 0.93199 0.91170 0.93094 0.89747 0.90850 0.84306 0.84491 0.82161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 8.77 37.16 0.33 -2.18 16 2 C -0.08 -1.72 2.55 -90.62 -0.23 -1.95 16 3 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 4 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16 5 C -0.51 -14.39 8.41 -34.44 -0.29 -14.68 16 6 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 9 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.06 1.13 5.14 -3.82 -0.02 1.11 16 14 N -0.69 -9.95 5.95 -113.78 -0.68 -10.63 16 15 C 0.06 0.74 5.07 -3.83 -0.02 0.72 16 16 C -0.08 -0.84 2.52 -90.62 -0.23 -1.06 16 17 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 18 C -0.14 -1.47 8.77 37.16 0.33 -1.14 16 19 C -0.05 -0.42 5.19 -27.88 -0.14 -0.56 16 20 C -0.16 -1.45 5.27 -36.00 -0.19 -1.64 16 21 C -0.14 -1.25 8.58 -41.21 -0.35 -1.61 16 22 C -0.13 -1.06 10.18 -41.21 -0.42 -1.48 16 23 C -0.22 -1.77 11.23 29.04 0.33 -1.44 16 24 S 0.09 0.79 23.33 -107.50 -2.51 -1.72 16 25 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 26 H 0.03 0.51 6.68 -51.93 -0.35 0.16 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.34 4.68 6.98 -39.29 -0.27 4.41 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.05 0.50 6.38 -51.93 -0.33 0.17 16 37 H 0.07 0.85 7.75 -51.93 -0.40 0.45 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 42 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 357.00 15.07 5.38 5.38 Total: -1.00 -29.80 357.00 -10.79 -40.59 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -7.56 Total: -0.13 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: -1.14 Total: -23.89 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.06 Total: -37.03 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.51 Total: -1.72 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.80 -10.79 -40.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602560588.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.334 kcal (2) G-P(sol) polarization free energy of solvation -29.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds