Wall clock time and date at job start Tue Mar 31 2020 05:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35895 * 117.00202 * 2 1 4 4 C 1.38763 * 120.04251 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.99431 * 180.02562 * 4 3 2 6 6 C 1.38251 * 120.07778 * 0.26239 * 5 4 3 7 7 C 1.50696 * 119.95604 * 179.72019 * 6 5 4 8 8 N 1.46908 * 109.47156 * 104.99461 * 7 6 5 9 9 C 1.46903 * 111.00082 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47115 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.46907 * 54.99942 * 10 9 8 12 12 C 1.52998 * 109.46790 * 294.99967 * 10 9 8 13 13 C 1.52998 * 109.47147 * 174.99840 * 10 9 8 14 14 C 1.50701 * 109.47156 * 184.99896 * 13 10 9 15 15 H 1.08000 * 119.99926 * 0.02562 * 14 13 10 16 16 C 1.37877 * 120.00028 * 180.02562 * 14 13 10 17 17 N 1.31515 * 119.99960 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 120.00037 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.47016 * 90.00070 * 18 16 14 20 20 H 1.48494 * 109.47093 * 210.00296 * 18 16 14 21 21 H 1.48503 * 109.46922 * 330.00265 * 18 16 14 22 22 C 1.38473 * 120.08702 * 359.48449 * 6 5 4 23 23 F 1.35095 * 120.00144 * 180.26082 * 22 6 5 24 24 C 1.38388 * 120.00405 * 0.51149 * 22 6 5 25 25 H 1.09000 * 109.47231 * 300.00303 * 1 2 3 26 26 H 1.08999 * 109.47033 * 59.99784 * 1 2 3 27 27 H 1.09000 * 109.47106 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.00841 * 0.02562 * 4 3 2 29 29 H 1.08002 * 119.95749 * 179.97438 * 5 4 3 30 30 H 1.08998 * 109.47526 * 224.99621 * 7 6 5 31 31 H 1.09007 * 109.47312 * 345.00075 * 7 6 5 32 32 H 1.00894 * 111.00226 * 303.95780 * 8 7 6 33 33 H 1.09007 * 109.46764 * 300.00027 * 9 8 7 34 34 H 1.08997 * 109.47117 * 59.99989 * 9 8 7 35 35 H 1.08996 * 109.47585 * 59.99975 * 12 10 9 36 36 H 1.09005 * 109.46878 * 180.02562 * 12 10 9 37 37 H 1.09000 * 109.47375 * 299.99688 * 12 10 9 38 38 H 1.08999 * 109.47005 * 304.99899 * 13 10 9 39 39 H 1.09003 * 109.46975 * 64.99720 * 13 10 9 40 40 H 0.97002 * 119.99519 * 179.97438 * 17 16 14 41 41 H 1.07994 * 120.04338 * 179.77075 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4317 1.2844 0.0005 5 6 4.0579 2.5158 0.0011 6 6 3.3055 3.6757 0.0066 7 6 3.9915 5.0174 0.0135 8 7 3.8958 5.6232 -1.3214 9 6 4.5558 6.9353 -1.3527 10 6 4.4349 7.5337 -2.7556 11 1 3.3851 7.5681 -3.0467 12 6 5.2113 6.6663 -3.7485 13 6 5.0113 8.9509 -2.7570 14 6 4.7820 9.5852 -4.1046 15 1 4.2754 9.0328 -4.8822 16 6 5.2190 10.8706 -4.3449 17 7 5.0184 11.4243 -5.5208 18 14 6.0946 11.8263 -2.9997 19 1 7.5561 11.5785 -3.0876 20 1 5.8274 13.2771 -3.1690 21 1 5.5963 11.3827 -1.6729 22 6 1.9226 3.6061 0.0007 23 9 1.1891 4.7406 0.0008 24 6 1.2916 2.3744 0.0001 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 4.0207 0.3792 0.0005 29 1 5.1364 2.5724 0.0019 30 1 3.5096 5.6682 0.7431 31 1 5.0407 4.8878 0.2792 32 1 4.2782 5.0097 -2.0252 33 1 4.0780 7.5995 -0.6324 34 1 5.6087 6.8186 -1.0965 35 1 4.8007 5.6567 -3.7475 36 1 5.1256 7.0929 -4.7479 37 1 6.2612 6.6319 -3.4574 38 1 4.5180 9.5445 -1.9873 39 1 6.0812 8.9082 -2.5528 40 1 5.3255 12.3288 -5.6897 41 1 0.2131 2.3194 -0.0007 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602569524.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:13 Heat of formation + Delta-G solvation = -72.178890 kcal Electronic energy + Delta-G solvation = -21306.053307 eV Core-core repulsion = 17907.221792 eV Total energy + Delta-G solvation = -3398.831515 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.90244 -40.38259 -38.11500 -36.76525 -34.11964 -32.15324 -30.99442 -30.50120 -28.02213 -27.35972 -25.89057 -24.19225 -22.97741 -21.89843 -21.43032 -19.02173 -18.73538 -17.28946 -16.86656 -16.24106 -16.18634 -16.00358 -15.52565 -14.93603 -14.80248 -14.62278 -14.19260 -13.96702 -13.66383 -13.47627 -12.89655 -12.81574 -12.60372 -12.25682 -12.07120 -11.92927 -11.67310 -11.48782 -11.38174 -11.18124 -10.99844 -10.70517 -10.39227 -9.78187 -9.70318 -9.44155 -9.16839 -9.03101 -8.48939 -8.44179 -8.18764 -5.99145 -3.95863 0.91486 0.98671 2.84959 3.28876 3.33360 3.40931 3.44921 4.07441 4.36012 4.46659 4.49467 4.63117 4.68274 4.76673 4.77861 4.98346 5.08844 5.22684 5.33247 5.34515 5.55553 5.68720 5.71991 5.77530 5.83183 5.92147 5.98274 6.14200 6.16806 6.39837 6.43112 6.49139 6.78661 6.97174 6.99452 7.09033 7.23701 7.35639 7.50802 7.61701 7.85844 8.60643 9.06799 9.63824 11.14341 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.036204 B = 0.002837 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.207838 B = 9865.888252 C = 9924.589093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.313 6.313 3 C 0.154 3.846 4 C -0.165 4.165 5 C -0.047 4.047 6 C -0.154 4.154 7 C 0.102 3.898 8 N -0.684 5.684 9 C 0.063 3.937 10 C -0.075 4.075 11 H 0.072 0.928 12 C -0.136 4.136 13 C -0.008 4.008 14 C -0.512 4.512 15 H 0.074 0.926 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.878 3.122 19 H -0.279 1.279 20 H -0.289 1.289 21 H -0.266 1.266 22 C 0.168 3.832 23 F -0.123 7.123 24 C -0.252 4.252 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.341 0.659 33 H 0.067 0.933 34 H 0.024 0.976 35 H 0.034 0.966 36 H 0.068 0.932 37 H 0.040 0.960 38 H 0.015 0.985 39 H 0.009 0.991 40 H 0.262 0.738 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.551 -23.220 14.277 27.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.227 6.227 3 C 0.108 3.892 4 C -0.184 4.184 5 C -0.065 4.065 6 C -0.156 4.156 7 C -0.027 4.027 8 N -0.316 5.316 9 C -0.066 4.066 10 C -0.094 4.094 11 H 0.090 0.910 12 C -0.193 4.193 13 C -0.046 4.046 14 C -0.550 4.550 15 H 0.092 0.908 16 C -0.136 4.136 17 N -0.545 5.545 18 Si 0.706 3.294 19 H -0.205 1.205 20 H -0.215 1.215 21 H -0.191 1.191 22 C 0.148 3.852 23 F -0.102 7.102 24 C -0.271 4.271 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.120 0.880 28 H 0.154 0.846 29 H 0.156 0.844 30 H 0.098 0.902 31 H 0.058 0.942 32 H 0.160 0.840 33 H 0.086 0.914 34 H 0.043 0.957 35 H 0.053 0.947 36 H 0.087 0.913 37 H 0.059 0.941 38 H 0.033 0.967 39 H 0.028 0.972 40 H 0.071 0.929 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.099 -22.926 14.292 27.696 hybrid contribution 0.967 0.713 0.600 1.343 sum -5.132 -22.213 14.892 27.231 Atomic orbital electron populations 1.23120 0.78030 1.04170 1.01736 1.86090 1.21720 1.26435 1.88409 1.18711 0.92078 0.83639 0.94787 1.20422 0.91214 0.98817 1.07967 1.20782 1.00012 0.90198 0.95525 1.19873 0.91935 0.96585 1.07188 1.20726 0.97660 0.91086 0.93186 1.60584 1.61667 1.05239 1.04110 1.22179 0.95376 0.89311 0.99721 1.21027 1.00694 0.96189 0.91515 0.90992 1.21750 0.98711 0.97503 1.01330 1.19603 0.95316 0.91793 0.97918 1.21139 1.37533 0.99036 0.97284 0.90824 1.25035 0.95758 0.97589 0.95266 1.69919 1.47652 1.14948 1.21985 0.86798 0.80211 0.79103 0.83277 1.20459 1.21498 1.19054 1.17160 0.88627 0.81546 0.97907 1.91551 1.76837 1.48762 1.93012 1.21157 1.01121 0.91268 1.13569 0.92433 0.92296 0.87999 0.84610 0.84424 0.90152 0.94181 0.84039 0.91409 0.95733 0.94719 0.91338 0.94085 0.96665 0.97250 0.92858 0.84291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -2.86 10.50 -19.41 -0.20 -3.06 16 3 C 0.15 1.54 6.69 -39.23 -0.26 1.28 16 4 C -0.17 -1.53 9.99 -39.42 -0.39 -1.92 16 5 C -0.05 -0.44 9.66 -39.61 -0.38 -0.82 16 6 C -0.15 -1.77 5.40 -104.53 -0.56 -2.33 16 7 C 0.10 1.25 5.49 -4.97 -0.03 1.23 16 8 N -0.68 -10.02 6.49 -115.05 -0.75 -10.76 16 9 C 0.06 1.04 5.14 -3.82 -0.02 1.02 16 10 C -0.08 -1.51 2.54 -90.62 -0.23 -1.74 16 11 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 12 C -0.14 -2.51 8.77 37.16 0.33 -2.19 16 13 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 14 C -0.51 -14.62 8.96 -34.44 -0.31 -14.93 16 15 H 0.07 2.26 7.30 -52.49 -0.38 1.87 16 16 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 17 N -0.91 -28.24 13.96 55.43 0.77 -27.47 16 18 Si 0.88 22.02 27.47 -169.99 -4.67 17.36 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 21 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 22 C 0.17 2.07 7.24 -39.44 -0.29 1.78 16 23 F -0.12 -1.76 16.75 2.25 0.04 -1.72 16 24 C -0.25 -2.63 9.02 -39.36 -0.35 -2.99 16 25 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 26 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 27 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 29 H 0.14 0.99 8.00 -52.49 -0.42 0.57 16 30 H 0.08 1.03 8.08 -51.93 -0.42 0.61 16 31 H 0.04 0.43 7.95 -51.93 -0.41 0.02 16 32 H 0.34 4.76 6.97 -39.30 -0.27 4.48 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.03 0.54 6.68 -51.93 -0.35 0.20 16 36 H 0.07 1.43 6.95 -51.93 -0.36 1.07 16 37 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 39 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 40 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 41 H 0.14 1.20 6.30 -52.49 -0.33 0.87 16 LS Contribution 339.02 15.07 5.11 5.11 Total: -1.00 -31.95 339.02 -7.62 -39.57 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -6.21 Total: -0.03 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -1.71 Total: -18.99 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.03 Total: -38.23 kcal Atomic # 8 Polarization: -2.86 SS G_CDS: -0.20 Total: -3.06 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.95 -7.62 -39.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602569524.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.612 kcal (2) G-P(sol) polarization free energy of solvation -31.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds