Wall clock time and date at job start Tue Mar 31 2020 05:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35905 * 117.00124 * 2 1 4 4 C 1.38715 * 120.04123 * 0.02562 * 3 2 1 5 5 C 1.38341 * 119.92144 * 180.02562 * 4 3 2 6 6 F 1.35102 * 119.99842 * 179.97438 * 5 4 3 7 7 C 1.38515 * 120.00202 * 359.97438 * 5 4 3 8 8 C 1.38205 * 120.08789 * 0.04339 * 7 5 4 9 9 C 1.50701 * 119.96035 * 179.97438 * 8 7 5 10 10 N 1.46902 * 109.46972 * 269.97649 * 9 8 7 11 11 C 1.46901 * 110.99586 * 179.97438 * 10 9 8 12 12 C 1.53004 * 109.46853 * 179.97438 * 11 10 9 13 13 H 1.09007 * 109.46812 * 55.00356 * 12 11 10 14 14 C 1.52996 * 109.47652 * 295.00226 * 12 11 10 15 15 C 1.53000 * 109.47119 * 175.00126 * 12 11 10 16 16 C 1.50700 * 109.47207 * 185.00840 * 15 12 11 17 17 H 1.08000 * 120.00093 * 359.97438 * 16 15 12 18 18 C 1.37875 * 120.00385 * 180.02562 * 16 15 12 19 19 N 1.31524 * 119.99646 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00381 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47382 * 89.99444 * 20 18 16 22 22 H 1.48498 * 109.46875 * 209.99708 * 20 18 16 23 23 H 1.48499 * 109.46996 * 329.99550 * 20 18 16 24 24 C 1.38179 * 120.08042 * 359.95428 * 8 7 5 25 25 H 1.08999 * 109.47123 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46764 * 299.99306 * 1 2 3 27 27 H 1.08998 * 109.47473 * 59.99333 * 1 2 3 28 28 H 1.08003 * 120.03900 * 359.74950 * 4 3 2 29 29 H 1.08005 * 119.95380 * 180.02562 * 7 5 4 30 30 H 1.08992 * 109.47304 * 29.97535 * 9 8 7 31 31 H 1.09006 * 109.46949 * 149.97749 * 9 8 7 32 32 H 1.00895 * 110.99814 * 303.94991 * 10 9 8 33 33 H 1.08994 * 109.47737 * 300.00001 * 11 10 9 34 34 H 1.09005 * 109.47333 * 60.00607 * 11 10 9 35 35 H 1.08998 * 109.46941 * 300.00133 * 14 12 11 36 36 H 1.09003 * 109.46889 * 59.99669 * 14 12 11 37 37 H 1.08997 * 109.47695 * 179.97438 * 14 12 11 38 38 H 1.09002 * 109.47145 * 305.00046 * 15 12 11 39 39 H 1.08997 * 109.47311 * 65.00294 * 15 12 11 40 40 H 0.96995 * 119.99748 * 180.02562 * 19 18 16 41 41 H 1.07994 * 120.00368 * 180.02562 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3748 0.0005 5 6 1.9220 3.6061 0.0000 6 9 1.1886 4.7407 0.0000 7 6 3.3054 3.6757 -0.0005 8 6 4.0575 2.5162 -0.0014 9 6 5.5625 2.5953 -0.0026 10 7 6.0504 2.6208 -1.3880 11 6 7.5168 2.6985 -1.4283 12 6 7.9864 2.7224 -2.8843 13 1 7.4932 3.5390 -3.4117 14 6 7.6328 1.3941 -3.5561 15 6 9.5018 2.9285 -2.9280 16 6 9.9477 3.0751 -4.3601 17 1 9.2228 3.0257 -5.1591 18 6 11.2812 3.2712 -4.6504 19 7 12.1641 3.3308 -3.6773 20 14 11.8340 3.4521 -6.4255 21 1 11.7948 4.8851 -6.8126 22 1 13.2202 2.9388 -6.5669 23 1 10.9263 2.6760 -7.3081 24 6 3.4313 1.2845 -0.0009 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 0.2127 2.3198 -0.0031 29 1 3.7970 4.6375 -0.0005 30 1 5.8790 3.5032 0.5108 31 1 5.9724 1.7257 0.5110 32 1 5.7160 1.8208 -1.9038 33 1 7.8465 3.6073 -0.9249 34 1 7.9407 1.8298 -0.9244 35 1 8.1259 0.5776 -3.0287 36 1 6.5532 1.2472 -3.5249 37 1 7.9669 1.4113 -4.5935 38 1 9.7621 3.8296 -2.3726 39 1 9.9986 2.0686 -2.4789 40 1 13.1022 3.4692 -3.8815 41 1 4.0202 0.3793 -0.0012 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602576609.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:16 Heat of formation + Delta-G solvation = -95.335796 kcal Electronic energy + Delta-G solvation = -21042.955305 eV Core-core repulsion = 17643.119631 eV Total energy + Delta-G solvation = -3399.835674 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.97996 -41.15715 -39.05817 -37.96845 -35.61833 -34.02207 -31.81897 -31.28804 -28.94153 -28.27742 -27.34722 -25.85067 -23.93935 -23.62319 -22.24738 -20.66483 -19.12401 -18.50338 -18.07332 -17.23263 -17.01505 -16.96580 -16.58974 -16.57951 -16.36276 -15.68751 -15.53937 -15.30813 -14.76302 -14.35435 -14.15839 -14.01726 -13.51493 -13.27838 -13.24052 -13.05544 -12.92423 -12.76263 -12.53464 -12.41051 -12.24878 -12.19267 -11.94080 -11.84524 -11.47098 -11.04864 -10.93280 -10.51492 -9.92577 -9.33345 -9.30509 -8.15988 -6.24635 0.03302 0.22915 1.41307 1.42118 1.52977 2.22062 2.42721 2.46513 3.13456 3.17584 3.38455 3.65458 3.91147 3.96072 4.14271 4.24670 4.24835 4.33669 4.35374 4.38162 4.46390 4.54183 4.68523 4.74193 4.81899 4.89250 4.98422 5.01302 5.06880 5.11796 5.26710 5.40638 5.44250 5.51251 5.57570 5.63020 5.82450 5.91849 6.05648 6.30133 6.33374 6.47892 6.91557 7.43474 8.96041 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.028094 B = 0.002703 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.422777 B =10356.530970 C =10667.263607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.325 6.325 3 C 0.152 3.848 4 C -0.245 4.245 5 C 0.124 3.876 6 F -0.143 7.143 7 C -0.176 4.176 8 C -0.012 4.012 9 C 0.096 3.904 10 N -0.686 5.686 11 C 0.077 3.923 12 C -0.076 4.076 13 H 0.055 0.945 14 C -0.127 4.127 15 C 0.032 3.968 16 C -0.528 4.528 17 H 0.060 0.940 18 C -0.003 4.003 19 N -0.935 5.935 20 Si 0.960 3.040 21 H -0.275 1.275 22 H -0.284 1.284 23 H -0.263 1.263 24 C -0.160 4.160 25 H 0.122 0.878 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.159 0.841 29 H 0.140 0.860 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.345 0.655 33 H 0.062 0.938 34 H 0.030 0.970 35 H 0.042 0.958 36 H 0.065 0.935 37 H 0.043 0.957 38 H -0.012 1.012 39 H -0.008 1.008 40 H 0.262 0.738 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.818 -5.710 9.888 27.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.238 6.238 3 C 0.106 3.894 4 C -0.264 4.264 5 C 0.104 3.896 6 F -0.122 7.122 7 C -0.196 4.196 8 C -0.013 4.013 9 C -0.032 4.032 10 N -0.319 5.319 11 C -0.052 4.052 12 C -0.095 4.095 13 H 0.074 0.926 14 C -0.185 4.185 15 C -0.005 4.005 16 C -0.566 4.566 17 H 0.078 0.922 18 C -0.200 4.200 19 N -0.576 5.576 20 Si 0.785 3.215 21 H -0.200 1.200 22 H -0.209 1.209 23 H -0.188 1.188 24 C -0.180 4.180 25 H 0.141 0.859 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.176 0.824 29 H 0.158 0.842 30 H 0.106 0.894 31 H 0.074 0.926 32 H 0.165 0.835 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.006 0.994 39 H 0.010 0.990 40 H 0.070 0.930 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -24.681 -5.175 9.856 27.075 hybrid contribution 0.651 -0.186 -0.504 0.844 sum -24.030 -5.361 9.352 26.337 Atomic orbital electron populations 1.23421 0.76141 1.05950 1.02438 1.86105 1.23708 1.25826 1.88195 1.18700 0.91980 0.84198 0.94545 1.21286 1.02087 0.90617 1.12431 1.17474 0.89249 0.81723 1.01119 1.91491 1.77376 1.49459 1.93832 1.21056 0.91633 1.00451 1.06454 1.19365 0.95414 0.91363 0.95145 1.20938 0.89138 1.02735 0.90389 1.60521 1.09538 1.49028 1.12803 1.21870 0.86640 1.00053 0.96617 1.21022 0.95854 0.98004 0.94635 0.92644 1.21654 1.00114 0.96208 1.00476 1.19008 0.91600 0.94481 0.95427 1.21652 0.92899 1.48198 0.93881 0.92195 1.25938 0.97192 0.95287 1.01559 1.70099 1.02334 1.51511 1.33686 0.85525 0.77494 0.78534 0.79983 1.20030 1.20924 1.18755 1.20544 0.91766 0.98669 1.06987 0.85945 0.91418 0.91678 0.82384 0.84192 0.89363 0.92644 0.83506 0.91959 0.95225 0.93846 0.91643 0.93772 0.99393 0.98987 0.92970 0.83803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.24 16 2 O -0.32 -5.60 10.50 -92.48 -0.97 -6.57 16 3 C 0.15 2.91 6.69 22.50 0.15 3.07 16 4 C -0.24 -4.48 9.02 22.41 0.20 -4.27 16 5 C 0.12 2.65 7.30 22.36 0.16 2.81 16 6 F -0.14 -3.22 17.27 44.97 0.78 -2.45 16 7 C -0.18 -3.87 9.68 22.33 0.22 -3.65 16 8 C -0.01 -0.26 5.39 -19.89 -0.11 -0.36 16 9 C 0.10 2.13 5.81 85.56 0.50 2.62 16 10 N -0.69 -18.63 6.49 -517.92 -3.36 -21.99 16 11 C 0.08 2.55 5.14 86.30 0.44 2.99 16 12 C -0.08 -3.08 2.54 -10.79 -0.03 -3.11 16 13 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 14 C -0.13 -4.58 8.77 71.98 0.63 -3.95 16 15 C 0.03 1.70 4.45 29.85 0.13 1.83 16 16 C -0.53 -29.94 8.41 25.60 0.22 -29.72 16 17 H 0.06 3.28 7.06 -2.91 -0.02 3.26 16 18 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 19 N -0.94 -57.31 13.29 21.45 0.28 -57.03 16 20 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 21 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 23 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 24 C -0.16 -3.20 9.64 22.37 0.22 -2.99 16 25 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.07 0.47 7.66 -2.38 -0.02 0.45 16 27 H 0.06 0.50 7.66 -2.39 -0.02 0.48 16 28 H 0.16 2.12 6.30 -2.91 -0.02 2.10 16 29 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 30 H 0.09 1.90 8.08 -2.39 -0.02 1.88 16 31 H 0.06 1.11 8.08 -2.38 -0.02 1.09 16 32 H 0.35 8.82 6.98 -89.70 -0.63 8.20 16 33 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.06 1.91 6.68 -2.39 -0.02 1.90 16 37 H 0.04 1.74 6.95 -2.39 -0.02 1.73 16 38 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 39 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 40 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 41 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -65.77 343.36 3.46 -62.31 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.40 Total: 12.17 kcal Atomic # 6 Polarization: -37.49 SS G_CDS: 4.31 Total: -33.18 kcal Atomic # 7 Polarization: -75.94 SS G_CDS: -3.08 Total: -79.02 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.97 Total: -6.57 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.78 Total: -2.45 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -65.77 3.46 -62.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602576609.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.024 kcal (2) G-P(sol) polarization free energy of solvation -65.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds