Wall clock time and date at job start Tue Mar 31 2020 05:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35905 * 117.00124 * 2 1 4 4 C 1.38715 * 120.04123 * 0.02562 * 3 2 1 5 5 C 1.38341 * 119.92144 * 180.02562 * 4 3 2 6 6 F 1.35102 * 119.99842 * 179.97438 * 5 4 3 7 7 C 1.38515 * 120.00202 * 359.97438 * 5 4 3 8 8 C 1.38205 * 120.08789 * 0.04339 * 7 5 4 9 9 C 1.50701 * 119.96035 * 179.97438 * 8 7 5 10 10 N 1.46902 * 109.46972 * 269.97649 * 9 8 7 11 11 C 1.46901 * 110.99586 * 179.97438 * 10 9 8 12 12 C 1.53004 * 109.46853 * 179.97438 * 11 10 9 13 13 H 1.08993 * 109.47405 * 305.00390 * 12 11 10 14 14 C 1.53006 * 109.46763 * 65.00267 * 12 11 10 15 15 C 1.53002 * 109.47151 * 184.99823 * 12 11 10 16 16 C 1.50697 * 109.47032 * 175.00310 * 15 12 11 17 17 H 1.08002 * 120.00101 * 0.02562 * 16 15 12 18 18 C 1.37879 * 120.00186 * 180.02562 * 16 15 12 19 19 N 1.31510 * 120.00174 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99886 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47389 * 89.99460 * 20 18 16 22 22 H 1.48494 * 109.47208 * 209.99694 * 20 18 16 23 23 H 1.48501 * 109.46868 * 329.99740 * 20 18 16 24 24 C 1.38179 * 120.08042 * 359.95428 * 8 7 5 25 25 H 1.08999 * 109.47123 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46764 * 299.99306 * 1 2 3 27 27 H 1.08998 * 109.47473 * 59.99333 * 1 2 3 28 28 H 1.08003 * 120.03900 * 359.74950 * 4 3 2 29 29 H 1.08005 * 119.95380 * 180.02562 * 7 5 4 30 30 H 1.08992 * 109.47304 * 29.97535 * 9 8 7 31 31 H 1.09006 * 109.46949 * 149.97749 * 9 8 7 32 32 H 1.00895 * 110.99814 * 303.94991 * 10 9 8 33 33 H 1.08994 * 109.47737 * 300.00001 * 11 10 9 34 34 H 1.09005 * 109.47333 * 60.00607 * 11 10 9 35 35 H 1.09000 * 109.47059 * 179.97438 * 14 12 11 36 36 H 1.08995 * 109.47249 * 300.00056 * 14 12 11 37 37 H 1.09000 * 109.47017 * 60.00284 * 14 12 11 38 38 H 1.08993 * 109.47296 * 295.00238 * 15 12 11 39 39 H 1.09005 * 109.46657 * 55.00602 * 15 12 11 40 40 H 0.96995 * 120.00083 * 180.02562 * 19 18 16 41 41 H 1.07994 * 120.00368 * 180.02562 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3748 0.0005 5 6 1.9220 3.6061 0.0000 6 9 1.1886 4.7407 0.0000 7 6 3.3054 3.6757 -0.0005 8 6 4.0575 2.5162 -0.0014 9 6 5.5625 2.5953 -0.0026 10 7 6.0504 2.6208 -1.3880 11 6 7.5168 2.6985 -1.4283 12 6 7.9864 2.7224 -2.8843 13 1 7.5823 1.8577 -3.4106 14 6 7.4944 4.0051 -3.5578 15 6 9.5151 2.6775 -2.9279 16 6 9.9740 2.5772 -4.3598 17 1 9.2480 2.5488 -5.1588 18 6 11.3208 2.5218 -4.6498 19 7 11.7213 2.4337 -5.8993 20 14 12.5766 2.5702 -3.2677 21 1 12.8701 1.1861 -2.8167 22 1 13.8260 3.2070 -3.7563 23 1 12.0320 3.3561 -2.1315 24 6 3.4313 1.2845 -0.0009 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 0.2127 2.3198 -0.0031 29 1 3.7970 4.6375 -0.0005 30 1 5.8790 3.5032 0.5108 31 1 5.9724 1.7257 0.5110 32 1 5.7160 1.8208 -1.9038 33 1 7.8465 3.6073 -0.9249 34 1 7.9407 1.8298 -0.9244 35 1 7.8293 4.0224 -4.5949 36 1 6.4054 4.0372 -3.5267 37 1 7.8986 4.8699 -3.0314 38 1 9.9182 3.5857 -2.4799 39 1 9.8691 1.8097 -2.3712 40 1 12.6688 2.3943 -6.1033 41 1 4.0202 0.3793 -0.0012 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602576610.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:19 Heat of formation + Delta-G solvation = -73.711907 kcal Electronic energy + Delta-G solvation = -21079.020244 eV Core-core repulsion = 17680.122252 eV Total energy + Delta-G solvation = -3398.897992 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.13749 -40.43527 -38.18603 -36.70082 -34.18166 -32.20411 -30.86712 -30.53113 -27.84509 -27.43924 -26.16390 -24.23589 -22.88824 -21.95686 -21.45613 -19.22688 -18.28337 -17.31456 -16.74649 -16.46629 -16.27736 -16.17968 -15.63089 -15.28346 -14.88148 -14.73396 -14.34735 -14.01208 -13.57962 -13.36182 -12.97706 -12.62435 -12.48480 -12.34245 -12.05265 -11.74891 -11.69532 -11.66141 -11.44659 -11.22487 -10.93756 -10.69305 -10.37491 -9.91012 -9.64906 -9.47844 -9.09590 -9.03583 -8.54647 -8.50123 -8.24823 -6.00419 -3.97313 0.82878 1.02059 2.83118 3.26155 3.32176 3.39910 3.43417 3.92560 4.29763 4.48116 4.54212 4.60080 4.71108 4.74855 4.77276 4.95829 5.08472 5.12130 5.26787 5.33168 5.48790 5.60348 5.73224 5.75617 5.80154 5.88543 6.03081 6.24059 6.29786 6.39101 6.42258 6.59891 6.85451 6.97315 7.04537 7.13657 7.21059 7.30486 7.47449 7.54804 7.84396 8.59204 9.05603 9.62436 11.13083 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.027952 B = 0.002810 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.492534 B = 9960.676108 C =10288.138022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.311 6.311 3 C 0.155 3.845 4 C -0.249 4.249 5 C 0.137 3.863 6 F -0.138 7.138 7 C -0.167 4.167 8 C -0.008 4.008 9 C 0.095 3.905 10 N -0.681 5.681 11 C 0.061 3.939 12 C -0.074 4.074 13 H 0.060 0.940 14 C -0.125 4.125 15 C -0.009 4.009 16 C -0.512 4.512 17 H 0.074 0.926 18 C 0.064 3.936 19 N -0.905 5.905 20 Si 0.878 3.122 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.266 1.266 24 C -0.156 4.156 25 H 0.102 0.898 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.085 0.915 31 H 0.043 0.957 32 H 0.342 0.658 33 H 0.068 0.932 34 H 0.026 0.974 35 H 0.059 0.941 36 H 0.044 0.956 37 H 0.039 0.961 38 H 0.016 0.984 39 H 0.008 0.992 40 H 0.262 0.738 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.442 -1.939 15.567 27.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.224 6.224 3 C 0.110 3.890 4 C -0.269 4.269 5 C 0.117 3.883 6 F -0.116 7.116 7 C -0.187 4.187 8 C -0.009 4.009 9 C -0.034 4.034 10 N -0.312 5.312 11 C -0.067 4.067 12 C -0.093 4.093 13 H 0.078 0.922 14 C -0.182 4.182 15 C -0.047 4.047 16 C -0.550 4.550 17 H 0.092 0.908 18 C -0.136 4.136 19 N -0.545 5.545 20 Si 0.706 3.294 21 H -0.205 1.205 22 H -0.215 1.215 23 H -0.191 1.191 24 C -0.175 4.175 25 H 0.120 0.880 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.156 0.844 29 H 0.157 0.843 30 H 0.103 0.897 31 H 0.061 0.939 32 H 0.160 0.840 33 H 0.087 0.913 34 H 0.044 0.956 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.034 0.966 39 H 0.026 0.974 40 H 0.072 0.928 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -22.301 -1.415 15.390 27.133 hybrid contribution 0.564 -0.566 0.860 1.174 sum -21.738 -1.982 16.251 27.213 Atomic orbital electron populations 1.23114 0.78091 1.04231 1.01559 1.86116 1.21644 1.26296 1.88390 1.18627 0.91922 0.83688 0.94804 1.21097 1.00985 0.91294 1.13541 1.17340 0.89205 0.81413 1.00320 1.91508 1.77316 1.49098 1.93683 1.20956 0.91308 1.00207 1.06183 1.19451 0.95842 0.91161 0.94458 1.20925 0.88793 1.01925 0.91781 1.60547 1.11216 1.48516 1.10927 1.22221 0.85235 1.00074 0.99208 1.21012 0.97693 0.98543 0.92030 0.92169 1.21601 0.99098 0.96437 1.01075 1.19616 0.91066 0.96061 0.97964 1.21136 0.92651 1.49852 0.91405 0.90818 1.25034 0.98549 0.94802 0.95246 1.69912 1.15498 1.51312 1.17758 0.86803 0.81030 0.78481 0.83093 1.20451 1.21496 1.19052 1.20395 0.91252 0.98581 1.07314 0.87950 0.92508 0.92387 0.84408 0.84252 0.89693 0.93882 0.84015 0.91330 0.95568 0.92241 0.93655 0.94207 0.96581 0.97376 0.92838 0.84606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -2.96 10.50 -19.44 -0.20 -3.17 16 3 C 0.16 1.59 6.69 -39.23 -0.26 1.33 16 4 C -0.25 -2.45 9.02 -39.37 -0.35 -2.80 16 5 C 0.14 1.49 7.30 -39.44 -0.29 1.21 16 6 F -0.14 -1.57 17.27 2.25 0.04 -1.53 16 7 C -0.17 -1.82 9.68 -39.49 -0.38 -2.20 16 8 C -0.01 -0.09 5.39 -104.65 -0.56 -0.65 16 9 C 0.09 1.03 5.81 -4.97 -0.03 1.00 16 10 N -0.68 -9.04 5.94 -115.05 -0.68 -9.73 16 11 C 0.06 0.95 5.08 -3.82 -0.02 0.93 16 12 C -0.07 -1.43 2.48 -90.61 -0.22 -1.65 16 13 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 14 C -0.12 -2.38 8.89 37.16 0.33 -2.05 16 15 C -0.01 -0.22 3.52 -27.88 -0.10 -0.31 16 16 C -0.51 -14.47 8.96 -34.44 -0.31 -14.78 16 17 H 0.07 2.24 7.30 -52.49 -0.38 1.86 16 18 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 19 N -0.91 -28.05 13.96 55.43 0.77 -27.28 16 20 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 24 C -0.16 -1.63 9.64 -39.42 -0.38 -2.01 16 25 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.26 7.66 -51.93 -0.40 -0.13 16 27 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 28 H 0.14 1.06 6.30 -52.48 -0.33 0.73 16 29 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 30 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 31 H 0.04 0.44 8.08 -51.93 -0.42 0.02 16 32 H 0.34 4.43 8.72 -39.29 -0.34 4.09 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 1.27 6.95 -51.93 -0.36 0.90 16 36 H 0.04 0.78 7.75 -51.93 -0.40 0.38 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 39 H 0.01 0.19 7.57 -51.93 -0.39 -0.21 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 342.02 15.07 5.15 5.15 Total: -1.00 -31.15 342.02 -7.62 -38.78 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -6.35 Total: -0.28 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -1.69 Total: -19.08 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.09 Total: -37.00 kcal Atomic # 8 Polarization: -2.96 SS G_CDS: -0.20 Total: -3.17 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.15 -7.62 -38.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602576610.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.937 kcal (2) G-P(sol) polarization free energy of solvation -31.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds