Wall clock time and date at job start Tue Mar 31 2020 05:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47276 * 2 1 4 4 C 1.53003 * 109.47178 * 120.00118 * 2 1 3 5 5 C 1.50694 * 109.47132 * 295.00139 * 4 2 1 6 6 H 1.08004 * 120.00209 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00163 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99993 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00398 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47378 * 59.99509 * 9 7 5 11 11 H 1.48500 * 109.47555 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47067 * 299.99790 * 9 7 5 13 13 C 1.53004 * 109.47534 * 240.00232 * 2 1 3 14 14 N 1.46503 * 109.46922 * 64.99849 * 13 2 1 15 15 C 1.39963 * 119.99960 * 180.02562 * 14 13 2 16 16 C 1.38728 * 120.09000 * 359.97438 * 15 14 13 17 17 C 1.38221 * 119.98329 * 180.02562 * 16 15 14 18 18 C 1.38262 * 120.15675 * 0.02562 * 17 16 15 19 19 C 1.38285 * 120.17968 * 359.97438 * 18 17 16 20 20 C 1.38505 * 120.01992 * 0.02562 * 19 18 17 21 21 O 1.36006 * 120.07916 * 179.97438 * 20 19 18 22 22 C 1.42905 * 117.00040 * 359.97438 * 21 20 19 23 23 C 1.53002 * 109.46914 * 180.02562 * 22 21 20 24 24 F 1.39897 * 109.47379 * 64.99966 * 23 22 21 25 25 H 1.09004 * 109.46888 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47187 * 300.00268 * 1 2 3 27 27 H 1.09006 * 109.47049 * 60.00000 * 1 2 3 28 28 H 1.09003 * 109.46654 * 55.00359 * 4 2 1 29 29 H 1.08997 * 109.47082 * 175.00124 * 4 2 1 30 30 H 0.96998 * 120.00547 * 179.97438 * 8 7 5 31 31 H 1.08996 * 109.46771 * 305.00278 * 13 2 1 32 32 H 1.08996 * 109.47582 * 185.00227 * 13 2 1 33 33 H 0.96996 * 119.99907 * 0.02562 * 14 13 2 34 34 H 1.08003 * 120.00662 * 0.04141 * 16 15 14 35 35 H 1.07999 * 119.92430 * 180.02562 * 17 16 15 36 36 H 1.07997 * 119.90405 * 180.27532 * 18 17 16 37 37 H 1.08003 * 119.98639 * 180.02562 * 19 18 17 38 38 H 1.09004 * 109.46625 * 299.99948 * 22 21 20 39 39 H 1.08993 * 109.47155 * 60.00412 * 22 21 20 40 40 H 1.08998 * 109.46734 * 184.99956 * 23 22 21 41 41 H 1.09004 * 109.46797 * 304.99293 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0569 2.4766 6 1 1.0806 0.9745 2.3757 7 6 1.9932 -0.4018 3.7282 8 7 2.6764 -1.5188 3.8511 9 14 1.4984 0.5625 5.2496 10 1 0.0184 0.6680 5.3093 11 1 1.9935 -0.1375 6.4621 12 1 2.0895 1.9233 5.1871 13 6 2.0401 -0.7212 -1.2493 14 7 1.6525 0.0355 -2.4424 15 6 2.0089 -0.4307 -3.7131 16 6 2.7296 -1.6087 -3.8449 17 6 3.0808 -2.0667 -5.1008 18 6 2.7161 -1.3532 -6.2275 19 6 1.9976 -0.1781 -6.1038 20 6 1.6418 0.2877 -4.8489 21 8 0.9356 1.4435 -4.7258 22 6 0.5944 2.1271 -5.9335 23 6 -0.1919 3.3957 -5.5967 24 9 0.6302 4.2802 -4.8903 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.6054 -1.7199 1.2950 29 1 3.1263 -0.7995 1.2056 30 1 2.9243 -1.8414 4.7316 31 1 1.6054 -1.7197 -1.2952 32 1 3.1264 -0.7995 -1.2056 33 1 1.1489 0.8595 -2.3517 34 1 3.0159 -2.1679 -2.9664 35 1 3.6416 -2.9842 -5.2023 36 1 2.9888 -1.7171 -7.2070 37 1 1.7140 0.3766 -6.9860 38 1 1.5053 2.3959 -6.4685 39 1 -0.0160 1.4763 -6.5593 40 1 -0.5284 3.8700 -6.5186 41 1 -1.0561 3.1359 -4.9853 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602674281.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:06 Heat of formation + Delta-G solvation = -82.183433 kcal Electronic energy + Delta-G solvation = -21535.316430 eV Core-core repulsion = 18136.051085 eV Total energy + Delta-G solvation = -3399.265345 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -47.82576 -40.17952 -37.72879 -36.46287 -33.93838 -32.09963 -31.25493 -29.79418 -28.59828 -26.80997 -25.71678 -24.05419 -22.84135 -22.00612 -21.00637 -19.33827 -18.29100 -16.94931 -16.84068 -16.49544 -15.98199 -15.74152 -15.13491 -15.11752 -14.60577 -14.53482 -14.40633 -14.05263 -13.57572 -13.05601 -12.91645 -12.61800 -12.36607 -11.98560 -11.69260 -11.52560 -11.51052 -11.28608 -11.09294 -10.90943 -10.88109 -10.84907 -10.39733 -10.31719 -10.00973 -9.63780 -9.27299 -9.03918 -8.47205 -8.35160 -6.96133 -5.99956 -4.01661 1.48395 1.70656 2.98260 3.33673 3.38189 3.40531 3.79987 3.95064 4.22323 4.43332 4.46582 4.61868 4.74570 4.91413 4.97565 5.11693 5.31047 5.35904 5.46288 5.50185 5.64242 5.69012 5.73561 5.87177 5.98195 6.22803 6.23873 6.39567 6.43894 6.47388 6.69280 6.84034 6.88621 7.03837 7.06583 7.22201 7.64001 7.69654 7.78317 7.98853 8.08818 8.41759 9.03802 9.61967 11.11481 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.017785 B = 0.003627 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.989285 B = 7718.567908 C = 9067.712728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.096 4.096 3 H 0.062 0.938 4 C 0.031 3.969 5 C -0.516 4.516 6 H 0.056 0.944 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.127 3.873 14 N -0.735 5.735 15 C 0.209 3.791 16 C -0.174 4.174 17 C -0.100 4.100 18 C -0.156 4.156 19 C -0.162 4.162 20 C 0.042 3.958 21 O -0.314 6.314 22 C 0.030 3.970 23 C 0.067 3.933 24 F -0.210 7.210 25 H 0.046 0.954 26 H 0.063 0.937 27 H 0.031 0.969 28 H 0.018 0.982 29 H 0.017 0.983 30 H 0.261 0.739 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.403 0.597 34 H 0.130 0.870 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.958 3.809 -22.723 23.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.115 4.115 3 H 0.080 0.920 4 C -0.007 4.007 5 C -0.555 4.555 6 H 0.074 0.926 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 C 0.003 3.997 14 N -0.364 5.364 15 C 0.104 3.896 16 C -0.197 4.197 17 C -0.119 4.119 18 C -0.177 4.177 19 C -0.182 4.182 20 C -0.006 4.006 21 O -0.229 6.229 22 C -0.046 4.046 23 C 0.012 3.988 24 F -0.191 7.191 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.050 0.950 28 H 0.037 0.963 29 H 0.035 0.965 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.238 0.762 34 H 0.148 0.852 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.138 0.862 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.875 3.691 -22.204 22.840 hybrid contribution -0.323 0.734 0.678 1.050 sum -4.198 4.425 -21.526 22.374 Atomic orbital electron populations 1.21713 0.95935 1.01009 1.00209 1.21436 0.95667 0.99862 0.94525 0.91955 1.19073 0.96243 0.95508 0.89837 1.21164 1.34998 1.08354 0.90939 0.92604 1.25003 0.95236 0.95074 0.99092 1.69946 1.38818 1.21150 1.23599 0.86677 0.78883 0.80126 0.82432 1.20279 1.21324 1.20268 1.21629 0.98996 0.95100 0.83944 1.44926 1.61223 1.28202 1.02015 1.17322 0.95376 0.92894 0.84044 1.20588 1.04029 0.96605 0.98489 1.20807 0.99732 0.99537 0.91856 1.20585 1.02613 0.96156 0.98339 1.20886 1.03312 0.98985 0.94986 1.18383 1.00599 0.88555 0.93027 1.86003 1.70345 1.34747 1.31801 1.23336 1.00216 0.93555 0.87462 1.22044 0.92621 0.86780 0.97360 1.92819 1.74835 1.70325 1.81130 0.93532 0.91815 0.95036 0.96320 0.96453 0.92957 0.92660 0.92595 0.76150 0.85194 0.86247 0.86600 0.86163 0.91171 0.90599 0.88829 0.89620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 8.88 37.16 0.33 -2.14 16 2 C -0.10 -1.93 2.37 -90.62 -0.22 -2.15 16 3 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 4 C 0.03 0.78 4.45 -27.88 -0.12 0.65 16 5 C -0.52 -14.31 8.41 -34.44 -0.29 -14.60 16 6 H 0.06 1.51 7.06 -52.48 -0.37 1.14 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 9 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.13 2.21 4.31 -4.04 -0.02 2.19 16 14 N -0.74 -11.80 5.46 -58.49 -0.32 -12.12 16 15 C 0.21 3.19 6.67 -83.56 -0.56 2.63 16 16 C -0.17 -2.45 9.31 -39.41 -0.37 -2.82 16 17 C -0.10 -1.22 10.04 -39.58 -0.40 -1.61 16 18 C -0.16 -1.77 10.04 -39.56 -0.40 -2.16 16 19 C -0.16 -1.89 9.04 -39.47 -0.36 -2.25 16 20 C 0.04 0.58 6.70 -39.08 -0.26 0.32 16 21 O -0.31 -4.12 9.38 -19.76 -0.19 -4.30 16 22 C 0.03 0.26 5.20 37.16 0.19 0.46 16 23 C 0.07 0.51 7.92 37.16 0.29 0.80 16 24 F -0.21 -2.49 17.35 2.25 0.04 -2.45 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 27 H 0.03 0.51 7.18 -51.93 -0.37 0.14 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.06 0.95 7.95 -51.93 -0.41 0.54 16 32 H 0.06 0.99 7.95 -51.93 -0.41 0.58 16 33 H 0.40 6.47 7.02 -40.82 -0.29 6.18 16 34 H 0.13 1.80 6.74 -52.48 -0.35 1.45 16 35 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 36 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.12 1.07 6.30 -52.48 -0.33 0.74 16 38 H 0.07 0.57 7.67 -51.93 -0.40 0.17 16 39 H 0.08 0.49 7.66 -51.93 -0.40 0.10 16 40 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 340.88 15.07 5.14 5.14 Total: -1.00 -31.22 340.88 -8.09 -39.31 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.21 Total: 2.95 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -2.26 Total: -19.14 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.42 Total: -38.10 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: -0.19 Total: -4.30 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.04 Total: -2.45 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.22 -8.09 -39.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602674281.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.877 kcal (2) G-P(sol) polarization free energy of solvation -31.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds