Wall clock time and date at job start Tue Mar 31 2020 05:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47276 * 2 1 4 4 C 1.53003 * 109.47178 * 120.00118 * 2 1 3 5 5 C 1.50694 * 109.47132 * 295.00139 * 4 2 1 6 6 H 1.08004 * 120.00209 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00163 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99993 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00398 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47378 * 59.99509 * 9 7 5 11 11 H 1.48500 * 109.47555 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47067 * 299.99790 * 9 7 5 13 13 C 1.53004 * 109.47534 * 240.00232 * 2 1 3 14 14 N 1.46503 * 109.46922 * 64.99849 * 13 2 1 15 15 C 1.39963 * 119.99960 * 180.02562 * 14 13 2 16 16 C 1.38728 * 120.09000 * 359.97438 * 15 14 13 17 17 C 1.38221 * 119.98329 * 180.02562 * 16 15 14 18 18 C 1.38262 * 120.15675 * 0.02562 * 17 16 15 19 19 C 1.38285 * 120.17968 * 359.97438 * 18 17 16 20 20 C 1.38505 * 120.01992 * 0.02562 * 19 18 17 21 21 O 1.36006 * 120.07916 * 179.97438 * 20 19 18 22 22 C 1.42905 * 117.00040 * 359.97438 * 21 20 19 23 23 C 1.53002 * 109.46914 * 180.02562 * 22 21 20 24 24 F 1.39897 * 109.47379 * 64.99966 * 23 22 21 25 25 H 1.09004 * 109.46888 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47187 * 300.00268 * 1 2 3 27 27 H 1.09006 * 109.47049 * 60.00000 * 1 2 3 28 28 H 1.09003 * 109.46654 * 55.00359 * 4 2 1 29 29 H 1.08997 * 109.47082 * 175.00124 * 4 2 1 30 30 H 0.96998 * 120.00547 * 179.97438 * 8 7 5 31 31 H 1.08996 * 109.46771 * 305.00278 * 13 2 1 32 32 H 1.08996 * 109.47582 * 185.00227 * 13 2 1 33 33 H 0.96996 * 119.99907 * 0.02562 * 14 13 2 34 34 H 1.08003 * 120.00662 * 0.04141 * 16 15 14 35 35 H 1.07999 * 119.92430 * 180.02562 * 17 16 15 36 36 H 1.07997 * 119.90405 * 180.27532 * 18 17 16 37 37 H 1.08003 * 119.98639 * 180.02562 * 19 18 17 38 38 H 1.09004 * 109.46625 * 299.99948 * 22 21 20 39 39 H 1.08993 * 109.47155 * 60.00412 * 22 21 20 40 40 H 1.08998 * 109.46734 * 184.99956 * 23 22 21 41 41 H 1.09004 * 109.46797 * 304.99293 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0569 2.4766 6 1 1.0806 0.9745 2.3757 7 6 1.9932 -0.4018 3.7282 8 7 2.6764 -1.5188 3.8511 9 14 1.4984 0.5625 5.2496 10 1 0.0184 0.6680 5.3093 11 1 1.9935 -0.1375 6.4621 12 1 2.0895 1.9233 5.1871 13 6 2.0401 -0.7212 -1.2493 14 7 1.6525 0.0355 -2.4424 15 6 2.0089 -0.4307 -3.7131 16 6 2.7296 -1.6087 -3.8449 17 6 3.0808 -2.0667 -5.1008 18 6 2.7161 -1.3532 -6.2275 19 6 1.9976 -0.1781 -6.1038 20 6 1.6418 0.2877 -4.8489 21 8 0.9356 1.4435 -4.7258 22 6 0.5944 2.1271 -5.9335 23 6 -0.1919 3.3957 -5.5967 24 9 0.6302 4.2802 -4.8903 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.6054 -1.7199 1.2950 29 1 3.1263 -0.7995 1.2056 30 1 2.9243 -1.8414 4.7316 31 1 1.6054 -1.7197 -1.2952 32 1 3.1264 -0.7995 -1.2056 33 1 1.1489 0.8595 -2.3517 34 1 3.0159 -2.1679 -2.9664 35 1 3.6416 -2.9842 -5.2023 36 1 2.9888 -1.7171 -7.2070 37 1 1.7140 0.3766 -6.9860 38 1 1.5053 2.3959 -6.4685 39 1 -0.0160 1.4763 -6.5593 40 1 -0.5284 3.8700 -6.5186 41 1 -1.0561 3.1359 -4.9853 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602674281.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:06 Heat of formation + Delta-G solvation = -99.942319 kcal Electronic energy + Delta-G solvation = -21536.086513 eV Core-core repulsion = 18136.051085 eV Total energy + Delta-G solvation = -3400.035428 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.57796 -41.13017 -38.81107 -37.79687 -35.52758 -33.94816 -32.01779 -30.77248 -29.82826 -28.61928 -27.13231 -25.15902 -24.35616 -22.94101 -22.09420 -20.89754 -19.26013 -18.54965 -17.92714 -17.56554 -17.05921 -16.54682 -16.45595 -16.20818 -16.04478 -15.76922 -15.43953 -15.19254 -14.78854 -14.44775 -14.17860 -14.08767 -13.78210 -13.37993 -13.34599 -12.79552 -12.69549 -12.52118 -12.29415 -12.23412 -12.16000 -11.98538 -11.87088 -11.70985 -11.64843 -11.17769 -11.05022 -10.90092 -10.53863 -9.42868 -8.18263 -8.06940 -6.27556 0.51768 0.72315 1.40324 1.42731 1.50433 2.18589 2.40886 2.62009 2.97562 3.15459 3.59724 3.87944 3.99095 4.05480 4.06909 4.16156 4.21215 4.25493 4.31933 4.38393 4.54224 4.59258 4.69968 4.75538 4.80894 4.88371 4.91568 4.96161 5.19045 5.28083 5.28911 5.41584 5.49666 5.50680 5.74072 5.74712 5.85077 5.93985 6.15577 6.28369 6.62457 6.86468 6.91099 7.40670 8.93642 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.017785 B = 0.003627 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.989285 B = 7718.567908 C = 9067.712728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.086 4.086 3 H 0.057 0.943 4 C 0.036 3.964 5 C -0.532 4.532 6 H 0.061 0.939 7 C 0.000 4.000 8 N -0.933 5.933 9 Si 0.960 3.040 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.145 3.855 14 N -0.740 5.740 15 C 0.176 3.824 16 C -0.188 4.188 17 C -0.108 4.108 18 C -0.148 4.148 19 C -0.162 4.162 20 C 0.035 3.965 21 O -0.337 6.337 22 C 0.021 3.979 23 C 0.060 3.940 24 F -0.237 7.237 25 H 0.043 0.957 26 H 0.049 0.951 27 H 0.057 0.943 28 H -0.004 1.004 29 H -0.009 1.009 30 H 0.263 0.737 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.401 0.599 34 H 0.121 0.879 35 H 0.141 0.859 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.076 0.924 39 H 0.103 0.897 40 H 0.134 0.866 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.886 4.663 -24.952 25.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.104 4.104 3 H 0.075 0.925 4 C -0.001 4.001 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.197 4.197 8 N -0.574 5.574 9 Si 0.785 3.215 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.194 1.194 13 C 0.021 3.979 14 N -0.370 5.370 15 C 0.073 3.927 16 C -0.212 4.212 17 C -0.127 4.127 18 C -0.168 4.168 19 C -0.181 4.181 20 C -0.013 4.013 21 O -0.253 6.253 22 C -0.054 4.054 23 C 0.006 3.994 24 F -0.219 7.219 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.015 0.985 29 H 0.009 0.991 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.237 0.763 34 H 0.139 0.861 35 H 0.159 0.841 36 H 0.165 0.835 37 H 0.169 0.831 38 H 0.094 0.906 39 H 0.121 0.879 40 H 0.152 0.848 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.807 4.552 -24.478 25.358 hybrid contribution -0.021 0.449 1.213 1.294 sum -4.828 5.001 -23.265 24.281 Atomic orbital electron populations 1.21603 0.94557 1.01036 1.00751 1.21204 0.96698 0.98986 0.93556 0.92483 1.18938 0.94467 0.94784 0.91929 1.21579 1.34786 1.08654 0.92032 0.92109 1.25915 0.95180 0.96061 1.02555 1.70082 1.40049 1.22836 1.24425 0.85574 0.78949 0.78736 0.78241 1.19191 1.20950 1.19414 1.21223 0.98208 0.94774 0.83724 1.44653 1.62252 1.28192 1.01924 1.17598 0.97068 0.94046 0.84032 1.20724 1.04471 0.96638 0.99348 1.21114 0.99755 1.00478 0.91322 1.21026 1.00950 0.95455 0.99391 1.21275 1.02518 0.99167 0.95155 1.18560 1.00596 0.88818 0.93280 1.85984 1.70249 1.34628 1.34417 1.23674 1.01141 0.94043 0.86521 1.22404 0.91966 0.86159 0.98920 1.92762 1.75769 1.71325 1.82031 0.93743 0.93234 0.92385 0.98540 0.99083 0.92858 0.92850 0.93573 0.76334 0.86103 0.84138 0.83450 0.83102 0.90568 0.87944 0.84786 0.89273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.61 8.88 71.98 0.64 -3.97 16 2 C -0.09 -3.54 2.37 -10.79 -0.03 -3.57 16 3 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 4 C 0.04 1.91 4.45 29.85 0.13 2.05 16 5 C -0.53 -30.14 8.41 25.60 0.22 -29.92 16 6 H 0.06 3.31 7.06 -2.91 -0.02 3.29 16 7 C 0.00 0.03 5.46 84.65 0.46 0.49 16 8 N -0.93 -57.04 13.29 21.44 0.28 -56.75 16 9 Si 0.96 44.61 29.54 68.60 2.03 46.63 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 13 C 0.15 5.25 4.31 86.38 0.37 5.62 16 14 N -0.74 -24.14 5.46 -338.97 -1.85 -25.99 16 15 C 0.18 5.35 6.67 38.22 0.25 5.60 16 16 C -0.19 -5.32 9.31 22.38 0.21 -5.11 16 17 C -0.11 -2.43 10.04 22.27 0.22 -2.20 16 18 C -0.15 -2.87 10.04 22.29 0.22 -2.65 16 19 C -0.16 -3.30 9.04 22.34 0.20 -3.09 16 20 C 0.04 0.93 6.70 22.59 0.15 1.08 16 21 O -0.34 -8.41 9.38 -93.62 -0.88 -9.29 16 22 C 0.02 0.32 5.20 71.98 0.37 0.69 16 23 C 0.06 0.77 7.92 71.98 0.57 1.34 16 24 F -0.24 -5.40 17.35 44.97 0.78 -4.62 16 25 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 26 H 0.05 1.99 6.95 -2.39 -0.02 1.97 16 27 H 0.06 1.87 7.18 -2.38 -0.02 1.85 16 28 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 29 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 30 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 31 H 0.05 1.92 7.95 -2.39 -0.02 1.91 16 32 H 0.05 1.73 7.95 -2.39 -0.02 1.71 16 33 H 0.40 13.01 7.02 -92.71 -0.65 12.36 16 34 H 0.12 3.50 6.74 -2.91 -0.02 3.48 16 35 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 36 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 37 H 0.15 2.05 6.30 -2.91 -0.02 2.04 16 38 H 0.08 1.03 7.67 -2.38 -0.02 1.01 16 39 H 0.10 0.96 7.66 -2.39 -0.02 0.94 16 40 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 Total: -1.00 -69.01 340.88 4.74 -64.27 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.37 Total: 19.39 kcal Atomic # 6 Polarization: -37.65 SS G_CDS: 4.00 Total: -33.64 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -1.57 Total: -82.74 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -0.88 Total: -9.29 kcal Atomic # 9 Polarization: -5.40 SS G_CDS: 0.78 Total: -4.62 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -69.01 4.74 -64.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602674281.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.673 kcal (2) G-P(sol) polarization free energy of solvation -69.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds