Wall clock time and date at job start Tue Mar 31 2020 05:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35950 * 116.99762 * 2 1 4 4 C 1.38728 * 120.02780 * 0.02562 * 3 2 1 5 5 C 1.38135 * 119.96874 * 179.97438 * 4 3 2 6 6 C 1.38478 * 120.02713 * 0.02562 * 5 4 3 7 7 F 1.35101 * 119.96710 * 179.97438 * 6 5 4 8 8 C 1.38433 * 120.06005 * 359.97438 * 6 5 4 9 9 C 1.50702 * 119.98195 * 179.97438 * 8 6 5 10 10 N 1.46894 * 109.47376 * 285.00433 * 9 8 6 11 11 C 1.46904 * 111.00353 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47486 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.46716 * 55.00522 * 12 11 10 14 14 C 1.52997 * 109.47317 * 295.00613 * 12 11 10 15 15 C 1.52992 * 109.46961 * 175.00152 * 12 11 10 16 16 C 1.50707 * 109.46966 * 185.00310 * 15 12 11 17 17 H 1.07991 * 119.99895 * 0.02562 * 16 15 12 18 18 C 1.37883 * 119.99853 * 180.02562 * 16 15 12 19 19 N 1.31509 * 120.00109 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99772 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47379 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47607 * 119.99679 * 20 18 16 23 23 H 1.48498 * 109.46831 * 239.99884 * 20 18 16 24 24 C 1.38164 * 120.03542 * 0.26299 * 8 6 5 25 25 H 1.09001 * 109.47200 * 299.99626 * 1 2 3 26 26 H 1.08998 * 109.47506 * 60.00231 * 1 2 3 27 27 H 1.09006 * 109.47189 * 180.02562 * 1 2 3 28 28 H 1.07994 * 120.01699 * 359.97438 * 4 3 2 29 29 H 1.07993 * 119.98549 * 179.97438 * 5 4 3 30 30 H 1.09002 * 109.47370 * 165.00170 * 9 8 6 31 31 H 1.09005 * 109.46750 * 45.00403 * 9 8 6 32 32 H 1.00906 * 111.00349 * 56.04575 * 10 9 8 33 33 H 1.09006 * 109.46627 * 59.99640 * 11 10 9 34 34 H 1.08997 * 109.47323 * 300.00771 * 11 10 9 35 35 H 1.09002 * 109.47153 * 299.99641 * 14 12 11 36 36 H 1.09001 * 109.46832 * 179.97438 * 14 12 11 37 37 H 1.09004 * 109.47261 * 59.99813 * 14 12 11 38 38 H 1.08996 * 109.47729 * 305.00119 * 15 12 11 39 39 H 1.09001 * 109.47563 * 65.00698 * 15 12 11 40 40 H 0.97004 * 120.00063 * 180.02562 * 19 18 16 41 41 H 1.07997 * 120.01779 * 179.71921 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2911 2.3752 0.0005 5 6 1.9194 3.6053 0.0011 6 6 3.3023 3.6771 0.0005 7 9 3.9156 4.8809 0.0005 8 6 4.0569 2.5165 0.0000 9 6 5.5618 2.5966 -0.0012 10 7 6.0307 2.9807 -1.3392 11 6 7.4965 3.0695 -1.3781 12 6 7.9462 3.4702 -2.7846 13 1 7.4469 4.3942 -3.0761 14 6 7.5816 2.3600 -3.7722 15 6 9.4610 3.6840 -2.7941 16 6 9.8875 4.1969 -4.1455 17 1 9.1516 4.3548 -4.9199 18 6 11.2173 4.4643 -4.3932 19 7 12.1134 4.2724 -3.4500 20 14 11.7457 5.1006 -6.0680 21 1 10.5554 5.2304 -6.9464 22 1 12.3930 6.4279 -5.9117 23 1 12.7088 4.1489 -6.6777 24 6 3.4311 1.2847 -0.0055 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.2126 2.3194 0.0005 29 1 1.3319 4.5115 0.0011 30 1 5.9777 1.6247 0.2645 31 1 5.8865 3.3416 0.7253 32 1 5.6083 3.8479 -1.6354 33 1 7.9261 2.1010 -1.1218 34 1 7.8344 3.8178 -0.6612 35 1 8.0808 1.4359 -3.4807 36 1 7.9015 2.6457 -4.7743 37 1 6.5022 2.2077 -3.7654 38 1 9.7302 4.4112 -2.0281 39 1 9.9629 2.7383 -2.5895 40 1 13.0488 4.4610 -3.6241 41 1 4.0200 0.3795 -0.0105 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602714400.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:21 Heat of formation + Delta-G solvation = -76.319412 kcal Electronic energy + Delta-G solvation = -21276.156321 eV Core-core repulsion = 17877.145259 eV Total energy + Delta-G solvation = -3399.011062 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.92980 -40.36662 -37.94537 -36.61759 -34.18883 -32.28956 -31.15644 -29.98473 -27.59654 -26.92499 -26.03564 -24.19011 -23.05560 -22.20849 -21.33946 -19.12627 -18.04109 -17.53641 -17.15692 -16.31597 -16.14425 -15.60369 -15.39152 -14.85210 -14.70081 -14.57578 -14.09646 -14.01946 -13.64487 -13.09791 -13.00299 -12.76129 -12.62641 -12.21865 -12.09957 -11.85713 -11.48307 -11.33677 -11.14958 -10.98712 -10.83066 -10.71492 -10.25247 -10.19796 -9.66093 -9.35642 -9.06855 -8.90225 -8.33583 -8.29859 -8.10660 -5.94504 -3.95241 0.89373 1.00737 2.90997 3.29856 3.34557 3.41997 3.46466 4.12692 4.36610 4.41050 4.50696 4.65142 4.71122 4.77649 4.83096 5.03229 5.09055 5.11246 5.41401 5.44522 5.61091 5.69954 5.75164 5.84910 5.92031 5.94578 6.12464 6.19944 6.43515 6.45334 6.58618 6.73194 7.03472 7.04557 7.21952 7.22977 7.35491 7.62588 7.73823 7.89403 8.06114 8.50385 9.11368 9.67973 11.17135 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.031727 B = 0.002821 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.317621 B = 9923.000297 C =10182.729205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.314 6.314 3 C 0.117 3.883 4 C -0.185 4.185 5 C -0.113 4.113 6 C 0.066 3.934 7 F -0.138 7.138 8 C -0.066 4.066 9 C 0.095 3.905 10 N -0.681 5.681 11 C 0.063 3.937 12 C -0.082 4.082 13 H 0.053 0.947 14 C -0.123 4.123 15 C 0.027 3.973 16 C -0.511 4.511 17 H 0.057 0.943 18 C 0.054 3.946 19 N -0.897 5.897 20 Si 0.890 3.110 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.107 4.107 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.100 0.900 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.340 0.660 33 H 0.068 0.932 34 H 0.026 0.974 35 H 0.040 0.960 36 H 0.053 0.947 37 H 0.041 0.959 38 H 0.013 0.987 39 H 0.017 0.983 40 H 0.258 0.742 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.427 -6.108 9.914 27.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.228 6.228 3 C 0.072 3.928 4 C -0.204 4.204 5 C -0.132 4.132 6 C 0.046 3.954 7 F -0.117 7.117 8 C -0.067 4.067 9 C -0.034 4.034 10 N -0.312 5.312 11 C -0.065 4.065 12 C -0.101 4.101 13 H 0.072 0.928 14 C -0.180 4.180 15 C -0.011 4.011 16 C -0.549 4.549 17 H 0.075 0.925 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.718 3.282 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.126 4.126 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.119 0.881 28 H 0.153 0.847 29 H 0.155 0.845 30 H 0.105 0.895 31 H 0.062 0.938 32 H 0.157 0.843 33 H 0.087 0.913 34 H 0.045 0.955 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.031 0.969 39 H 0.035 0.965 40 H 0.068 0.932 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -24.134 -6.892 9.705 26.910 hybrid contribution 0.364 1.597 -0.380 1.681 sum -23.771 -5.295 9.325 26.078 Atomic orbital electron populations 1.23080 0.78313 1.04103 1.01370 1.86104 1.21407 1.26532 1.88734 1.18989 0.92242 0.84309 0.97302 1.21036 1.00244 0.91403 1.07753 1.20876 0.92570 0.98706 1.01075 1.17469 0.90668 0.80462 1.06797 1.91499 1.83273 1.42701 1.94182 1.19726 0.96470 0.91185 0.99325 1.20844 0.88613 1.02090 0.91848 1.60651 1.08571 1.38895 1.23055 1.22193 0.85155 1.00372 0.98776 1.21198 0.99574 0.97615 0.91729 0.92818 1.21589 0.99088 0.97784 0.99546 1.19130 0.88086 0.96867 0.96996 1.21282 0.92506 1.42884 0.98225 0.92508 1.25026 0.96920 0.95935 0.96756 1.69977 1.01561 1.49494 1.32696 0.86572 0.78607 0.78476 0.84573 1.19753 1.21137 1.21102 1.20177 0.91156 0.97783 1.03486 0.92634 0.92520 0.88122 0.84699 0.84531 0.89504 0.93834 0.84274 0.91323 0.95538 0.94124 0.92778 0.93954 0.96893 0.96502 0.93184 0.84003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -3.00 10.50 -19.58 -0.21 -3.20 16 3 C 0.12 1.20 6.69 -39.23 -0.26 0.94 16 4 C -0.19 -1.65 9.04 -39.44 -0.36 -2.00 16 5 C -0.11 -1.11 10.02 -39.53 -0.40 -1.51 16 6 C 0.07 0.79 7.10 -39.42 -0.28 0.51 16 7 F -0.14 -1.84 16.35 2.25 0.04 -1.81 16 8 C -0.07 -0.80 5.43 -104.58 -0.57 -1.36 16 9 C 0.09 1.24 5.50 -4.98 -0.03 1.21 16 10 N -0.68 -10.49 5.94 -115.05 -0.68 -11.18 16 11 C 0.06 1.12 5.07 -3.82 -0.02 1.11 16 12 C -0.08 -1.73 2.48 -90.63 -0.22 -1.95 16 13 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 14 C -0.12 -2.46 8.89 37.16 0.33 -2.13 16 15 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 16 C -0.51 -14.54 8.41 -34.43 -0.29 -14.83 16 17 H 0.06 1.58 7.06 -52.49 -0.37 1.21 16 18 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 20 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 C -0.11 -1.20 9.60 -39.44 -0.38 -1.58 16 25 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 26 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 27 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.14 0.82 6.30 -52.49 -0.33 0.49 16 29 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.09 1.05 7.95 -51.93 -0.41 0.63 16 31 H 0.04 0.57 8.08 -51.93 -0.42 0.15 16 32 H 0.34 5.29 8.19 -39.29 -0.32 4.97 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 1.15 6.95 -51.93 -0.36 0.79 16 37 H 0.04 0.77 7.75 -51.93 -0.40 0.36 16 38 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.14 1.47 8.00 -52.49 -0.42 1.05 16 LS Contribution 343.83 15.07 5.18 5.18 Total: -1.00 -31.46 343.83 -8.01 -39.47 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -6.35 Total: -0.46 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: -1.70 Total: -18.41 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.05 Total: -37.77 kcal Atomic # 8 Polarization: -3.00 SS G_CDS: -0.21 Total: -3.20 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.46 -8.01 -39.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602714400.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.846 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds