Wall clock time and date at job start Tue Mar 31 2020 05:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35941 * 117.00145 * 2 1 4 4 C 1.38732 * 120.03014 * 0.02562 * 3 2 1 5 5 C 1.38124 * 119.97229 * 179.97438 * 4 3 2 6 6 C 1.38477 * 120.02934 * 359.97438 * 5 4 3 7 7 F 1.35099 * 119.97413 * 179.97438 * 6 5 4 8 8 C 1.38441 * 120.06169 * 0.02562 * 6 5 4 9 9 C 1.50697 * 119.98629 * 179.97438 * 8 6 5 10 10 N 1.46907 * 109.46886 * 284.99994 * 9 8 6 11 11 C 1.46899 * 110.99495 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.47039 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.46722 * 304.99519 * 12 11 10 14 14 C 1.53002 * 109.47082 * 64.99745 * 12 11 10 15 15 C 1.53002 * 109.47358 * 184.99616 * 12 11 10 16 16 C 1.50696 * 109.46919 * 174.99744 * 15 12 11 17 17 H 1.07999 * 120.00202 * 359.97438 * 16 15 12 18 18 C 1.37884 * 119.99746 * 180.02562 * 16 15 12 19 19 N 1.31514 * 119.99573 * 0.27650 * 18 16 15 20 20 Si 1.86800 * 119.99781 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46758 * 89.99934 * 20 18 16 22 22 H 1.48499 * 109.47026 * 209.99782 * 20 18 16 23 23 H 1.48496 * 109.47474 * 329.99818 * 20 18 16 24 24 C 1.38175 * 120.02556 * 0.25195 * 8 6 5 25 25 H 1.08997 * 109.46818 * 59.99915 * 1 2 3 26 26 H 1.08998 * 109.46991 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46817 * 299.99744 * 1 2 3 28 28 H 1.08000 * 120.00961 * 359.97438 * 4 3 2 29 29 H 1.07999 * 119.98897 * 179.97438 * 5 4 3 30 30 H 1.09003 * 109.47189 * 164.99802 * 9 8 6 31 31 H 1.09000 * 109.47286 * 44.99543 * 9 8 6 32 32 H 1.00900 * 110.99714 * 303.95106 * 10 9 8 33 33 H 1.08995 * 109.48028 * 59.99869 * 11 10 9 34 34 H 1.09001 * 109.47280 * 299.99463 * 11 10 9 35 35 H 1.09000 * 109.47048 * 180.02562 * 14 12 11 36 36 H 1.09001 * 109.46743 * 300.00081 * 14 12 11 37 37 H 1.08994 * 109.47199 * 60.00238 * 14 12 11 38 38 H 1.09000 * 109.46497 * 55.00010 * 15 12 11 39 39 H 1.08999 * 109.46623 * 295.00074 * 15 12 11 40 40 H 0.97001 * 120.00651 * 359.71956 * 19 18 16 41 41 H 1.07999 * 120.01175 * 179.72203 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2912 2.3752 0.0005 5 6 1.9196 3.6052 0.0011 6 6 3.3025 3.6769 0.0016 7 9 3.9159 4.8806 0.0016 8 6 4.0571 2.5163 0.0011 9 6 5.5620 2.5964 0.0011 10 7 6.0319 2.9809 -1.3366 11 6 7.4977 3.0685 -1.3746 12 6 7.9484 3.4710 -2.7803 13 1 7.5358 2.7723 -3.5080 14 6 7.4503 4.8840 -3.0904 15 6 9.4763 3.4412 -2.8541 16 6 9.9163 3.7175 -4.2687 17 1 9.1798 3.8959 -5.0382 18 6 11.2591 3.7413 -4.5808 19 7 12.1557 3.5176 -3.6450 20 14 11.8045 4.0830 -6.3345 21 1 11.9896 5.5447 -6.5193 22 1 13.0878 3.3841 -6.5988 23 1 10.7696 3.5917 -7.2794 24 6 3.4311 1.2845 -0.0053 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 0.2127 2.3194 0.0005 29 1 1.3322 4.5114 0.0011 30 1 5.9776 1.6243 0.2666 31 1 5.8862 3.3410 0.7280 32 1 5.6899 2.3410 -2.0378 33 1 7.9265 2.0996 -1.1188 34 1 7.8358 3.8162 -0.6571 35 1 7.7709 5.1706 -4.0920 36 1 6.3617 4.9052 -3.0378 37 1 7.8629 5.5827 -2.3627 38 1 9.8358 2.4591 -2.5470 39 1 9.8870 4.2023 -2.1906 40 1 11.8725 3.3398 -2.7345 41 1 4.0200 0.3793 -0.0102 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602714401.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:23 Heat of formation + Delta-G solvation = -79.216137 kcal Electronic energy + Delta-G solvation = -21317.054756 eV Core-core repulsion = 17917.918083 eV Total energy + Delta-G solvation = -3399.136673 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.75593 -40.39506 -37.98697 -36.71378 -34.37137 -32.41395 -31.13350 -29.99642 -27.60551 -26.57092 -26.08370 -24.14364 -23.00495 -22.27962 -21.37145 -19.39146 -18.09451 -17.47285 -17.17842 -16.66878 -16.16267 -15.49124 -15.35667 -14.98752 -14.63193 -14.38330 -14.15343 -13.67951 -13.54750 -13.37333 -13.11606 -13.01405 -12.66214 -12.30345 -12.02594 -11.76772 -11.60320 -11.30334 -11.16287 -11.04182 -10.91897 -10.65679 -10.20277 -10.06641 -9.77474 -9.47415 -9.26318 -8.43702 -8.29585 -8.25818 -8.19390 -6.28881 -3.96601 0.85204 1.01242 2.87992 3.27623 3.47528 3.51137 3.66727 4.17316 4.32672 4.40005 4.56945 4.62847 4.66297 4.74819 4.75855 5.03249 5.07843 5.16414 5.37457 5.47491 5.52604 5.61879 5.72378 5.80365 5.84582 5.92024 6.08405 6.08936 6.35732 6.44680 6.48471 6.64346 6.92861 7.01297 7.10727 7.16317 7.25747 7.45241 7.56354 7.65129 8.31273 8.54864 8.96665 9.74726 11.11672 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.029768 B = 0.002847 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.375143 B = 9832.311359 C =10136.406927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.113 3.887 4 C -0.182 4.182 5 C -0.119 4.119 6 C 0.091 3.909 7 F -0.128 7.128 8 C -0.076 4.076 9 C 0.098 3.902 10 N -0.679 5.679 11 C 0.064 3.936 12 C -0.075 4.075 13 H 0.055 0.945 14 C -0.122 4.122 15 C 0.014 3.986 16 C -0.592 4.592 17 H 0.050 0.950 18 C 0.012 3.988 19 N -0.917 5.917 20 Si 1.070 2.930 21 H -0.288 1.288 22 H -0.285 1.285 23 H -0.289 1.289 24 C -0.118 4.118 25 H 0.056 0.944 26 H 0.100 0.900 27 H 0.055 0.945 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.043 0.957 31 H 0.085 0.915 32 H 0.339 0.661 33 H 0.025 0.975 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.043 0.957 37 H 0.039 0.961 38 H 0.003 0.997 39 H 0.007 0.993 40 H 0.268 0.732 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.033 -4.795 9.971 27.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.068 3.932 4 C -0.201 4.201 5 C -0.138 4.138 6 C 0.070 3.930 7 F -0.107 7.107 8 C -0.078 4.078 9 C -0.031 4.031 10 N -0.310 5.310 11 C -0.065 4.065 12 C -0.094 4.094 13 H 0.073 0.927 14 C -0.179 4.179 15 C -0.024 4.024 16 C -0.631 4.631 17 H 0.068 0.932 18 C -0.191 4.191 19 N -0.554 5.554 20 Si 0.899 3.101 21 H -0.215 1.215 22 H -0.211 1.211 23 H -0.215 1.215 24 C -0.137 4.137 25 H 0.075 0.925 26 H 0.119 0.881 27 H 0.074 0.926 28 H 0.153 0.847 29 H 0.155 0.845 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.157 0.843 33 H 0.043 0.957 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.021 0.979 39 H 0.025 0.975 40 H 0.078 0.922 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -23.662 -4.112 9.113 25.687 hybrid contribution -1.342 -0.749 1.042 1.857 sum -25.004 -4.861 10.155 27.422 Atomic orbital electron populations 1.23078 0.78285 1.04092 1.01392 1.86093 1.21433 1.26555 1.88838 1.18929 0.92149 0.84335 0.97798 1.21044 1.00236 0.91404 1.07380 1.20933 0.92749 0.98696 1.01450 1.17371 0.90216 0.80777 1.04586 1.91534 1.83230 1.42172 1.93738 1.19745 0.96484 0.91209 1.00342 1.20811 0.88582 1.00223 0.93513 1.60551 1.11556 1.55184 1.03728 1.22186 0.85098 0.99245 0.99927 1.21058 0.98413 0.97065 0.92832 0.92690 1.21574 0.98978 0.96106 1.01260 1.19254 0.89669 0.95715 0.97722 1.22062 0.94234 1.52369 0.94422 0.93171 1.25827 0.93241 0.94476 1.05600 1.70746 1.36392 1.45159 1.03101 0.83531 0.75610 0.76607 0.74384 1.21517 1.21109 1.21534 1.20209 0.91400 0.97657 1.04457 0.92520 0.88135 0.92613 0.84708 0.84485 0.93892 0.89699 0.84289 0.95684 0.91419 0.92689 0.93748 0.94227 0.97866 0.97459 0.92164 0.84371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.97 10.50 -19.55 -0.21 -3.17 16 3 C 0.11 1.15 6.69 -39.23 -0.26 0.88 16 4 C -0.18 -1.61 9.04 -39.44 -0.36 -1.96 16 5 C -0.12 -1.19 10.02 -39.54 -0.40 -1.58 16 6 C 0.09 1.12 7.24 -39.42 -0.29 0.84 16 7 F -0.13 -1.84 16.75 2.25 0.04 -1.81 16 8 C -0.08 -0.92 5.40 -104.57 -0.56 -1.48 16 9 C 0.10 1.26 5.49 -4.97 -0.03 1.23 16 10 N -0.68 -10.30 5.94 -115.05 -0.68 -10.98 16 11 C 0.06 1.12 5.07 -3.82 -0.02 1.10 16 12 C -0.07 -1.58 2.48 -90.62 -0.22 -1.80 16 13 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 14 C -0.12 -2.50 8.89 37.16 0.33 -2.17 16 15 C 0.01 0.36 3.76 -27.88 -0.10 0.26 16 16 C -0.59 -17.08 8.41 -34.44 -0.29 -17.37 16 17 H 0.05 1.43 7.06 -52.49 -0.37 1.06 16 18 C 0.01 0.34 5.46 -17.82 -0.10 0.25 16 19 N -0.92 -28.67 13.65 55.43 0.76 -27.92 16 20 Si 1.07 25.92 29.90 -169.99 -5.08 20.84 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 C -0.12 -1.28 9.60 -39.44 -0.38 -1.66 16 25 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 26 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 28 H 0.14 0.82 6.30 -52.49 -0.33 0.49 16 29 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 30 H 0.04 0.51 7.95 -51.93 -0.41 0.09 16 31 H 0.08 1.12 8.08 -51.93 -0.42 0.70 16 32 H 0.34 4.95 8.72 -39.29 -0.34 4.61 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.05 1.20 6.95 -51.93 -0.36 0.84 16 36 H 0.04 0.83 7.75 -51.93 -0.40 0.43 16 37 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.00 0.08 8.00 -51.93 -0.42 -0.33 16 39 H 0.01 0.20 8.01 -51.93 -0.42 -0.22 16 40 H 0.27 8.35 7.22 -40.82 -0.29 8.05 16 41 H 0.14 1.36 8.00 -52.49 -0.42 0.94 16 LS Contribution 343.57 15.07 5.18 5.18 Total: -1.00 -32.39 343.57 -8.00 -40.39 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -6.31 Total: -0.18 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: -1.68 Total: -22.34 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.07 Total: -38.90 kcal Atomic # 8 Polarization: -2.97 SS G_CDS: -0.21 Total: -3.17 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 25.92 SS G_CDS: -5.08 Total: 20.84 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.39 -8.00 -40.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602714401.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.828 kcal (2) G-P(sol) polarization free energy of solvation -32.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds