Wall clock time and date at job start Tue Mar 31 2020 05:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35941 * 117.00145 * 2 1 4 4 C 1.38732 * 120.03014 * 0.02562 * 3 2 1 5 5 C 1.38124 * 119.97229 * 179.97438 * 4 3 2 6 6 C 1.38477 * 120.02934 * 359.97438 * 5 4 3 7 7 F 1.35099 * 119.97413 * 179.97438 * 6 5 4 8 8 C 1.38441 * 120.06169 * 0.02562 * 6 5 4 9 9 C 1.50697 * 119.98629 * 179.97438 * 8 6 5 10 10 N 1.46907 * 109.46886 * 284.99994 * 9 8 6 11 11 C 1.46899 * 110.99495 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.47039 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.46722 * 304.99519 * 12 11 10 14 14 C 1.53002 * 109.47082 * 64.99745 * 12 11 10 15 15 C 1.53002 * 109.47358 * 184.99616 * 12 11 10 16 16 C 1.50696 * 109.46919 * 174.99744 * 15 12 11 17 17 H 1.07999 * 120.00202 * 359.97438 * 16 15 12 18 18 C 1.37884 * 119.99746 * 180.02562 * 16 15 12 19 19 N 1.31514 * 119.99573 * 0.27650 * 18 16 15 20 20 Si 1.86800 * 119.99781 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46758 * 89.99934 * 20 18 16 22 22 H 1.48499 * 109.47026 * 209.99782 * 20 18 16 23 23 H 1.48496 * 109.47474 * 329.99818 * 20 18 16 24 24 C 1.38175 * 120.02556 * 0.25195 * 8 6 5 25 25 H 1.08997 * 109.46818 * 59.99915 * 1 2 3 26 26 H 1.08998 * 109.46991 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46817 * 299.99744 * 1 2 3 28 28 H 1.08000 * 120.00961 * 359.97438 * 4 3 2 29 29 H 1.07999 * 119.98897 * 179.97438 * 5 4 3 30 30 H 1.09003 * 109.47189 * 164.99802 * 9 8 6 31 31 H 1.09000 * 109.47286 * 44.99543 * 9 8 6 32 32 H 1.00900 * 110.99714 * 303.95106 * 10 9 8 33 33 H 1.08995 * 109.48028 * 59.99869 * 11 10 9 34 34 H 1.09001 * 109.47280 * 299.99463 * 11 10 9 35 35 H 1.09000 * 109.47048 * 180.02562 * 14 12 11 36 36 H 1.09001 * 109.46743 * 300.00081 * 14 12 11 37 37 H 1.08994 * 109.47199 * 60.00238 * 14 12 11 38 38 H 1.09000 * 109.46497 * 55.00010 * 15 12 11 39 39 H 1.08999 * 109.46623 * 295.00074 * 15 12 11 40 40 H 0.97001 * 120.00651 * 359.71956 * 19 18 16 41 41 H 1.07999 * 120.01175 * 179.72203 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2912 2.3752 0.0005 5 6 1.9196 3.6052 0.0011 6 6 3.3025 3.6769 0.0016 7 9 3.9159 4.8806 0.0016 8 6 4.0571 2.5163 0.0011 9 6 5.5620 2.5964 0.0011 10 7 6.0319 2.9809 -1.3366 11 6 7.4977 3.0685 -1.3746 12 6 7.9484 3.4710 -2.7803 13 1 7.5358 2.7723 -3.5080 14 6 7.4503 4.8840 -3.0904 15 6 9.4763 3.4412 -2.8541 16 6 9.9163 3.7175 -4.2687 17 1 9.1798 3.8959 -5.0382 18 6 11.2591 3.7413 -4.5808 19 7 12.1557 3.5176 -3.6450 20 14 11.8045 4.0830 -6.3345 21 1 11.9896 5.5447 -6.5193 22 1 13.0878 3.3841 -6.5988 23 1 10.7696 3.5917 -7.2794 24 6 3.4311 1.2845 -0.0053 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 0.2127 2.3194 0.0005 29 1 1.3322 4.5114 0.0011 30 1 5.9776 1.6243 0.2666 31 1 5.8862 3.3410 0.7280 32 1 5.6899 2.3410 -2.0378 33 1 7.9265 2.0996 -1.1188 34 1 7.8358 3.8162 -0.6571 35 1 7.7709 5.1706 -4.0920 36 1 6.3617 4.9052 -3.0378 37 1 7.8629 5.5827 -2.3627 38 1 9.8358 2.4591 -2.5470 39 1 9.8870 4.2023 -2.1906 40 1 11.8725 3.3398 -2.7345 41 1 4.0200 0.3793 -0.0102 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602714401.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:23 Heat of formation + Delta-G solvation = -99.074421 kcal Electronic energy + Delta-G solvation = -21317.915876 eV Core-core repulsion = 17917.918083 eV Total energy + Delta-G solvation = -3399.997793 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.72745 -41.11127 -38.95535 -38.03727 -35.97408 -34.18956 -32.22628 -30.84909 -28.53926 -28.12760 -27.39393 -25.71278 -24.12201 -23.76404 -22.23298 -21.07443 -18.87935 -18.85000 -18.29839 -18.00645 -16.85006 -16.52253 -16.37116 -16.14430 -15.85201 -15.62208 -15.54837 -15.17960 -15.02082 -14.48886 -14.28392 -13.76898 -13.73086 -13.62647 -13.29955 -13.16131 -12.99292 -12.84565 -12.60782 -12.50099 -11.99271 -11.93507 -11.80137 -11.72961 -11.59633 -11.34154 -10.58417 -10.52210 -10.10757 -9.43649 -9.08824 -8.65508 -6.34284 0.06389 0.20680 1.52250 1.61708 1.79150 2.28002 2.47392 2.57922 3.18702 3.25235 3.37167 3.62270 3.67425 3.95811 4.03737 4.15937 4.21294 4.30240 4.40619 4.41905 4.42883 4.53784 4.61913 4.75866 4.76524 4.79360 4.87072 4.89297 5.06748 5.09027 5.17676 5.23143 5.31391 5.34490 5.46266 5.63280 5.65338 5.90543 6.08228 6.22497 6.34877 6.37567 6.62501 7.46463 8.75318 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.029768 B = 0.002847 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.375143 B = 9832.311359 C =10136.406927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.332 6.332 3 C 0.112 3.888 4 C -0.172 4.172 5 C -0.115 4.115 6 C 0.062 3.938 7 F -0.146 7.146 8 C -0.085 4.085 9 C 0.100 3.900 10 N -0.680 5.680 11 C 0.078 3.922 12 C -0.067 4.067 13 H 0.053 0.947 14 C -0.112 4.112 15 C 0.016 3.984 16 C -0.604 4.604 17 H 0.052 0.948 18 C -0.044 4.044 19 N -0.942 5.942 20 Si 1.118 2.882 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.269 1.269 24 C -0.127 4.127 25 H 0.067 0.933 26 H 0.117 0.883 27 H 0.070 0.930 28 H 0.167 0.833 29 H 0.158 0.842 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.344 0.656 33 H 0.025 0.975 34 H 0.062 0.938 35 H 0.037 0.963 36 H 0.064 0.936 37 H 0.033 0.967 38 H -0.015 1.015 39 H -0.014 1.014 40 H 0.254 0.746 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.607 -5.155 9.429 29.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.246 6.246 3 C 0.066 3.934 4 C -0.191 4.191 5 C -0.134 4.134 6 C 0.042 3.958 7 F -0.125 7.125 8 C -0.086 4.086 9 C -0.028 4.028 10 N -0.311 5.311 11 C -0.051 4.051 12 C -0.086 4.086 13 H 0.072 0.928 14 C -0.169 4.169 15 C -0.021 4.021 16 C -0.642 4.642 17 H 0.070 0.930 18 C -0.240 4.240 19 N -0.580 5.580 20 Si 0.940 3.060 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.193 1.193 24 C -0.147 4.147 25 H 0.086 0.914 26 H 0.136 0.864 27 H 0.088 0.912 28 H 0.185 0.815 29 H 0.176 0.824 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.162 0.838 33 H 0.043 0.957 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.083 0.917 37 H 0.053 0.947 38 H 0.003 0.997 39 H 0.005 0.995 40 H 0.064 0.936 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -26.276 -4.480 8.590 28.005 hybrid contribution -0.680 -0.714 1.271 1.608 sum -26.955 -5.193 9.861 29.168 Atomic orbital electron populations 1.23408 0.76105 1.05775 1.02598 1.86083 1.23731 1.26220 1.88571 1.19060 0.92068 0.85197 0.97064 1.21376 1.01776 0.90357 1.05598 1.21197 0.91846 1.00082 1.00289 1.17703 0.91392 0.80195 1.06516 1.91482 1.83716 1.43183 1.94139 1.19614 0.95658 0.91750 1.01624 1.20777 0.89657 1.00496 0.91881 1.60455 1.09514 1.55869 1.05291 1.21867 0.86943 0.98971 0.97308 1.20892 0.94897 0.97688 0.95121 0.92805 1.21464 1.00142 0.95331 0.99960 1.19188 0.93154 0.93773 0.96015 1.22454 0.94517 1.51603 0.95656 0.93010 1.27416 0.93872 0.93659 1.09060 1.70885 1.36947 1.47268 1.02944 0.82919 0.75783 0.77385 0.69926 1.19898 1.20896 1.19342 1.20292 0.92260 0.97347 1.04753 0.91415 0.86445 0.91181 0.81533 0.82445 0.92726 0.90391 0.83772 0.95680 0.91935 0.94358 0.91683 0.94748 0.99704 0.99534 0.93640 0.83889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 113.37 1.11 1.23 16 2 O -0.33 -5.47 10.50 -92.88 -0.98 -6.44 16 3 C 0.11 2.03 6.69 22.49 0.15 2.18 16 4 C -0.17 -2.55 9.04 22.36 0.20 -2.34 16 5 C -0.12 -2.05 10.02 22.30 0.22 -1.82 16 6 C 0.06 1.47 7.24 22.38 0.16 1.64 16 7 F -0.15 -4.18 16.75 44.97 0.75 -3.43 16 8 C -0.09 -1.98 5.40 -19.83 -0.11 -2.09 16 9 C 0.10 2.55 5.49 85.55 0.47 3.02 16 10 N -0.68 -20.25 5.94 -517.92 -3.08 -23.33 16 11 C 0.08 2.76 5.07 86.30 0.44 3.20 16 12 C -0.07 -2.84 2.48 -10.79 -0.03 -2.87 16 13 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 14 C -0.11 -4.55 8.89 71.98 0.64 -3.91 16 15 C 0.02 0.87 3.76 29.85 0.11 0.98 16 16 C -0.60 -35.23 8.41 25.60 0.22 -35.02 16 17 H 0.05 2.95 7.06 -2.91 -0.02 2.93 16 18 C -0.04 -2.59 5.46 84.66 0.46 -2.12 16 19 N -0.94 -60.06 13.65 21.45 0.29 -59.76 16 20 Si 1.12 51.70 29.90 68.60 2.05 53.75 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 23 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 24 C -0.13 -2.62 9.60 22.36 0.21 -2.40 16 25 H 0.07 0.37 7.66 -2.39 -0.02 0.35 16 26 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.07 0.33 7.66 -2.38 -0.02 0.31 16 28 H 0.17 1.32 6.30 -2.91 -0.02 1.31 16 29 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 30 H 0.05 1.25 7.95 -2.39 -0.02 1.23 16 31 H 0.08 2.07 8.08 -2.39 -0.02 2.05 16 32 H 0.34 9.74 8.72 -89.69 -0.78 8.95 16 33 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.04 1.65 6.95 -2.39 -0.02 1.64 16 36 H 0.06 2.37 7.75 -2.39 -0.02 2.35 16 37 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 38 H -0.02 -0.87 8.00 -2.39 -0.02 -0.89 16 39 H -0.01 -0.78 8.01 -2.39 -0.02 -0.80 16 40 H 0.25 16.41 7.22 -92.71 -0.67 15.74 16 41 H 0.14 2.68 8.00 -2.91 -0.02 2.66 16 Total: -1.00 -70.29 343.57 3.65 -66.64 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.34 Total: 12.92 kcal Atomic # 6 Polarization: -44.62 SS G_CDS: 4.27 Total: -40.35 kcal Atomic # 7 Polarization: -80.30 SS G_CDS: -2.79 Total: -83.09 kcal Atomic # 8 Polarization: -5.47 SS G_CDS: -0.98 Total: -6.44 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.75 Total: -3.43 kcal Atomic # 14 Polarization: 51.70 SS G_CDS: 2.05 Total: 53.75 kcal Total: -70.29 3.65 -66.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602714401.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.433 kcal (2) G-P(sol) polarization free energy of solvation -70.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds