Wall clock time and date at job start Tue Mar 31 2020 05:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47339 * 2 1 4 4 C 1.36927 * 120.00338 * 262.46182 * 3 2 1 5 5 H 1.08004 * 120.00337 * 205.51096 * 4 3 2 6 6 C 1.38813 * 120.00247 * 25.51403 * 4 3 2 7 7 N 1.31624 * 119.99779 * 24.56489 * 6 4 3 8 8 Si 1.86803 * 120.00176 * 204.56896 * 6 4 3 9 9 H 1.48503 * 109.47129 * 59.99538 * 8 6 4 10 10 H 1.48495 * 109.47010 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.46940 * 299.99700 * 8 6 4 12 12 C 1.46503 * 119.99573 * 82.46024 * 3 2 1 13 13 C 1.50698 * 109.47229 * 234.85344 * 12 3 2 14 14 C 1.38233 * 119.99925 * 310.59208 * 13 12 3 15 15 C 1.38240 * 119.99870 * 179.76305 * 14 13 12 16 16 C 1.38232 * 119.99547 * 0.51639 * 15 14 13 17 17 C 1.38241 * 120.00321 * 359.73906 * 16 15 14 18 18 C 1.38232 * 119.99634 * 130.87155 * 13 12 3 19 19 C 1.50707 * 109.46664 * 114.85151 * 12 3 2 20 20 C 1.38230 * 119.99504 * 69.30679 * 19 12 3 21 21 C 1.38245 * 119.99623 * 179.76388 * 20 19 12 22 22 C 1.38232 * 119.99860 * 0.50148 * 21 20 19 23 23 C 1.38244 * 120.00194 * 359.74859 * 22 21 20 24 24 C 1.38232 * 120.00117 * 249.57216 * 19 12 3 25 25 H 1.09007 * 109.47177 * 299.72542 * 1 2 3 26 26 H 1.09003 * 109.47739 * 59.71654 * 1 2 3 27 27 H 1.08994 * 109.47584 * 179.72436 * 1 2 3 28 28 H 1.09008 * 109.46400 * 240.00770 * 2 1 3 29 29 H 1.08994 * 109.47337 * 120.00858 * 2 1 3 30 30 H 0.97002 * 119.99330 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.47069 * 354.85540 * 12 3 2 32 32 H 1.07998 * 119.99783 * 0.02562 * 14 13 12 33 33 H 1.07994 * 119.99956 * 180.23922 * 15 14 13 34 34 H 1.08004 * 119.99757 * 179.71967 * 16 15 14 35 35 H 1.07998 * 119.99811 * 179.97438 * 17 16 15 36 36 H 1.07995 * 120.00492 * 359.97438 * 18 13 12 37 37 H 1.07994 * 120.00764 * 359.97438 * 20 19 12 38 38 H 1.07997 * 119.99712 * 180.22423 * 21 20 19 39 39 H 1.07997 * 119.99963 * 179.72515 * 22 21 20 40 40 H 1.07993 * 120.00013 * 179.97438 * 23 22 21 41 41 H 1.08006 * 119.99958 * 0.02562 * 24 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3932 1.9749 -1.1755 5 1 3.1091 2.7836 -1.1679 6 6 1.8532 1.5375 -2.3772 7 7 0.6831 0.9349 -2.3922 8 14 2.7872 1.8039 -3.9729 9 1 4.1010 1.1158 -3.8983 10 1 2.0019 1.2492 -5.1046 11 1 3.0013 3.2581 -4.1841 12 6 2.1055 2.1272 1.2578 13 6 1.3363 3.4169 1.1313 14 6 1.5435 4.2411 0.0411 15 6 0.8343 5.4218 -0.0774 16 6 -0.0742 5.7834 0.8998 17 6 -0.2775 4.9616 1.9927 18 6 0.4279 3.7784 2.1085 19 6 3.5498 2.4314 1.5623 20 6 4.2451 3.3357 0.7814 21 6 5.5685 3.6184 1.0636 22 6 6.1996 2.9890 2.1203 23 6 5.5057 2.0808 2.8980 24 6 4.1809 1.8020 2.6189 25 1 -0.3634 0.5096 0.8925 26 1 -0.3635 0.5182 -0.8874 27 1 -0.3634 -1.0276 -0.0049 28 1 1.8932 -0.5138 -0.8902 29 1 1.8933 -0.5139 0.8898 30 1 0.3060 0.6289 -3.2319 31 1 1.6822 1.5293 2.0650 32 1 2.2563 3.9606 -0.7202 33 1 0.9934 6.0639 -0.9311 34 1 -0.6249 6.7080 0.8095 35 1 -0.9870 5.2444 2.7563 36 1 0.2690 3.1365 2.9623 37 1 3.7535 3.8239 -0.0470 38 1 6.1107 4.3276 0.4558 39 1 7.2348 3.2066 2.3380 40 1 5.9989 1.5888 3.7232 41 1 3.6390 1.0920 3.2261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609315968.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:56 Heat of formation + Delta-G solvation = 93.402511 kcal Electronic energy + Delta-G solvation = -22477.677406 eV Core-core repulsion = 19516.795264 eV Total energy + Delta-G solvation = -2960.882142 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.51867 -37.93289 -35.91811 -32.67237 -31.02864 -30.51954 -30.10617 -29.47771 -28.46161 -25.85360 -23.28241 -22.35792 -21.51091 -21.36278 -20.83542 -19.64701 -17.24935 -16.26088 -15.65078 -15.37654 -14.90076 -14.50460 -14.13223 -13.90397 -13.47920 -13.31631 -13.01238 -12.90255 -12.53467 -12.36395 -11.91526 -11.76256 -11.63208 -11.53127 -11.15570 -10.99415 -10.81475 -10.62741 -10.41824 -10.31552 -10.07699 -10.02740 -9.46731 -9.23252 -8.56582 -8.36033 -8.16875 -8.13703 -7.85330 -6.77950 -5.78832 -3.26907 1.88936 1.96291 2.15209 2.20588 3.31921 3.39777 3.42445 4.28670 4.47025 4.56703 5.19246 5.24365 5.39043 5.45970 5.53933 5.59290 5.64185 5.72196 5.76308 5.89352 6.02168 6.10348 6.21621 6.29604 6.39845 6.52132 6.54725 6.64118 6.73118 6.81762 6.88134 6.97278 7.01009 7.05706 7.10749 7.16962 7.27506 7.33765 7.46094 7.55400 7.57352 7.66438 7.81112 8.20429 8.40192 9.19586 9.73325 10.26509 11.14236 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011202 B = 0.008901 C = 0.007034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.860433 B = 3145.134190 C = 3979.804505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.179 3.821 3 N -0.574 5.574 4 C -0.258 4.258 5 H 0.078 0.922 6 C 0.012 3.988 7 N -0.877 5.877 8 Si 0.892 3.108 9 H -0.283 1.283 10 H -0.290 1.290 11 H -0.281 1.281 12 C 0.241 3.759 13 C -0.067 4.067 14 C -0.091 4.091 15 C -0.133 4.133 16 C -0.137 4.137 17 C -0.137 4.137 18 C -0.122 4.122 19 C -0.064 4.064 20 C -0.100 4.100 21 C -0.129 4.129 22 C -0.136 4.136 23 C -0.129 4.129 24 C -0.119 4.119 25 H 0.011 0.989 26 H 0.128 0.872 27 H 0.013 0.987 28 H 0.060 0.940 29 H 0.007 0.993 30 H 0.255 0.745 31 H 0.065 0.935 32 H 0.154 0.846 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.133 0.867 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.657 4.513 7.859 9.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.054 3.946 3 N -0.293 5.293 4 C -0.386 4.386 5 H 0.095 0.905 6 C -0.188 4.188 7 N -0.519 5.519 8 Si 0.721 3.279 9 H -0.209 1.209 10 H -0.216 1.216 11 H -0.207 1.207 12 C 0.133 3.867 13 C -0.069 4.069 14 C -0.109 4.109 15 C -0.151 4.151 16 C -0.155 4.155 17 C -0.155 4.155 18 C -0.141 4.141 19 C -0.066 4.066 20 C -0.118 4.118 21 C -0.147 4.147 22 C -0.155 4.155 23 C -0.147 4.147 24 C -0.138 4.138 25 H 0.030 0.970 26 H 0.146 0.854 27 H 0.032 0.968 28 H 0.078 0.922 29 H 0.025 0.975 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.171 0.829 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.151 0.849 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.536 4.373 7.679 9.517 hybrid contribution 0.236 0.000 -0.892 0.923 sum 3.772 4.373 6.787 8.911 Atomic orbital electron populations 1.22840 0.98682 0.98444 1.03994 1.20458 0.93067 0.83878 0.97150 1.44179 1.74849 1.09081 1.01225 1.19138 1.17948 1.18014 0.83544 0.90461 1.24954 0.95189 1.00759 0.97849 1.69775 1.14153 1.42794 1.25208 0.86533 0.79861 0.78108 0.83418 1.20928 1.21587 1.20720 1.18195 0.88288 0.89489 0.90680 1.20328 0.96739 0.95689 0.94139 1.21954 0.99800 0.91904 0.97238 1.21140 0.97784 0.97681 0.98507 1.20923 0.99568 0.99511 0.95494 1.20851 1.00564 0.95701 0.98392 1.20917 0.97517 0.96815 0.98805 1.20678 0.97964 0.94407 0.93574 1.21502 0.93980 0.97384 0.98920 1.21121 0.95409 1.00344 0.97829 1.20951 0.99194 0.98474 0.96841 1.20956 0.94769 0.99079 0.99925 1.20967 0.94788 1.00003 0.98013 0.96974 0.85434 0.96777 0.92187 0.97479 0.93482 0.91656 0.82892 0.87234 0.87559 0.87439 0.87369 0.84904 0.86940 0.87201 0.87078 0.86922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.15 9.80 37.15 0.36 -3.79 16 2 C 0.18 4.15 5.52 -4.04 -0.02 4.13 16 3 N -0.57 -13.32 2.43 -168.31 -0.41 -13.72 16 4 C -0.26 -6.34 6.47 -15.06 -0.10 -6.43 16 5 H 0.08 1.85 3.79 -52.48 -0.20 1.65 16 6 C 0.01 0.31 4.71 -17.43 -0.08 0.23 16 7 N -0.88 -23.28 8.88 55.49 0.49 -22.78 16 8 Si 0.89 20.52 29.62 -169.99 -5.03 15.48 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 C 0.24 4.91 2.82 -70.23 -0.20 4.71 16 13 C -0.07 -1.34 4.84 -104.63 -0.51 -1.85 16 14 C -0.09 -1.86 7.17 -39.58 -0.28 -2.14 16 15 C -0.13 -2.44 10.05 -39.58 -0.40 -2.84 16 16 C -0.14 -2.30 10.05 -39.58 -0.40 -2.70 16 17 C -0.14 -2.30 10.05 -39.58 -0.40 -2.69 16 18 C -0.12 -2.22 9.67 -39.59 -0.38 -2.60 16 19 C -0.06 -1.21 4.96 -104.62 -0.52 -1.73 16 20 C -0.10 -1.86 7.83 -39.58 -0.31 -2.17 16 21 C -0.13 -2.10 10.05 -39.58 -0.40 -2.50 16 22 C -0.14 -2.04 10.05 -39.58 -0.40 -2.44 16 23 C -0.13 -1.95 10.05 -39.58 -0.40 -2.35 16 24 C -0.12 -2.01 9.67 -39.59 -0.38 -2.39 16 25 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.13 3.33 5.05 -51.93 -0.26 3.07 16 27 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 1.51 6.99 -51.92 -0.36 1.15 16 29 H 0.01 0.15 8.12 -51.93 -0.42 -0.27 16 30 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 31 H 0.07 1.28 7.47 -51.93 -0.39 0.89 16 32 H 0.15 3.31 3.25 -52.49 -0.17 3.14 16 33 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16 35 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.11 1.76 7.98 -52.49 -0.42 1.34 16 37 H 0.13 2.58 3.69 -52.49 -0.19 2.38 16 38 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 40 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.11 1.71 7.97 -52.48 -0.42 1.29 16 LS Contribution 323.24 15.07 4.87 4.87 Total: -1.00 -26.81 323.24 -10.24 -37.05 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -5.35 Total: 8.66 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: -4.81 Total: -29.55 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.08 Total: -36.51 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -26.81 -10.24 -37.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609315968.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.452 kcal (2) G-P(sol) polarization free energy of solvation -26.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds