Wall clock time and date at job start Tue Mar 31 2020 05:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47339 * 2 1 4 4 C 1.36927 * 120.00338 * 262.46182 * 3 2 1 5 5 H 1.08004 * 120.00337 * 205.51096 * 4 3 2 6 6 C 1.38813 * 120.00247 * 25.51403 * 4 3 2 7 7 N 1.31624 * 119.99779 * 24.56489 * 6 4 3 8 8 Si 1.86803 * 120.00176 * 204.56896 * 6 4 3 9 9 H 1.48503 * 109.47129 * 59.99538 * 8 6 4 10 10 H 1.48495 * 109.47010 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.46940 * 299.99700 * 8 6 4 12 12 C 1.46503 * 119.99573 * 82.46024 * 3 2 1 13 13 C 1.50698 * 109.47229 * 234.85344 * 12 3 2 14 14 C 1.38233 * 119.99925 * 310.59208 * 13 12 3 15 15 C 1.38240 * 119.99870 * 179.76305 * 14 13 12 16 16 C 1.38232 * 119.99547 * 0.51639 * 15 14 13 17 17 C 1.38241 * 120.00321 * 359.73906 * 16 15 14 18 18 C 1.38232 * 119.99634 * 130.87155 * 13 12 3 19 19 C 1.50707 * 109.46664 * 114.85151 * 12 3 2 20 20 C 1.38230 * 119.99504 * 69.30679 * 19 12 3 21 21 C 1.38245 * 119.99623 * 179.76388 * 20 19 12 22 22 C 1.38232 * 119.99860 * 0.50148 * 21 20 19 23 23 C 1.38244 * 120.00194 * 359.74859 * 22 21 20 24 24 C 1.38232 * 120.00117 * 249.57216 * 19 12 3 25 25 H 1.09007 * 109.47177 * 299.72542 * 1 2 3 26 26 H 1.09003 * 109.47739 * 59.71654 * 1 2 3 27 27 H 1.08994 * 109.47584 * 179.72436 * 1 2 3 28 28 H 1.09008 * 109.46400 * 240.00770 * 2 1 3 29 29 H 1.08994 * 109.47337 * 120.00858 * 2 1 3 30 30 H 0.97002 * 119.99330 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.47069 * 354.85540 * 12 3 2 32 32 H 1.07998 * 119.99783 * 0.02562 * 14 13 12 33 33 H 1.07994 * 119.99956 * 180.23922 * 15 14 13 34 34 H 1.08004 * 119.99757 * 179.71967 * 16 15 14 35 35 H 1.07998 * 119.99811 * 179.97438 * 17 16 15 36 36 H 1.07995 * 120.00492 * 359.97438 * 18 13 12 37 37 H 1.07994 * 120.00764 * 359.97438 * 20 19 12 38 38 H 1.07997 * 119.99712 * 180.22423 * 21 20 19 39 39 H 1.07997 * 119.99963 * 179.72515 * 22 21 20 40 40 H 1.07993 * 120.00013 * 179.97438 * 23 22 21 41 41 H 1.08006 * 119.99958 * 0.02562 * 24 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3932 1.9749 -1.1755 5 1 3.1091 2.7836 -1.1679 6 6 1.8532 1.5375 -2.3772 7 7 0.6831 0.9349 -2.3922 8 14 2.7872 1.8039 -3.9729 9 1 4.1010 1.1158 -3.8983 10 1 2.0019 1.2492 -5.1046 11 1 3.0013 3.2581 -4.1841 12 6 2.1055 2.1272 1.2578 13 6 1.3363 3.4169 1.1313 14 6 1.5435 4.2411 0.0411 15 6 0.8343 5.4218 -0.0774 16 6 -0.0742 5.7834 0.8998 17 6 -0.2775 4.9616 1.9927 18 6 0.4279 3.7784 2.1085 19 6 3.5498 2.4314 1.5623 20 6 4.2451 3.3357 0.7814 21 6 5.5685 3.6184 1.0636 22 6 6.1996 2.9890 2.1203 23 6 5.5057 2.0808 2.8980 24 6 4.1809 1.8020 2.6189 25 1 -0.3634 0.5096 0.8925 26 1 -0.3635 0.5182 -0.8874 27 1 -0.3634 -1.0276 -0.0049 28 1 1.8932 -0.5138 -0.8902 29 1 1.8933 -0.5139 0.8898 30 1 0.3060 0.6289 -3.2319 31 1 1.6822 1.5293 2.0650 32 1 2.2563 3.9606 -0.7202 33 1 0.9934 6.0639 -0.9311 34 1 -0.6249 6.7080 0.8095 35 1 -0.9870 5.2444 2.7563 36 1 0.2690 3.1365 2.9623 37 1 3.7535 3.8239 -0.0470 38 1 6.1107 4.3276 0.4558 39 1 7.2348 3.2066 2.3380 40 1 5.9989 1.5888 3.7232 41 1 3.6390 1.0920 3.2261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609315968.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:55 Heat of formation + Delta-G solvation = 83.192667 kcal Electronic energy + Delta-G solvation = -22478.120138 eV Core-core repulsion = 19516.795264 eV Total energy + Delta-G solvation = -2961.324874 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.94609 -39.25670 -37.57911 -34.27956 -32.75316 -31.95482 -31.45657 -30.81330 -30.20945 -27.46289 -24.98673 -23.80762 -22.85649 -22.73757 -22.50588 -21.16881 -18.94481 -17.57002 -17.21568 -16.94030 -16.39999 -15.88935 -15.80882 -15.25776 -15.06759 -14.95785 -14.38710 -14.34268 -14.03775 -13.86903 -13.53639 -13.26773 -13.15175 -13.01990 -12.79333 -12.68308 -12.51923 -12.30277 -12.11276 -11.79865 -11.61891 -11.49513 -11.13314 -11.09233 -10.45551 -9.64371 -9.56813 -9.53213 -9.26816 -8.60301 -7.69153 -5.17834 0.56454 0.67818 0.74850 0.81233 1.45800 1.50776 1.54631 2.53208 3.02636 3.12061 3.36282 3.67846 4.12397 4.17537 4.25298 4.26145 4.31199 4.37763 4.43518 4.52629 4.56466 4.69698 4.80927 4.89682 4.91217 4.99216 5.01028 5.19911 5.22795 5.29368 5.34563 5.36287 5.44996 5.57997 5.68188 5.72703 5.75190 5.80430 5.86562 5.96056 6.07485 6.28970 6.31045 6.38524 6.53478 7.30150 7.90521 8.39889 9.22466 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011202 B = 0.008901 C = 0.007034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.860433 B = 3145.134190 C = 3979.804505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.182 3.818 3 N -0.586 5.586 4 C -0.243 4.243 5 H 0.081 0.919 6 C -0.036 4.036 7 N -0.903 5.903 8 Si 0.938 3.062 9 H -0.287 1.287 10 H -0.298 1.298 11 H -0.276 1.276 12 C 0.242 3.758 13 C -0.085 4.085 14 C -0.112 4.112 15 C -0.146 4.146 16 C -0.135 4.135 17 C -0.134 4.134 18 C -0.134 4.134 19 C -0.085 4.085 20 C -0.122 4.122 21 C -0.137 4.137 22 C -0.132 4.132 23 C -0.126 4.126 24 C -0.129 4.129 25 H 0.014 0.986 26 H 0.100 0.900 27 H 0.027 0.973 28 H 0.032 0.968 29 H 0.026 0.974 30 H 0.245 0.755 31 H 0.067 0.933 32 H 0.133 0.867 33 H 0.123 0.877 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.125 0.875 37 H 0.116 0.884 38 H 0.131 0.869 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.524 5.566 9.994 12.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.057 3.943 3 N -0.306 5.306 4 C -0.373 4.373 5 H 0.098 0.902 6 C -0.233 4.233 7 N -0.549 5.549 8 Si 0.767 3.233 9 H -0.214 1.214 10 H -0.225 1.225 11 H -0.202 1.202 12 C 0.136 3.864 13 C -0.087 4.087 14 C -0.130 4.130 15 C -0.164 4.164 16 C -0.153 4.153 17 C -0.152 4.152 18 C -0.152 4.152 19 C -0.087 4.087 20 C -0.141 4.141 21 C -0.155 4.155 22 C -0.150 4.150 23 C -0.143 4.143 24 C -0.148 4.148 25 H 0.033 0.967 26 H 0.118 0.882 27 H 0.046 0.954 28 H 0.051 0.949 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.150 0.850 33 H 0.141 0.859 34 H 0.157 0.843 35 H 0.160 0.840 36 H 0.143 0.857 37 H 0.133 0.867 38 H 0.149 0.851 39 H 0.162 0.838 40 H 0.162 0.838 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.423 5.453 9.836 12.085 hybrid contribution 0.024 -0.233 -1.397 1.416 sum 4.447 5.221 8.439 10.874 Atomic orbital electron populations 1.22636 0.98600 0.98867 1.02620 1.20368 0.93121 0.84235 0.96586 1.44292 1.75034 1.09323 1.01915 1.19357 1.16894 1.16905 0.84122 0.90201 1.25454 0.95978 1.02056 0.99780 1.69944 1.15197 1.44975 1.24737 0.85787 0.78465 0.77943 0.81065 1.21434 1.22489 1.20213 1.18277 0.89595 0.89465 0.89113 1.20395 0.97491 0.95910 0.94876 1.21848 1.00369 0.93357 0.97454 1.21392 0.98059 0.97313 0.99684 1.21316 0.98747 1.00578 0.94636 1.21275 1.00232 0.94701 0.98949 1.21203 0.97193 0.97896 0.98955 1.20558 0.97182 0.95848 0.95128 1.21476 0.95270 0.98224 0.99087 1.21394 0.94616 1.00825 0.98652 1.21370 1.00672 0.97333 0.95631 1.21356 0.94002 0.98546 1.00444 1.21207 0.95885 1.00073 0.97614 0.96697 0.88187 0.95444 0.94904 0.95625 0.94487 0.91437 0.84987 0.85917 0.84294 0.84043 0.85719 0.86656 0.85129 0.83839 0.83760 0.85611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.82 9.80 71.98 0.71 -7.12 16 2 C 0.18 8.57 5.52 86.38 0.48 9.05 16 3 N -0.59 -27.70 2.43 -686.40 -1.67 -29.36 16 4 C -0.24 -12.31 6.47 84.04 0.54 -11.76 16 5 H 0.08 3.98 3.79 -2.91 -0.01 3.97 16 6 C -0.04 -1.92 4.71 84.86 0.40 -1.52 16 7 N -0.90 -49.86 8.88 21.65 0.19 -49.67 16 8 Si 0.94 43.59 29.62 68.60 2.03 45.62 16 9 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 10 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 12 C 0.24 9.90 2.82 43.50 0.12 10.02 16 13 C -0.08 -3.42 4.84 -19.87 -0.10 -3.51 16 14 C -0.11 -4.66 7.17 22.27 0.16 -4.50 16 15 C -0.15 -5.30 10.05 22.27 0.22 -5.07 16 16 C -0.13 -4.22 10.05 22.27 0.22 -4.00 16 17 C -0.13 -4.13 10.05 22.27 0.22 -3.91 16 18 C -0.13 -4.70 9.67 22.27 0.22 -4.49 16 19 C -0.08 -3.19 4.96 -19.87 -0.10 -3.29 16 20 C -0.12 -4.57 7.83 22.27 0.17 -4.39 16 21 C -0.14 -4.26 10.05 22.27 0.22 -4.04 16 22 C -0.13 -3.54 10.05 22.27 0.22 -3.31 16 23 C -0.13 -3.39 10.05 22.27 0.22 -3.17 16 24 C -0.13 -4.13 9.67 22.27 0.22 -3.91 16 25 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 26 H 0.10 5.38 5.05 -2.39 -0.01 5.37 16 27 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.03 1.70 6.99 -2.38 -0.02 1.68 16 29 H 0.03 1.09 8.12 -2.39 -0.02 1.07 16 30 H 0.25 13.44 8.31 -92.71 -0.77 12.67 16 31 H 0.07 2.64 7.47 -2.39 -0.02 2.62 16 32 H 0.13 5.97 3.25 -2.91 -0.01 5.97 16 33 H 0.12 3.96 8.06 -2.91 -0.02 3.94 16 34 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 35 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 36 H 0.12 3.85 7.98 -2.91 -0.02 3.82 16 37 H 0.12 4.65 3.69 -2.91 -0.01 4.64 16 38 H 0.13 3.45 8.06 -2.91 -0.02 3.43 16 39 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 40 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 41 H 0.13 3.57 7.97 -2.91 -0.02 3.54 16 Total: -1.00 -59.03 323.24 5.74 -53.29 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: 1.03 Total: 29.07 kcal Atomic # 6 Polarization: -53.10 SS G_CDS: 4.16 Total: -48.94 kcal Atomic # 7 Polarization: -77.56 SS G_CDS: -1.47 Total: -79.04 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -59.03 5.74 -53.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609315968.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.479 kcal (2) G-P(sol) polarization free energy of solvation -59.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds