Wall clock time and date at job start Tue Mar 31 2020 05:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47313 * 2 1 4 4 C 1.50693 * 109.46912 * 120.00015 * 2 1 3 5 5 H 1.08001 * 120.00164 * 120.00131 * 4 2 1 6 6 C 1.37882 * 120.00234 * 300.00044 * 4 2 1 7 7 N 1.31518 * 119.99669 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00137 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47532 * 59.99930 * 8 6 4 10 10 H 1.48500 * 109.47118 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47158 * 299.99872 * 8 6 4 12 12 N 1.46899 * 109.47040 * 239.99990 * 2 1 3 13 13 C 1.46901 * 111.00226 * 85.00484 * 12 2 1 14 14 C 1.50696 * 109.47258 * 179.97438 * 13 12 2 15 15 C 1.38325 * 119.87826 * 89.99933 * 14 13 12 16 16 C 1.38018 * 120.11856 * 180.02562 * 15 14 13 17 17 C 1.39336 * 119.88184 * 359.97438 * 16 15 14 18 18 C 1.48385 * 120.12611 * 179.97438 * 17 16 15 19 19 C 1.39336 * 120.12611 * 180.02562 * 18 17 16 20 20 C 1.38018 * 119.88184 * 180.02562 * 19 18 17 21 21 C 1.38325 * 120.11852 * 359.97438 * 20 19 18 22 22 C 1.38323 * 120.24425 * 0.26101 * 21 20 19 23 23 C 1.38017 * 120.11916 * 359.48375 * 22 21 20 24 24 C 1.39348 * 119.75465 * 0.25348 * 17 16 15 25 25 C 1.38012 * 119.87390 * 359.49361 * 24 17 16 26 26 H 1.08996 * 109.46636 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47244 * 300.00527 * 1 2 3 28 28 H 1.09005 * 109.46651 * 59.99950 * 1 2 3 29 29 H 0.96995 * 119.99512 * 179.97438 * 7 6 4 30 30 H 1.00899 * 111.00258 * 321.04462 * 12 2 1 31 31 H 1.08997 * 109.47174 * 59.99465 * 13 12 2 32 32 H 1.09004 * 109.46768 * 299.99988 * 13 12 2 33 33 H 1.07998 * 119.94059 * 359.97438 * 15 14 13 34 34 H 1.08004 * 120.06312 * 179.97438 * 16 15 14 35 35 H 1.08004 * 120.05503 * 0.02562 * 19 18 17 36 36 H 1.07997 * 119.94085 * 180.02562 * 20 19 18 37 37 H 1.08002 * 119.87397 * 179.97438 * 21 20 19 38 38 H 1.07998 * 119.93885 * 179.74853 * 22 21 20 39 39 H 1.08001 * 120.05836 * 180.24189 * 23 22 21 40 40 H 1.08003 * 120.05757 * 179.74578 * 24 17 16 41 41 H 1.08005 * 119.93908 * 180.25699 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8303 2.6034 8 14 2.3224 -1.1195 4.0079 9 1 3.8075 -1.1190 4.0078 10 1 1.8278 -0.4192 5.2204 11 1 1.8279 -2.5198 4.0081 12 7 2.0197 -0.6925 -1.1994 13 6 2.0826 0.2226 -2.3469 14 6 2.5886 -0.5215 -3.5557 15 6 1.6937 -1.1518 -4.4014 16 6 2.1517 -1.8351 -5.5096 17 6 3.5183 -1.8890 -5.7761 18 6 4.0168 -2.6226 -6.9657 19 6 5.3834 -2.6770 -7.2319 20 6 5.8414 -3.3603 -8.3401 21 6 4.9465 -3.9910 -9.1855 22 6 3.5884 -3.9362 -8.9288 23 6 3.1198 -3.2601 -7.8206 24 6 4.4157 -1.2563 -4.9181 25 6 3.9463 -0.5714 -3.8157 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 0.7089 1.1614 3.4843 30 1 1.4496 -1.4979 -1.4100 31 1 2.7590 1.0462 -2.1182 32 1 1.0872 0.6164 -2.5525 33 1 0.6347 -1.1097 -4.1937 34 1 1.4522 -2.3272 -6.1691 35 1 6.0829 -2.1852 -6.5722 36 1 6.9005 -3.4034 -8.5471 37 1 5.3093 -4.5243 -10.0519 38 1 2.8938 -4.4270 -9.5944 39 1 2.0595 -3.2213 -7.6189 40 1 5.4763 -1.2984 -5.1177 41 1 4.6406 -0.0771 -3.1523 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609449211.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:20 Heat of formation + Delta-G solvation = 43.145106 kcal Electronic energy + Delta-G solvation = -20133.197873 eV Core-core repulsion = 17170.136407 eV Total energy + Delta-G solvation = -2963.061467 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.92912 -38.47510 -35.98564 -33.40567 -32.02803 -31.54577 -30.49337 -29.81073 -27.62878 -25.19222 -24.52751 -23.55572 -22.30991 -21.46611 -20.43646 -20.16902 -17.69235 -16.45466 -16.02486 -15.53816 -15.29826 -14.73785 -14.44515 -14.30059 -14.01923 -13.87492 -13.56311 -13.31631 -13.12029 -12.81347 -12.63084 -12.27354 -11.70690 -11.63134 -11.48145 -11.33551 -11.03929 -10.86320 -10.75488 -10.63029 -10.43544 -10.14164 -9.92195 -9.56702 -9.14280 -9.01797 -8.79654 -8.35371 -7.93857 -7.23371 -5.97800 -4.01098 0.65037 1.21558 1.56754 1.91473 3.35416 3.39033 3.42740 3.56478 4.09014 4.45642 4.53081 4.60374 4.75923 4.85088 5.05287 5.10604 5.17057 5.24707 5.25708 5.33622 5.52237 5.57967 5.67466 5.75570 5.82408 5.95423 6.02107 6.19885 6.21928 6.27495 6.31476 6.32105 6.54887 6.68095 6.73336 6.80648 6.82525 6.90471 7.08603 7.12650 7.35288 7.73759 7.88570 8.26843 8.52705 8.60928 9.05920 9.64133 11.09189 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.033219 B = 0.002770 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.694670 B =10107.228387 C =10451.419990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.211 3.789 3 H 0.034 0.966 4 C -0.495 4.495 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.677 5.677 13 C 0.092 3.908 14 C -0.058 4.058 15 C -0.116 4.116 16 C -0.109 4.109 17 C -0.065 4.065 18 C -0.032 4.032 19 C -0.115 4.115 20 C -0.118 4.118 21 C -0.128 4.128 22 C -0.118 4.118 23 C -0.116 4.116 24 C -0.109 4.109 25 C -0.097 4.097 26 H 0.028 0.972 27 H 0.089 0.911 28 H 0.005 0.995 29 H 0.260 0.740 30 H 0.326 0.674 31 H 0.074 0.926 32 H 0.029 0.971 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.238 -5.975 -22.015 23.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.103 3.897 3 H 0.052 0.948 4 C -0.534 4.534 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.307 5.307 13 C -0.037 4.037 14 C -0.059 4.059 15 C -0.134 4.134 16 C -0.127 4.127 17 C -0.065 4.065 18 C -0.032 4.032 19 C -0.133 4.133 20 C -0.136 4.136 21 C -0.146 4.146 22 C -0.136 4.136 23 C -0.134 4.134 24 C -0.127 4.127 25 C -0.116 4.116 26 H 0.047 0.953 27 H 0.108 0.892 28 H 0.024 0.976 29 H 0.070 0.930 30 H 0.143 0.857 31 H 0.092 0.908 32 H 0.047 0.953 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.826 -5.755 -21.678 23.173 hybrid contribution -0.734 -0.358 0.672 1.058 sum 5.092 -6.113 -21.005 22.462 Atomic orbital electron populations 1.22441 1.00712 0.99222 1.00517 1.19199 0.89617 0.94449 0.86389 0.94824 1.21119 1.30246 1.12456 0.89563 0.91983 1.24954 0.95351 0.95220 0.99041 1.69875 1.37313 1.23173 1.23451 0.86555 0.79190 0.79596 0.81992 1.20286 1.21469 1.20371 1.60887 1.58230 1.08803 1.02776 1.20938 0.98694 0.95263 0.88784 1.20172 0.93498 0.96725 0.95500 1.21013 0.99659 0.98018 0.94745 1.21103 0.94434 0.99500 0.97645 1.18681 0.93464 0.99502 0.94830 1.18872 0.93245 0.96961 0.94158 1.21279 0.94851 0.99528 0.97639 1.21089 0.99682 0.97838 0.94971 1.21180 0.93482 1.00161 0.99757 1.21082 0.95695 0.99418 0.97419 1.21266 0.99668 0.97762 0.94663 1.21176 0.99056 0.97720 0.94737 1.21021 0.95286 0.98815 0.96476 0.95323 0.89202 0.97622 0.93016 0.85727 0.90799 0.95339 0.86121 0.86171 0.85652 0.86012 0.86243 0.86043 0.85733 0.86070 0.85539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.07 8.94 37.16 0.33 -3.74 16 2 C 0.21 5.30 2.57 -68.86 -0.18 5.12 16 3 H 0.03 0.92 7.80 -51.93 -0.40 0.52 16 4 C -0.50 -13.77 8.84 -34.44 -0.30 -14.07 16 5 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -25.74 11.32 55.43 0.63 -25.11 16 8 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.68 -14.43 6.22 -109.22 -0.68 -15.11 16 13 C 0.09 1.66 5.60 -4.98 -0.03 1.63 16 14 C -0.06 -0.91 5.40 -104.56 -0.56 -1.47 16 15 C -0.12 -1.62 9.68 -39.63 -0.38 -2.00 16 16 C -0.11 -1.38 9.43 -39.25 -0.37 -1.75 16 17 C -0.06 -0.83 5.88 -104.90 -0.62 -1.45 16 18 C -0.03 -0.37 5.88 -104.90 -0.62 -0.99 16 19 C -0.12 -1.19 9.43 -39.25 -0.37 -1.56 16 20 C -0.12 -1.05 10.03 -39.63 -0.40 -1.45 16 21 C -0.13 -1.09 10.04 -39.52 -0.40 -1.48 16 22 C -0.12 -1.05 10.03 -39.63 -0.40 -1.45 16 23 C -0.12 -1.19 9.43 -39.25 -0.37 -1.56 16 24 C -0.11 -1.42 9.43 -39.25 -0.37 -1.79 16 25 C -0.10 -1.42 9.68 -39.63 -0.38 -1.81 16 26 H 0.03 0.66 8.13 -51.93 -0.42 0.23 16 27 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 28 H 0.00 0.10 7.45 -51.93 -0.39 -0.28 16 29 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.33 6.71 8.46 -39.29 -0.33 6.38 16 31 H 0.07 1.34 8.00 -51.93 -0.42 0.93 16 32 H 0.03 0.50 7.38 -51.93 -0.38 0.12 16 33 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.12 1.24 6.21 -52.48 -0.33 0.92 16 35 H 0.13 1.13 6.21 -52.48 -0.33 0.81 16 36 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 37 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.12 1.10 6.21 -52.49 -0.33 0.78 16 40 H 0.12 1.30 6.21 -52.48 -0.33 0.97 16 41 H 0.13 1.78 8.06 -52.48 -0.42 1.36 16 LS Contribution 338.53 15.07 5.10 5.10 Total: -1.00 -29.60 338.53 -11.10 -40.70 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -5.62 Total: 6.22 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: -5.51 Total: -28.40 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: -0.05 Total: -40.23 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.60 -11.10 -40.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609449211.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.848 kcal (2) G-P(sol) polarization free energy of solvation -29.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds