Wall clock time and date at job start Tue Mar 31 2020 05:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47313 * 2 1 4 4 C 1.50693 * 109.46912 * 120.00015 * 2 1 3 5 5 H 1.08001 * 120.00164 * 120.00131 * 4 2 1 6 6 C 1.37882 * 120.00234 * 300.00044 * 4 2 1 7 7 N 1.31518 * 119.99669 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00137 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47532 * 59.99930 * 8 6 4 10 10 H 1.48500 * 109.47118 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47158 * 299.99872 * 8 6 4 12 12 N 1.46899 * 109.47040 * 239.99990 * 2 1 3 13 13 C 1.46901 * 111.00226 * 85.00484 * 12 2 1 14 14 C 1.50696 * 109.47258 * 179.97438 * 13 12 2 15 15 C 1.38325 * 119.87826 * 89.99933 * 14 13 12 16 16 C 1.38018 * 120.11856 * 180.02562 * 15 14 13 17 17 C 1.39336 * 119.88184 * 359.97438 * 16 15 14 18 18 C 1.48385 * 120.12611 * 179.97438 * 17 16 15 19 19 C 1.39336 * 120.12611 * 180.02562 * 18 17 16 20 20 C 1.38018 * 119.88184 * 180.02562 * 19 18 17 21 21 C 1.38325 * 120.11852 * 359.97438 * 20 19 18 22 22 C 1.38323 * 120.24425 * 0.26101 * 21 20 19 23 23 C 1.38017 * 120.11916 * 359.48375 * 22 21 20 24 24 C 1.39348 * 119.75465 * 0.25348 * 17 16 15 25 25 C 1.38012 * 119.87390 * 359.49361 * 24 17 16 26 26 H 1.08996 * 109.46636 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47244 * 300.00527 * 1 2 3 28 28 H 1.09005 * 109.46651 * 59.99950 * 1 2 3 29 29 H 0.96995 * 119.99512 * 179.97438 * 7 6 4 30 30 H 1.00899 * 111.00258 * 321.04462 * 12 2 1 31 31 H 1.08997 * 109.47174 * 59.99465 * 13 12 2 32 32 H 1.09004 * 109.46768 * 299.99988 * 13 12 2 33 33 H 1.07998 * 119.94059 * 359.97438 * 15 14 13 34 34 H 1.08004 * 120.06312 * 179.97438 * 16 15 14 35 35 H 1.08004 * 120.05503 * 0.02562 * 19 18 17 36 36 H 1.07997 * 119.94085 * 180.02562 * 20 19 18 37 37 H 1.08002 * 119.87397 * 179.97438 * 21 20 19 38 38 H 1.07998 * 119.93885 * 179.74853 * 22 21 20 39 39 H 1.08001 * 120.05836 * 180.24189 * 23 22 21 40 40 H 1.08003 * 120.05757 * 179.74578 * 24 17 16 41 41 H 1.08005 * 119.93908 * 180.25699 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8303 2.6034 8 14 2.3224 -1.1195 4.0079 9 1 3.8075 -1.1190 4.0078 10 1 1.8278 -0.4192 5.2204 11 1 1.8279 -2.5198 4.0081 12 7 2.0197 -0.6925 -1.1994 13 6 2.0826 0.2226 -2.3469 14 6 2.5886 -0.5215 -3.5557 15 6 1.6937 -1.1518 -4.4014 16 6 2.1517 -1.8351 -5.5096 17 6 3.5183 -1.8890 -5.7761 18 6 4.0168 -2.6226 -6.9657 19 6 5.3834 -2.6770 -7.2319 20 6 5.8414 -3.3603 -8.3401 21 6 4.9465 -3.9910 -9.1855 22 6 3.5884 -3.9362 -8.9288 23 6 3.1198 -3.2601 -7.8206 24 6 4.4157 -1.2563 -4.9181 25 6 3.9463 -0.5714 -3.8157 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 0.7089 1.1614 3.4843 30 1 1.4496 -1.4979 -1.4100 31 1 2.7590 1.0462 -2.1182 32 1 1.0872 0.6164 -2.5525 33 1 0.6347 -1.1097 -4.1937 34 1 1.4522 -2.3272 -6.1691 35 1 6.0829 -2.1852 -6.5722 36 1 6.9005 -3.4034 -8.5471 37 1 5.3093 -4.5243 -10.0519 38 1 2.8938 -4.4270 -9.5944 39 1 2.0595 -3.2213 -7.6189 40 1 5.4763 -1.2984 -5.1177 41 1 4.6406 -0.0771 -3.1523 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609449211.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:19 Heat of formation + Delta-G solvation = 28.544981 kcal Electronic energy + Delta-G solvation = -20133.830982 eV Core-core repulsion = 17170.136407 eV Total energy + Delta-G solvation = -2963.694576 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.83292 -39.40451 -37.67483 -34.94544 -33.52320 -32.38823 -31.37386 -31.16451 -29.05506 -27.25273 -25.86546 -24.42287 -23.33887 -22.37314 -22.09529 -21.43367 -18.66294 -18.26101 -16.88678 -16.81505 -16.60486 -16.35043 -15.76309 -15.25048 -15.14374 -15.03606 -14.70859 -14.51071 -14.24402 -13.97579 -13.86251 -13.63959 -13.34673 -13.06760 -12.86512 -12.75352 -12.53709 -12.30833 -12.20101 -12.14034 -11.98080 -11.70153 -11.50130 -11.06224 -10.51407 -10.48518 -9.85443 -9.82436 -9.03389 -8.82445 -8.09676 -6.21193 -0.23511 0.51169 0.53070 0.99475 1.43300 1.45015 1.52891 2.43936 2.69996 3.15985 3.18257 3.64749 3.75942 3.81763 4.01396 4.04651 4.15361 4.18200 4.35244 4.38684 4.51694 4.58653 4.59374 4.67750 4.77264 4.84813 4.89451 4.94961 5.07990 5.10234 5.14359 5.23002 5.37975 5.39699 5.42595 5.62679 5.63429 5.68431 5.76835 5.80906 5.83492 6.05926 6.12958 6.26280 6.62821 6.79112 6.93026 7.48612 8.95432 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.033219 B = 0.002770 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.694670 B =10107.228387 C =10451.419990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.216 3.784 3 H 0.003 0.997 4 C -0.517 4.517 5 H 0.053 0.947 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.961 3.039 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.271 1.271 12 N -0.681 5.681 13 C 0.100 3.900 14 C -0.081 4.081 15 C -0.118 4.118 16 C -0.112 4.112 17 C -0.061 4.061 18 C -0.060 4.060 19 C -0.126 4.126 20 C -0.125 4.125 21 C -0.126 4.126 22 C -0.124 4.124 23 C -0.125 4.125 24 C -0.114 4.114 25 C -0.109 4.109 26 H 0.032 0.968 27 H 0.063 0.937 28 H 0.026 0.974 29 H 0.261 0.739 30 H 0.331 0.669 31 H 0.063 0.937 32 H 0.031 0.969 33 H 0.130 0.870 34 H 0.145 0.855 35 H 0.132 0.868 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.134 0.866 40 H 0.141 0.859 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.789 -7.664 -23.925 25.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.107 3.893 3 H 0.021 0.979 4 C -0.555 4.555 5 H 0.071 0.929 6 C -0.190 4.190 7 N -0.562 5.562 8 Si 0.787 3.213 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.197 1.197 12 N -0.311 5.311 13 C -0.029 4.029 14 C -0.081 4.081 15 C -0.137 4.137 16 C -0.130 4.130 17 C -0.061 4.061 18 C -0.060 4.060 19 C -0.144 4.144 20 C -0.142 4.142 21 C -0.144 4.144 22 C -0.142 4.142 23 C -0.143 4.143 24 C -0.132 4.132 25 C -0.127 4.127 26 H 0.051 0.949 27 H 0.081 0.919 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.148 0.852 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.148 0.852 34 H 0.162 0.838 35 H 0.150 0.850 36 H 0.161 0.839 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.152 0.848 40 H 0.159 0.841 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.379 -7.448 -23.607 25.563 hybrid contribution -0.846 0.122 1.087 1.382 sum 5.534 -7.326 -22.521 24.320 Atomic orbital electron populations 1.22244 0.99879 0.99295 1.00197 1.18959 0.90152 0.92750 0.87421 0.97905 1.21414 1.30528 1.12498 0.91084 0.92869 1.25722 0.95464 0.95895 1.01878 1.70000 1.37971 1.24186 1.24087 0.85567 0.78633 0.78674 0.78456 1.19953 1.20878 1.19667 1.60731 1.57986 1.09334 1.03018 1.20843 0.98707 0.94724 0.88632 1.19973 0.94275 0.98492 0.95386 1.21135 0.99903 0.97782 0.94863 1.21369 0.95009 0.99153 0.97459 1.18967 0.93581 0.98545 0.94993 1.18948 0.94175 0.98432 0.94425 1.21490 0.94630 0.99885 0.98419 1.21411 1.01088 0.97295 0.94445 1.21584 0.93368 0.99313 1.00157 1.21418 0.96519 0.99015 0.97238 1.21490 1.00123 0.97712 0.94940 1.21381 1.00299 0.97333 0.94181 1.21088 0.94981 0.99402 0.97242 0.94910 0.91860 0.95480 0.92952 0.85195 0.91882 0.95066 0.85225 0.83788 0.85037 0.83852 0.83688 0.83733 0.84789 0.84129 0.85896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.60 8.94 71.98 0.64 -6.96 16 2 C 0.22 11.10 2.57 44.17 0.11 11.21 16 3 H 0.00 0.17 7.80 -2.39 -0.02 0.15 16 4 C -0.52 -29.24 8.84 25.60 0.23 -29.01 16 5 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 6 C 0.01 0.48 5.30 84.66 0.45 0.93 16 7 N -0.92 -53.66 11.32 21.45 0.24 -53.41 16 8 Si 0.96 44.52 29.54 68.60 2.03 46.54 16 9 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 12 N -0.68 -29.57 6.22 -499.47 -3.11 -32.67 16 13 C 0.10 3.66 5.60 85.56 0.48 4.14 16 14 C -0.08 -2.54 5.40 -19.83 -0.11 -2.64 16 15 C -0.12 -3.23 9.68 22.24 0.22 -3.02 16 16 C -0.11 -2.70 9.43 22.48 0.21 -2.49 16 17 C -0.06 -1.49 5.88 -20.04 -0.12 -1.61 16 18 C -0.06 -1.29 5.88 -20.04 -0.12 -1.41 16 19 C -0.13 -2.39 9.43 22.48 0.21 -2.18 16 20 C -0.12 -1.90 10.03 22.24 0.22 -1.68 16 21 C -0.13 -1.75 10.04 22.31 0.22 -1.53 16 22 C -0.12 -1.84 10.03 22.24 0.22 -1.62 16 23 C -0.12 -2.29 9.43 22.48 0.21 -2.08 16 24 C -0.11 -2.90 9.43 22.48 0.21 -2.69 16 25 C -0.11 -3.20 9.68 22.24 0.22 -2.98 16 26 H 0.03 1.51 8.13 -2.39 -0.02 1.49 16 27 H 0.06 3.42 6.07 -2.39 -0.01 3.41 16 28 H 0.03 1.15 7.45 -2.38 -0.02 1.13 16 29 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 30 H 0.33 13.72 8.46 -89.69 -0.76 12.96 16 31 H 0.06 2.40 8.00 -2.39 -0.02 2.38 16 32 H 0.03 1.12 7.38 -2.38 -0.02 1.10 16 33 H 0.13 3.21 8.06 -2.91 -0.02 3.19 16 34 H 0.14 2.68 6.21 -2.91 -0.02 2.66 16 35 H 0.13 2.18 6.21 -2.91 -0.02 2.16 16 36 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 37 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 38 H 0.14 1.41 8.06 -2.91 -0.02 1.38 16 39 H 0.13 2.06 6.21 -2.91 -0.02 2.05 16 40 H 0.14 2.89 6.21 -2.91 -0.02 2.87 16 41 H 0.12 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -63.62 338.53 2.95 -60.67 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 0.27 Total: 24.51 kcal Atomic # 6 Polarization: -49.14 SS G_CDS: 3.52 Total: -45.62 kcal Atomic # 7 Polarization: -83.22 SS G_CDS: -2.86 Total: -86.09 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -63.62 2.95 -60.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609449211.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.210 kcal (2) G-P(sol) polarization free energy of solvation -63.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds