Wall clock time and date at job start Tue Mar 31 2020 05:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46959 * 90.00076 * 8 6 4 10 10 H 1.48491 * 109.47193 * 210.00468 * 8 6 4 11 11 H 1.48498 * 109.46715 * 330.00553 * 8 6 4 12 12 N 1.46899 * 109.47163 * 120.00030 * 2 1 3 13 13 C 1.46897 * 111.00133 * 275.00091 * 12 2 1 14 14 C 1.50705 * 109.47250 * 180.02562 * 13 12 2 15 15 C 1.38322 * 119.87209 * 269.72153 * 14 13 12 16 16 C 1.38024 * 120.11845 * 179.76461 * 15 14 13 17 17 C 1.39342 * 119.87233 * 0.50922 * 16 15 14 18 18 C 1.48394 * 120.11572 * 179.72488 * 17 16 15 19 19 C 1.39337 * 120.11798 * 179.74624 * 18 17 16 20 20 C 1.38016 * 119.87655 * 179.76484 * 19 18 17 21 21 C 1.38316 * 120.12229 * 0.51249 * 20 19 18 22 22 C 1.38325 * 120.24440 * 359.74068 * 21 20 19 23 23 C 1.38021 * 120.11982 * 359.97438 * 22 21 20 24 24 C 1.39337 * 119.76244 * 359.74473 * 17 16 15 25 25 C 1.38021 * 119.87534 * 0.02562 * 24 17 16 26 26 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 27 27 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 30 30 H 1.00901 * 110.99931 * 151.04418 * 12 2 1 31 31 H 1.09003 * 109.46826 * 299.99875 * 13 12 2 32 32 H 1.08993 * 109.47326 * 59.99934 * 13 12 2 33 33 H 1.08001 * 119.94362 * 0.02562 * 15 14 13 34 34 H 1.07999 * 120.06213 * 180.23580 * 16 15 14 35 35 H 1.08008 * 120.06345 * 0.02562 * 19 18 17 36 36 H 1.08006 * 119.94229 * 180.25023 * 20 19 18 37 37 H 1.08001 * 119.88173 * 179.72352 * 21 20 19 38 38 H 1.07994 * 119.94245 * 179.97438 * 22 21 20 39 39 H 1.07996 * 120.06642 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.05917 * 180.02562 * 24 17 16 41 41 H 1.08001 * 119.93369 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.3446 -2.1616 -4.4124 10 1 2.4871 -0.1403 -5.1120 11 1 3.6307 -1.7566 -3.7120 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5886 -0.5216 3.5557 15 6 1.6932 -1.1470 4.4045 16 6 2.1514 -1.8340 5.5104 17 6 3.5181 -1.8878 5.7769 18 6 4.0162 -2.6198 6.9677 19 6 5.3832 -2.6781 7.2313 20 6 5.8407 -3.3561 8.3430 21 6 4.9458 -3.9860 9.1889 22 6 3.5881 -3.9358 8.9291 23 6 3.1191 -3.2556 7.8235 24 6 4.4152 -1.2516 4.9214 25 6 3.9462 -0.5714 3.8157 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7093 1.1618 -3.4844 30 1 2.9174 -1.1205 1.0287 31 1 2.7589 1.0461 2.1182 32 1 1.0872 0.6162 2.5525 33 1 0.6339 -1.1012 4.1992 34 1 1.4518 -2.3252 6.1704 35 1 6.0832 -2.1900 6.5692 36 1 6.8998 -3.3986 8.5505 37 1 5.3084 -4.5193 10.0552 38 1 2.8937 -4.4297 9.5926 39 1 2.0589 -3.2173 7.6213 40 1 5.4754 -1.2905 5.1231 41 1 4.6406 -0.0775 3.1522 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609449212.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:22 Heat of formation + Delta-G solvation = 42.016949 kcal Electronic energy + Delta-G solvation = -20131.900671 eV Core-core repulsion = 17168.790283 eV Total energy + Delta-G solvation = -2963.110387 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.92650 -38.46799 -35.89385 -33.41626 -32.02668 -31.54449 -30.49203 -29.78333 -27.71141 -25.38360 -24.47487 -23.55170 -22.32140 -21.45538 -20.44832 -19.76446 -17.69582 -16.63470 -16.02305 -15.55273 -15.29389 -14.81380 -14.39668 -14.29984 -13.87482 -13.81352 -13.72201 -13.31579 -13.20449 -12.99295 -12.55528 -12.20424 -11.79404 -11.64125 -11.43633 -11.24768 -11.03978 -10.76183 -10.75546 -10.59410 -10.27137 -10.14466 -9.99886 -9.56896 -9.14162 -8.84670 -8.79369 -8.48882 -7.93032 -7.28456 -6.03790 -4.10319 0.65261 1.21669 1.56938 1.91705 3.29467 3.35754 3.38910 3.56636 4.09261 4.40019 4.53215 4.60551 4.76039 4.85214 5.05840 5.10845 5.17405 5.24875 5.25843 5.27453 5.53268 5.58405 5.68213 5.75828 5.82498 5.96555 6.02684 6.20496 6.22391 6.28158 6.31589 6.32231 6.55298 6.73465 6.80872 6.83844 6.92454 7.11897 7.13294 7.21411 7.48160 7.76949 7.87992 8.25910 8.36555 8.64516 8.99987 9.55690 11.02493 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.033279 B = 0.002769 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.178196 B =10108.063201 C =10453.783351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.211 3.789 3 H 0.001 0.999 4 C -0.518 4.518 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.682 5.682 13 C 0.093 3.907 14 C -0.058 4.058 15 C -0.099 4.099 16 C -0.109 4.109 17 C -0.065 4.065 18 C -0.032 4.032 19 C -0.116 4.116 20 C -0.118 4.118 21 C -0.128 4.128 22 C -0.118 4.118 23 C -0.115 4.115 24 C -0.108 4.108 25 C -0.115 4.115 26 H 0.004 0.996 27 H 0.081 0.919 28 H 0.031 0.969 29 H 0.261 0.739 30 H 0.332 0.668 31 H 0.029 0.971 32 H 0.073 0.927 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.501 -5.648 21.530 23.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.104 3.896 3 H 0.019 0.981 4 C -0.557 4.557 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.313 5.313 13 C -0.036 4.036 14 C -0.059 4.059 15 C -0.117 4.117 16 C -0.127 4.127 17 C -0.065 4.065 18 C -0.032 4.032 19 C -0.133 4.133 20 C -0.136 4.136 21 C -0.146 4.146 22 C -0.136 4.136 23 C -0.133 4.133 24 C -0.126 4.126 25 C -0.133 4.133 26 H 0.023 0.977 27 H 0.099 0.901 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.149 0.851 31 H 0.047 0.953 32 H 0.091 0.909 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.786 -5.757 21.528 23.023 hybrid contribution 1.045 0.066 -1.125 1.537 sum 6.831 -5.691 20.403 22.256 Atomic orbital electron populations 1.21721 0.97838 0.99382 0.99365 1.19136 0.92671 0.92348 0.85486 0.98106 1.21259 1.31495 1.12510 0.90418 0.92211 1.24921 0.95057 0.94986 0.99055 1.69896 1.36675 1.22834 1.23484 0.86512 0.79239 0.79321 0.82416 1.20597 1.21272 1.19928 1.60801 1.32246 1.32682 1.05583 1.20948 0.99987 0.93368 0.89343 1.20173 0.93089 0.96800 0.95804 1.21003 1.00021 0.96832 0.93864 1.21166 0.94382 0.99437 0.97739 1.18681 0.93504 0.99490 0.94812 1.18874 0.93226 0.96992 0.94139 1.21271 0.94843 0.99593 0.97640 1.21084 0.99668 0.97923 0.94929 1.21178 0.93494 1.00155 0.99756 1.21087 0.95694 0.99359 0.97450 1.21275 0.99712 0.97660 0.94667 1.21113 0.99000 0.97773 0.94745 1.21032 0.95309 0.99747 0.97249 0.97699 0.90071 0.94933 0.92910 0.85110 0.95285 0.90880 0.85665 0.86097 0.85712 0.86035 0.86242 0.86020 0.85672 0.86141 0.85998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.11 9.19 37.16 0.34 -2.77 16 2 C 0.21 5.35 2.60 -68.86 -0.18 5.17 16 3 H 0.00 0.04 7.80 -51.93 -0.40 -0.37 16 4 C -0.52 -14.27 8.59 -34.44 -0.30 -14.56 16 5 H 0.06 1.63 7.62 -52.48 -0.40 1.23 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.45 11.32 55.43 0.63 -24.82 16 8 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 N -0.68 -14.67 6.29 -109.22 -0.69 -15.35 16 13 C 0.09 1.68 5.61 -4.98 -0.03 1.65 16 14 C -0.06 -0.91 5.40 -104.56 -0.56 -1.48 16 15 C -0.10 -1.43 9.68 -39.63 -0.38 -1.81 16 16 C -0.11 -1.42 9.43 -39.25 -0.37 -1.79 16 17 C -0.06 -0.83 5.88 -104.90 -0.62 -1.45 16 18 C -0.03 -0.38 5.88 -104.90 -0.62 -0.99 16 19 C -0.12 -1.19 9.43 -39.25 -0.37 -1.56 16 20 C -0.12 -1.06 10.03 -39.63 -0.40 -1.45 16 21 C -0.13 -1.09 10.04 -39.52 -0.40 -1.49 16 22 C -0.12 -1.05 10.03 -39.63 -0.40 -1.45 16 23 C -0.12 -1.19 9.43 -39.25 -0.37 -1.56 16 24 C -0.11 -1.39 9.43 -39.25 -0.37 -1.76 16 25 C -0.11 -1.63 9.68 -39.63 -0.38 -2.02 16 26 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 27 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.33 7.06 8.22 -39.29 -0.32 6.74 16 31 H 0.03 0.53 8.00 -51.93 -0.42 0.11 16 32 H 0.07 1.33 7.37 -51.93 -0.38 0.94 16 33 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.12 1.28 6.21 -52.49 -0.33 0.96 16 35 H 0.13 1.12 6.21 -52.48 -0.33 0.79 16 36 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 37 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.13 1.12 6.21 -52.49 -0.33 0.80 16 40 H 0.12 1.27 6.21 -52.49 -0.33 0.94 16 41 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 338.20 15.07 5.10 5.10 Total: -1.00 -29.55 338.20 -11.08 -40.63 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.60 Total: 5.87 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: -5.49 Total: -27.71 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: -0.06 Total: -40.17 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.55 -11.08 -40.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609449212.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.645 kcal (2) G-P(sol) polarization free energy of solvation -29.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds