Wall clock time and date at job start Tue Mar 31 2020 05:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46959 * 90.00076 * 8 6 4 10 10 H 1.48491 * 109.47193 * 210.00468 * 8 6 4 11 11 H 1.48498 * 109.46715 * 330.00553 * 8 6 4 12 12 N 1.46899 * 109.47163 * 120.00030 * 2 1 3 13 13 C 1.46897 * 111.00133 * 275.00091 * 12 2 1 14 14 C 1.50705 * 109.47250 * 180.02562 * 13 12 2 15 15 C 1.38322 * 119.87209 * 269.72153 * 14 13 12 16 16 C 1.38024 * 120.11845 * 179.76461 * 15 14 13 17 17 C 1.39342 * 119.87233 * 0.50922 * 16 15 14 18 18 C 1.48394 * 120.11572 * 179.72488 * 17 16 15 19 19 C 1.39337 * 120.11798 * 179.74624 * 18 17 16 20 20 C 1.38016 * 119.87655 * 179.76484 * 19 18 17 21 21 C 1.38316 * 120.12229 * 0.51249 * 20 19 18 22 22 C 1.38325 * 120.24440 * 359.74068 * 21 20 19 23 23 C 1.38021 * 120.11982 * 359.97438 * 22 21 20 24 24 C 1.39337 * 119.76244 * 359.74473 * 17 16 15 25 25 C 1.38021 * 119.87534 * 0.02562 * 24 17 16 26 26 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 27 27 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 30 30 H 1.00901 * 110.99931 * 151.04418 * 12 2 1 31 31 H 1.09003 * 109.46826 * 299.99875 * 13 12 2 32 32 H 1.08993 * 109.47326 * 59.99934 * 13 12 2 33 33 H 1.08001 * 119.94362 * 0.02562 * 15 14 13 34 34 H 1.07999 * 120.06213 * 180.23580 * 16 15 14 35 35 H 1.08008 * 120.06345 * 0.02562 * 19 18 17 36 36 H 1.08006 * 119.94229 * 180.25023 * 20 19 18 37 37 H 1.08001 * 119.88173 * 179.72352 * 21 20 19 38 38 H 1.07994 * 119.94245 * 179.97438 * 22 21 20 39 39 H 1.07996 * 120.06642 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.05917 * 180.02562 * 24 17 16 41 41 H 1.08001 * 119.93369 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.3446 -2.1616 -4.4124 10 1 2.4871 -0.1403 -5.1120 11 1 3.6307 -1.7566 -3.7120 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5886 -0.5216 3.5557 15 6 1.6932 -1.1470 4.4045 16 6 2.1514 -1.8340 5.5104 17 6 3.5181 -1.8878 5.7769 18 6 4.0162 -2.6198 6.9677 19 6 5.3832 -2.6781 7.2313 20 6 5.8407 -3.3561 8.3430 21 6 4.9458 -3.9860 9.1889 22 6 3.5881 -3.9358 8.9291 23 6 3.1191 -3.2556 7.8235 24 6 4.4152 -1.2516 4.9214 25 6 3.9462 -0.5714 3.8157 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7093 1.1618 -3.4844 30 1 2.9174 -1.1205 1.0287 31 1 2.7589 1.0461 2.1182 32 1 1.0872 0.6162 2.5525 33 1 0.6339 -1.1012 4.1992 34 1 1.4518 -2.3252 6.1704 35 1 6.0832 -2.1900 6.5692 36 1 6.8998 -3.3986 8.5505 37 1 5.3084 -4.5193 10.0552 38 1 2.8937 -4.4297 9.5926 39 1 2.0589 -3.2173 7.6213 40 1 5.4754 -1.2905 5.1231 41 1 4.6406 -0.0775 3.1522 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609449212.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:22 Heat of formation + Delta-G solvation = 27.472058 kcal Electronic energy + Delta-G solvation = -20132.531384 eV Core-core repulsion = 17168.790283 eV Total energy + Delta-G solvation = -2963.741101 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.83442 -39.39916 -37.60674 -34.97074 -33.49947 -32.39121 -31.37785 -31.17569 -29.17230 -27.38335 -25.88433 -24.42165 -23.36792 -22.32840 -21.78664 -21.40686 -18.77375 -18.32081 -17.01502 -16.82127 -16.52946 -16.32563 -15.64775 -15.48047 -15.14691 -15.02825 -14.71742 -14.64198 -14.20243 -14.04048 -13.91000 -13.49534 -13.29451 -13.09718 -12.88027 -12.65834 -12.50632 -12.28995 -12.20288 -12.14894 -12.00370 -11.66152 -11.50540 -10.92593 -10.60127 -10.49767 -9.85732 -9.82566 -9.12049 -8.84276 -8.14516 -6.29022 -0.23739 0.50826 0.52909 0.99226 1.41730 1.42729 1.52950 2.40603 2.69573 3.13595 3.16137 3.64267 3.74701 3.81287 4.00638 4.03917 4.15252 4.17744 4.35175 4.38306 4.51536 4.58393 4.59258 4.71817 4.81389 4.87218 4.94394 5.06329 5.09912 5.13776 5.19652 5.22834 5.37981 5.41181 5.46049 5.62540 5.63352 5.64865 5.75868 5.83243 5.84353 6.05485 6.12817 6.20804 6.44051 6.73546 6.96432 7.41353 8.91055 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.033279 B = 0.002769 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.178196 B =10108.063201 C =10453.783351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.215 3.785 3 H -0.029 1.029 4 C -0.539 4.539 5 H 0.058 0.942 6 C 0.013 3.987 7 N -0.917 5.917 8 Si 0.964 3.036 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.268 1.268 12 N -0.680 5.680 13 C 0.100 3.900 14 C -0.081 4.081 15 C -0.107 4.107 16 C -0.113 4.113 17 C -0.060 4.060 18 C -0.060 4.060 19 C -0.126 4.126 20 C -0.124 4.124 21 C -0.126 4.126 22 C -0.124 4.124 23 C -0.125 4.125 24 C -0.113 4.113 25 C -0.120 4.120 26 H 0.023 0.977 27 H 0.058 0.942 28 H 0.027 0.973 29 H 0.263 0.737 30 H 0.332 0.668 31 H 0.024 0.976 32 H 0.069 0.931 33 H 0.127 0.873 34 H 0.143 0.857 35 H 0.133 0.867 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.133 0.867 40 H 0.143 0.857 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.638 -7.281 23.286 25.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.107 3.893 3 H -0.012 1.012 4 C -0.577 4.577 5 H 0.076 0.924 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.789 3.211 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.192 1.192 12 N -0.310 5.310 13 C -0.029 4.029 14 C -0.081 4.081 15 C -0.125 4.125 16 C -0.131 4.131 17 C -0.061 4.061 18 C -0.060 4.060 19 C -0.143 4.143 20 C -0.142 4.142 21 C -0.144 4.144 22 C -0.142 4.142 23 C -0.143 4.143 24 C -0.130 4.130 25 C -0.139 4.139 26 H 0.042 0.958 27 H 0.076 0.924 28 H 0.046 0.954 29 H 0.072 0.928 30 H 0.149 0.851 31 H 0.042 0.958 32 H 0.087 0.913 33 H 0.145 0.855 34 H 0.161 0.839 35 H 0.151 0.849 36 H 0.162 0.838 37 H 0.163 0.837 38 H 0.162 0.838 39 H 0.151 0.849 40 H 0.161 0.839 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.926 -7.392 23.304 25.411 hybrid contribution 0.739 0.530 -1.487 1.743 sum 7.666 -6.863 21.817 24.121 Atomic orbital electron populations 1.21549 0.97629 0.98883 0.99143 1.18947 0.92834 0.90818 0.86735 1.01157 1.21572 1.31801 1.12698 0.91620 0.92388 1.25740 0.95161 0.95669 1.02052 1.70020 1.37434 1.23970 1.24237 0.85474 0.78861 0.78200 0.78593 1.20124 1.20772 1.19208 1.60711 1.32269 1.33021 1.05032 1.20870 0.99846 0.93029 0.89195 1.19961 0.94057 0.98555 0.95562 1.21090 0.99999 0.97078 0.94346 1.21395 0.95092 0.99145 0.97481 1.18970 0.93509 0.98546 0.95035 1.18948 0.94192 0.98467 0.94380 1.21488 0.94561 0.99884 0.98415 1.21413 1.01091 0.97337 0.94385 1.21582 0.93346 0.99309 1.00175 1.21417 0.96550 0.98982 0.97255 1.21492 1.00121 0.97699 0.95013 1.21356 1.00303 0.97241 0.94120 1.21131 0.94791 1.00018 0.97933 0.95806 0.92354 0.95365 0.92768 0.85109 0.95769 0.91277 0.85541 0.83924 0.84921 0.83799 0.83683 0.83779 0.84897 0.83932 0.85595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.79 9.19 71.98 0.66 -5.12 16 2 C 0.21 11.20 2.60 44.17 0.11 11.32 16 3 H -0.03 -1.66 7.80 -2.39 -0.02 -1.68 16 4 C -0.54 -30.10 8.59 25.60 0.22 -29.88 16 5 H 0.06 3.19 7.62 -2.91 -0.02 3.16 16 6 C 0.01 0.73 5.30 84.66 0.45 1.18 16 7 N -0.92 -53.29 11.32 21.45 0.24 -53.04 16 8 Si 0.96 43.83 29.54 68.60 2.03 45.85 16 9 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 12 N -0.68 -29.85 6.29 -499.46 -3.14 -32.99 16 13 C 0.10 3.70 5.61 85.56 0.48 4.18 16 14 C -0.08 -2.56 5.40 -19.82 -0.11 -2.67 16 15 C -0.11 -3.07 9.68 22.24 0.22 -2.86 16 16 C -0.11 -2.83 9.43 22.48 0.21 -2.62 16 17 C -0.06 -1.49 5.88 -20.04 -0.12 -1.61 16 18 C -0.06 -1.29 5.88 -20.04 -0.12 -1.41 16 19 C -0.13 -2.34 9.43 22.48 0.21 -2.13 16 20 C -0.12 -1.88 10.03 22.24 0.22 -1.65 16 21 C -0.13 -1.75 10.04 22.31 0.22 -1.52 16 22 C -0.12 -1.87 10.03 22.24 0.22 -1.65 16 23 C -0.13 -2.34 9.43 22.48 0.21 -2.13 16 24 C -0.11 -2.78 9.43 22.48 0.21 -2.57 16 25 C -0.12 -3.40 9.68 22.24 0.22 -3.19 16 26 H 0.02 1.07 7.45 -2.39 -0.02 1.05 16 27 H 0.06 3.23 6.07 -2.39 -0.01 3.22 16 28 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.26 14.46 8.31 -92.70 -0.77 13.69 16 30 H 0.33 14.42 8.22 -89.69 -0.74 13.69 16 31 H 0.02 0.91 8.00 -2.39 -0.02 0.89 16 32 H 0.07 2.58 7.37 -2.39 -0.02 2.56 16 33 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 34 H 0.14 2.81 6.21 -2.91 -0.02 2.80 16 35 H 0.13 2.12 6.21 -2.91 -0.02 2.10 16 36 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 37 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 38 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 39 H 0.13 2.13 6.21 -2.91 -0.02 2.11 16 40 H 0.14 2.78 6.21 -2.91 -0.02 2.76 16 41 H 0.13 3.35 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -63.37 338.20 2.95 -60.41 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.29 Total: 24.10 kcal Atomic # 6 Polarization: -47.86 SS G_CDS: 3.53 Total: -44.33 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -2.90 Total: -86.03 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -63.37 2.95 -60.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609449212.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.886 kcal (2) G-P(sol) polarization free energy of solvation -63.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds