Wall clock time and date at job start Tue Mar 31 2020 05:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.46685 * 2 1 4 4 N 1.30835 * 125.95915 * 265.00044 * 3 2 1 5 5 C 1.33244 * 109.82681 * 179.97438 * 4 3 2 6 6 C 1.50707 * 125.52397 * 180.02562 * 5 4 3 7 7 H 1.09004 * 109.46786 * 15.00326 * 6 5 4 8 8 C 1.52992 * 109.47124 * 254.99765 * 6 5 4 9 9 N 1.46499 * 109.46606 * 134.99976 * 6 5 4 10 10 C 1.34776 * 119.99806 * 205.00010 * 9 6 5 11 11 O 1.21589 * 119.99982 * 0.02562 * 10 9 6 12 12 N 1.34770 * 120.00346 * 180.02562 * 10 9 6 13 13 C 1.46499 * 120.00716 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.47467 * 179.97438 * 13 12 10 15 15 C 1.50703 * 109.46977 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00383 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99923 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00011 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99845 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47266 * 90.00275 * 19 17 15 21 21 H 1.48502 * 109.47125 * 210.00202 * 19 17 15 22 22 H 1.48498 * 109.47211 * 330.00238 * 19 17 15 23 23 N 1.30712 * 108.94650 * 0.02562 * 5 4 3 24 24 N 1.34424 * 125.96453 * 84.98060 * 3 2 1 25 25 H 0.97005 * 126.82354 * 0.02562 * 24 3 2 26 26 H 1.09003 * 109.46746 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47135 * 299.99660 * 1 2 3 28 28 H 1.08993 * 109.47605 * 60.00144 * 1 2 3 29 29 H 1.09001 * 109.46864 * 239.99972 * 2 1 3 30 30 H 1.09001 * 109.47361 * 119.99696 * 2 1 3 31 31 H 1.08998 * 109.47625 * 300.00424 * 8 6 5 32 32 H 1.09001 * 109.47141 * 60.00572 * 8 6 5 33 33 H 1.09002 * 109.47017 * 180.02562 * 8 6 5 34 34 H 0.96997 * 120.00473 * 24.99662 * 9 6 5 35 35 H 0.97009 * 120.00103 * 359.97438 * 12 10 9 36 36 H 1.09003 * 109.46769 * 300.00566 * 13 12 10 37 37 H 1.08998 * 109.46875 * 59.99517 * 13 12 10 38 38 H 1.08998 * 109.47593 * 299.99646 * 14 13 12 39 39 H 1.08993 * 109.47333 * 60.00382 * 14 13 12 40 40 H 0.97002 * 119.99635 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3753 2.1144 -1.0550 5 6 2.7709 3.3322 -0.6862 6 6 3.2410 4.4197 -1.6177 7 1 2.9633 4.1668 -2.6409 8 6 4.7620 4.5527 -1.5200 9 7 2.6146 5.6894 -1.2413 10 6 2.4590 6.6626 -2.1606 11 8 2.8381 6.4867 -3.3023 12 7 1.8832 7.8309 -1.8143 13 6 1.7146 8.8891 -2.8133 14 6 1.0395 10.0995 -2.1653 15 6 0.8667 11.1882 -3.1929 16 1 1.2041 11.0322 -4.2069 17 6 0.2767 12.3830 -2.8388 18 7 -0.1347 12.5728 -1.6041 19 14 0.0618 13.7322 -4.1127 20 1 -1.2504 13.5703 -4.7887 21 1 0.1141 15.0572 -3.4442 22 1 1.1510 13.6418 -5.1181 23 7 2.6852 3.4305 0.6144 24 7 2.2056 2.1969 1.0838 25 1 2.0338 1.9532 2.0069 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 5.0397 4.8056 -0.4967 32 1 5.2281 3.6080 -1.8000 33 1 5.1019 5.3396 -2.1933 34 1 2.3117 5.8296 -0.3306 35 1 1.5803 7.9712 -0.9034 36 1 2.6904 9.1812 -3.2013 37 1 1.0939 8.5216 -3.6305 38 1 0.0637 9.8071 -1.7777 39 1 1.6598 10.4671 -1.3480 40 1 -0.5494 13.4136 -1.3550 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612380065.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:48 Heat of formation + Delta-G solvation = 34.494899 kcal Electronic energy + Delta-G solvation = -21114.314485 eV Core-core repulsion = 17772.321406 eV Total energy + Delta-G solvation = -3341.993080 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.54433 -39.59272 -36.15805 -34.71839 -34.25432 -32.92359 -32.66507 -30.96730 -29.89835 -28.92321 -25.00370 -24.86573 -24.13394 -21.51109 -20.98402 -20.55197 -20.18596 -18.53020 -17.69297 -16.41034 -16.12320 -16.05880 -15.12268 -15.04441 -14.74570 -14.51555 -14.26931 -13.95556 -13.56052 -13.31484 -13.11598 -12.68693 -12.58650 -12.26207 -12.11063 -12.06585 -11.63726 -11.46663 -11.14297 -10.99752 -10.59622 -10.43702 -10.35517 -10.26783 -9.93784 -9.82441 -9.50948 -9.21850 -9.04406 -8.44985 -8.20739 -6.05459 -4.07824 1.21762 2.24271 2.43332 3.05297 3.32643 3.38557 3.43319 3.55725 3.67467 4.16708 4.30491 4.43299 4.62352 4.68169 4.78824 4.95758 5.17993 5.24506 5.26939 5.31674 5.41465 5.59524 5.65362 5.83742 5.88761 6.00485 6.21208 6.35302 6.45801 6.58443 6.68323 6.83328 7.05780 7.28796 7.61842 7.68488 7.75737 7.94166 8.30282 8.48055 8.97080 9.04273 9.56687 11.06285 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.030743 B = 0.002625 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.547488 B =10664.530102 C =11019.304899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.046 4.046 3 C 0.286 3.714 4 N -0.528 5.528 5 C 0.228 3.772 6 C 0.259 3.741 7 H 0.115 0.885 8 C -0.156 4.156 9 N -0.746 5.746 10 C 0.703 3.297 11 O -0.595 6.595 12 N -0.737 5.737 13 C 0.140 3.860 14 C 0.012 3.988 15 C -0.519 4.519 16 H 0.060 0.940 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.897 3.103 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.272 1.272 23 N -0.305 5.305 24 N -0.481 5.481 25 H 0.440 0.560 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.398 0.602 35 H 0.393 0.607 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.068 -26.352 8.696 28.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.086 4.086 3 C 0.007 3.993 4 N -0.256 5.256 5 C -0.055 4.055 6 C 0.150 3.850 7 H 0.133 0.867 8 C -0.216 4.216 9 N -0.404 5.404 10 C 0.403 3.597 11 O -0.473 6.473 12 N -0.390 5.390 13 C 0.018 3.982 14 C -0.025 4.025 15 C -0.558 4.558 16 H 0.078 0.922 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.725 3.275 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 N -0.134 5.134 24 N -0.199 5.199 25 H 0.286 0.714 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.123 0.877 30 H 0.107 0.893 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.232 0.768 35 H 0.226 0.774 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.040 0.960 39 H 0.041 0.959 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.529 -25.778 7.726 27.289 hybrid contribution -0.679 0.598 1.092 1.418 sum 3.850 -25.180 8.818 26.955 Atomic orbital electron populations 1.21770 0.93004 1.03067 1.03029 1.20214 0.97035 0.86143 1.05242 1.24440 0.95698 0.96270 0.82853 1.70362 1.21335 1.04553 1.29370 1.24325 0.97343 0.93721 0.90143 1.18782 0.92573 0.77618 0.95993 0.86685 1.22177 0.93414 1.03008 1.03004 1.45113 1.67188 1.14738 1.13332 1.15962 0.78999 0.80401 0.84374 1.90892 1.56702 1.81055 1.18691 1.45524 1.63949 1.14600 1.14969 1.21599 1.00337 0.86286 0.90010 1.19328 0.95779 0.90698 0.96712 1.21063 1.39518 0.98815 0.96409 0.92178 1.25002 0.95367 0.98563 0.95439 1.69963 1.40704 1.25402 1.17358 0.86507 0.78634 0.80979 0.81398 1.20587 1.21224 1.19699 1.77964 1.22156 1.00929 1.12320 1.47975 1.51391 1.10044 1.10448 0.71431 0.90856 0.92527 0.91437 0.87659 0.89298 0.92091 0.91518 0.90332 0.76781 0.77370 0.92675 0.92733 0.96002 0.95946 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.89 37.16 0.37 -0.27 16 2 C -0.05 -0.21 6.56 -27.88 -0.18 -0.39 16 3 C 0.29 2.50 7.49 -155.70 -1.17 1.33 16 4 N -0.53 -6.49 11.19 -8.16 -0.09 -6.58 16 5 C 0.23 2.94 6.95 -156.85 -1.09 1.85 16 6 C 0.26 3.54 3.12 -69.08 -0.22 3.33 16 7 H 0.12 1.75 7.58 -51.93 -0.39 1.36 16 8 C -0.16 -1.90 9.47 37.15 0.35 -1.55 16 9 N -0.75 -10.90 5.07 -59.81 -0.30 -11.21 16 10 C 0.70 12.95 8.53 -86.92 -0.74 12.21 16 11 O -0.59 -13.00 16.01 5.29 0.08 -12.91 16 12 N -0.74 -13.70 5.56 -65.23 -0.36 -14.06 16 13 C 0.14 3.10 5.61 -4.05 -0.02 3.08 16 14 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 15 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 16 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -26.52 13.29 55.43 0.74 -25.79 16 19 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 N -0.30 -3.59 12.46 32.42 0.40 -3.19 16 24 N -0.48 -3.99 7.45 32.62 0.24 -3.74 16 25 H 0.44 2.00 8.96 -182.33 -1.63 0.37 16 26 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.40 5.17 8.34 -40.82 -0.34 4.83 16 35 H 0.39 6.41 8.49 -40.82 -0.35 6.06 16 36 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 346.27 15.07 5.22 5.22 Total: -1.00 -34.98 346.27 -9.67 -44.65 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -7.33 Total: 4.59 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -3.25 Total: 6.36 kcal Atomic # 7 Polarization: -65.19 SS G_CDS: 0.63 Total: -64.56 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.08 Total: -12.91 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.98 -9.67 -44.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612380065.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.146 kcal (2) G-P(sol) polarization free energy of solvation -34.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds