Wall clock time and date at job start Tue Mar 31 2020 05:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35951 * 117.00129 * 2 1 4 4 C 1.38778 * 120.02790 * 359.97438 * 3 2 1 5 5 C 1.38184 * 120.10618 * 179.97438 * 4 3 2 6 6 C 1.38187 * 120.15253 * 359.76923 * 5 4 3 7 7 C 1.38870 * 120.04899 * 0.50888 * 6 5 4 8 8 N 1.39853 * 120.05026 * 179.74254 * 7 6 5 9 9 C 1.46496 * 119.99941 * 359.72563 * 8 7 6 10 10 C 1.53006 * 109.46995 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.46626 * 299.99666 * 10 9 8 12 12 C 1.52997 * 109.47164 * 59.99963 * 10 9 8 13 13 C 1.52997 * 109.47127 * 180.02562 * 10 9 8 14 14 C 1.50696 * 109.47055 * 179.97438 * 13 10 9 15 15 H 1.08000 * 120.00290 * 0.02562 * 14 13 10 16 16 C 1.37887 * 120.00079 * 179.97438 * 14 13 10 17 17 N 1.31516 * 119.99685 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00129 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46879 * 60.00177 * 18 16 14 20 20 H 1.48494 * 109.47196 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47151 * 300.00589 * 18 16 14 22 22 C 1.38706 * 120.02659 * 179.97438 * 3 2 1 23 23 F 1.35102 * 120.07328 * 359.95596 * 22 3 2 24 24 H 1.09000 * 109.47158 * 300.00114 * 1 2 3 25 25 H 1.08997 * 109.46704 * 60.00424 * 1 2 3 26 26 H 1.09004 * 109.47213 * 180.02562 * 1 2 3 27 27 H 1.08002 * 119.94508 * 0.02678 * 4 3 2 28 28 H 1.08001 * 119.92218 * 180.02562 * 5 4 3 29 29 H 1.08004 * 119.97643 * 180.27225 * 6 5 4 30 30 H 0.96998 * 119.99867 * 179.72888 * 8 7 6 31 31 H 1.09001 * 109.47464 * 60.00491 * 9 8 7 32 32 H 1.09001 * 109.47459 * 300.00207 * 9 8 7 33 33 H 1.09000 * 109.47160 * 60.00369 * 11 10 9 34 34 H 1.09002 * 109.46719 * 180.02562 * 11 10 9 35 35 H 1.08993 * 109.47839 * 299.99931 * 11 10 9 36 36 H 1.09001 * 109.47375 * 59.99966 * 12 10 9 37 37 H 1.09002 * 109.46777 * 180.02562 * 12 10 9 38 38 H 1.09000 * 109.47140 * 299.99948 * 12 10 9 39 39 H 1.09001 * 109.47289 * 299.99953 * 13 10 9 40 40 H 1.09004 * 109.47261 * 59.99697 * 13 10 9 41 41 H 0.96999 * 119.99910 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2910 2.3756 -0.0005 5 6 1.9167 3.6077 0.0000 6 6 3.2964 3.6855 0.0059 7 6 4.0584 2.5246 0.0006 8 7 5.4547 2.6034 0.0011 9 6 6.1145 3.9113 0.0012 10 6 7.6322 3.7169 0.0011 11 6 8.0463 2.9367 1.2504 12 6 8.0464 2.9368 -1.2481 13 6 8.3213 5.0829 0.0018 14 6 9.8161 4.8914 0.0024 15 1 10.2329 3.8951 0.0019 16 6 10.6517 5.9882 0.0025 17 7 10.1441 7.2015 0.0026 18 14 12.5045 5.7509 0.0025 19 1 12.9065 4.9938 -1.2101 20 1 13.1734 7.0766 0.0033 21 1 12.9065 4.9933 1.2149 22 6 3.4314 1.2845 0.0005 23 9 4.1691 0.1527 0.0020 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.2125 2.3186 -0.0005 28 1 1.3260 4.5118 0.0000 29 1 3.7824 4.6500 0.0107 30 1 5.9862 1.7920 0.0014 31 1 5.8192 4.4673 0.8910 32 1 5.8197 4.4671 -0.8890 33 1 7.5553 1.9635 1.2504 34 1 9.1275 2.7986 1.2506 35 1 7.7513 3.4925 2.1404 36 1 7.7513 3.4926 -2.1381 37 1 9.1275 2.7979 -1.2479 38 1 7.5554 1.9636 -1.2482 39 1 8.0263 5.6392 -0.8879 40 1 8.0261 5.6383 0.8920 41 1 10.7319 7.9731 0.0031 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690034952.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:39 Heat of formation + Delta-G solvation = -89.108529 kcal Electronic energy + Delta-G solvation = -21950.168790 eV Core-core repulsion = 18550.603151 eV Total energy + Delta-G solvation = -3399.565639 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.66084 -40.94091 -39.69321 -38.22162 -35.47066 -34.12868 -31.24991 -30.11899 -28.80024 -28.29989 -28.00981 -27.02893 -24.80474 -23.54617 -22.41035 -19.90125 -19.31094 -18.39345 -18.17328 -17.80961 -17.10407 -16.91075 -16.42416 -16.04107 -15.85433 -15.67967 -15.41681 -15.30268 -14.71244 -14.36329 -14.28887 -13.96271 -13.70499 -13.32473 -13.22532 -12.88529 -12.76464 -12.68015 -12.44681 -12.35306 -12.19744 -12.12290 -12.07703 -11.97538 -11.55321 -11.00646 -10.88253 -10.86519 -10.49969 -9.21059 -8.42795 -8.14446 -6.20980 0.30847 0.49801 1.42017 1.43083 1.50435 2.04760 2.43495 2.64071 2.73290 3.20111 3.38037 3.93067 3.98004 4.02144 4.08294 4.17291 4.29929 4.43465 4.44664 4.48905 4.65303 4.71684 4.72824 4.76448 4.93536 5.00861 5.08335 5.08722 5.15338 5.26148 5.39828 5.46783 5.48231 5.51919 5.54840 5.58517 5.79328 5.89671 6.18687 6.34334 6.40670 6.66675 6.93022 7.46162 8.97511 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.041276 B = 0.003276 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.191265 B = 8543.807782 C = 9020.328880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.132 3.868 4 C -0.243 4.243 5 C -0.030 4.030 6 C -0.223 4.223 7 C 0.219 3.781 8 N -0.731 5.731 9 C 0.146 3.854 10 C -0.065 4.065 11 C -0.121 4.121 12 C -0.121 4.121 13 C 0.044 3.956 14 C -0.518 4.518 15 H 0.065 0.935 16 C 0.000 4.000 17 N -0.934 5.934 18 Si 0.953 3.047 19 H -0.270 1.270 20 H -0.288 1.288 21 H -0.270 1.270 22 C -0.055 4.055 23 F -0.154 7.154 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.117 0.883 27 H 0.163 0.837 28 H 0.163 0.837 29 H 0.136 0.864 30 H 0.402 0.598 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.051 0.949 38 H 0.054 0.946 39 H -0.007 1.007 40 H -0.007 1.007 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.202 -10.718 -0.006 22.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.085 3.915 4 C -0.263 4.263 5 C -0.049 4.049 6 C -0.246 4.246 7 C 0.112 3.888 8 N -0.359 5.359 9 C 0.023 3.977 10 C -0.066 4.066 11 C -0.178 4.178 12 C -0.178 4.178 13 C 0.007 3.993 14 C -0.556 4.556 15 H 0.083 0.917 16 C -0.197 4.197 17 N -0.575 5.575 18 Si 0.779 3.221 19 H -0.195 1.195 20 H -0.214 1.214 21 H -0.195 1.195 22 C -0.080 4.080 23 F -0.134 7.134 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.135 0.865 27 H 0.180 0.820 28 H 0.180 0.820 29 H 0.154 0.846 30 H 0.239 0.761 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.012 0.988 40 H 0.012 0.988 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -19.942 -10.588 -0.006 22.578 hybrid contribution 1.459 -0.090 -0.001 1.462 sum -18.483 -10.678 -0.007 21.345 Atomic orbital electron populations 1.23421 0.75622 1.05673 1.02858 1.86076 1.24216 1.26302 1.88444 1.18862 0.89759 0.86409 0.96439 1.21180 1.01181 0.90461 1.13506 1.21113 0.93090 0.98332 0.92333 1.20770 0.94701 0.96356 1.12786 1.17803 0.84816 0.92115 0.94072 1.44842 1.01935 1.08876 1.80246 1.21360 0.91811 0.83802 1.00765 1.20695 0.92322 0.97396 0.96173 1.21672 1.01300 0.98462 0.96406 1.21671 1.01298 0.98461 0.96405 1.18930 0.94475 0.91049 0.94872 1.21559 0.92433 0.92599 1.48994 0.91678 1.25848 1.03260 0.95140 0.95470 1.70079 1.36580 0.98440 1.52426 0.85681 0.80378 0.77111 0.78970 1.19465 1.21362 1.19473 1.16590 0.87172 0.81212 1.23034 1.91362 1.76931 1.49412 1.95673 0.91066 0.91058 0.86473 0.81988 0.81985 0.84646 0.76150 0.92297 0.92306 0.92676 0.92951 0.93875 0.93868 0.92953 0.92677 0.98849 0.98847 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -7.93 10.36 -93.00 -0.96 -8.90 16 3 C 0.13 3.34 6.69 22.51 0.15 3.49 16 4 C -0.24 -4.59 9.04 22.39 0.20 -4.39 16 5 C -0.03 -0.57 10.03 22.24 0.22 -0.35 16 6 C -0.22 -5.51 9.31 22.41 0.21 -5.31 16 7 C 0.22 6.35 6.66 38.18 0.25 6.60 16 8 N -0.73 -22.08 5.14 -339.25 -1.74 -23.82 16 9 C 0.15 4.81 3.80 86.38 0.33 5.14 16 10 C -0.07 -2.49 0.54 -52.18 -0.03 -2.52 16 11 C -0.12 -4.37 8.05 71.98 0.58 -3.79 16 12 C -0.12 -4.37 8.05 71.98 0.58 -3.79 16 13 C 0.04 2.19 4.04 29.85 0.12 2.31 16 14 C -0.52 -27.75 7.65 25.60 0.20 -27.55 16 15 H 0.07 3.35 5.68 -2.91 -0.02 3.33 16 16 C 0.00 0.01 5.46 84.66 0.46 0.47 16 17 N -0.93 -55.64 13.29 21.45 0.28 -55.36 16 18 Si 0.95 43.67 29.54 68.60 2.03 45.69 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 22 C -0.06 -1.67 7.32 22.55 0.17 -1.50 16 23 F -0.15 -5.10 16.48 44.97 0.74 -4.36 16 24 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 25 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 26 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.16 1.92 6.29 -2.91 -0.02 1.91 16 28 H 0.16 1.95 8.06 -2.91 -0.02 1.92 16 29 H 0.14 3.26 6.73 -2.91 -0.02 3.24 16 30 H 0.40 12.12 5.65 -92.71 -0.52 11.60 16 31 H 0.06 1.94 7.94 -2.39 -0.02 1.92 16 32 H 0.06 1.94 7.96 -2.39 -0.02 1.92 16 33 H 0.05 1.71 6.86 -2.39 -0.02 1.69 16 34 H 0.05 2.03 6.62 -2.39 -0.02 2.01 16 35 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.05 2.02 6.62 -2.39 -0.02 2.01 16 38 H 0.05 1.70 6.86 -2.39 -0.02 1.69 16 39 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 40 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 41 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -65.11 332.17 5.41 -59.69 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.51 Total: 16.89 kcal Atomic # 6 Polarization: -34.39 SS G_CDS: 4.55 Total: -29.84 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -1.46 Total: -79.18 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: -0.96 Total: -8.90 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.74 Total: -4.36 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -65.11 5.41 -59.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690034952.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.416 kcal (2) G-P(sol) polarization free energy of solvation -65.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds