Wall clock time and date at job start Tue Mar 31 2020 05:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33391 * 125.19875 * 2 1 4 4 C 1.38429 * 114.91755 * 179.97438 * 3 2 1 5 5 C 1.50701 * 122.53958 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.46869 * 260.02893 * 5 4 3 7 7 C 1.46899 * 111.00013 * 190.00054 * 6 5 4 8 8 C 1.50701 * 109.47308 * 155.65527 * 7 6 5 9 9 H 1.07999 * 120.00115 * 2.96372 * 8 7 6 10 10 C 1.37878 * 119.99977 * 182.96217 * 8 7 6 11 11 N 1.31514 * 120.00116 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00006 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47327 * 90.00230 * 12 10 8 14 14 H 1.48503 * 109.46877 * 210.00085 * 12 10 8 15 15 H 1.48504 * 109.47320 * 329.99765 * 12 10 8 16 16 C 1.46898 * 111.00663 * 66.04210 * 6 5 4 17 17 C 1.52997 * 109.47290 * 197.41705 * 16 6 5 18 18 C 1.53006 * 109.47248 * 60.95836 * 17 16 6 19 19 C 1.53004 * 109.47246 * 180.95597 * 17 16 6 20 20 C 1.33383 * 114.92310 * 0.25077 * 4 3 2 21 21 C 1.50700 * 125.20443 * 179.75626 * 20 4 3 22 22 S 1.75882 * 125.20602 * 179.97438 * 2 1 3 23 23 H 1.08994 * 109.47548 * 89.99723 * 1 2 3 24 24 H 1.09008 * 109.46841 * 209.99715 * 1 2 3 25 25 H 1.08996 * 109.47099 * 329.99002 * 1 2 3 26 26 H 1.07994 * 122.54448 * 359.97438 * 3 2 1 27 27 H 1.09003 * 109.46994 * 20.02228 * 5 4 3 28 28 H 1.08990 * 109.47706 * 140.02569 * 5 4 3 29 29 H 1.09006 * 109.46881 * 275.65743 * 7 6 5 30 30 H 1.08994 * 109.47363 * 35.65307 * 7 6 5 31 31 H 0.96997 * 120.00540 * 180.02562 * 11 10 8 32 32 H 1.09006 * 109.46699 * 317.41663 * 16 6 5 33 33 H 1.09001 * 109.46944 * 77.41646 * 16 6 5 34 34 H 1.09001 * 109.47510 * 300.95572 * 17 16 6 35 35 H 1.09001 * 109.47081 * 59.99473 * 18 17 16 36 36 H 1.08993 * 109.47453 * 179.97438 * 18 17 16 37 37 H 1.09001 * 109.46824 * 300.00156 * 18 17 16 38 38 H 1.08993 * 109.46750 * 59.99828 * 19 17 16 39 39 H 1.08993 * 109.47330 * 180.02562 * 19 17 16 40 40 H 1.09001 * 109.46846 * 300.00381 * 19 17 16 41 41 H 1.09003 * 109.47415 * 90.00341 * 21 20 4 42 42 H 1.09010 * 109.47024 * 209.99925 * 21 20 4 43 43 H 1.08998 * 109.47035 * 329.99843 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2758 1.0900 0.0000 4 6 3.6379 0.8430 0.0006 5 6 4.6622 1.9483 0.0001 6 7 5.1713 2.1435 -1.3640 7 6 6.3340 3.0413 -1.3686 8 6 7.1746 2.7684 -2.5892 9 1 6.8505 2.0382 -3.3159 10 6 8.3575 3.4511 -2.7783 11 7 8.7524 4.3401 -1.8932 12 14 9.3991 3.1135 -4.2917 13 1 8.9866 4.0240 -5.3898 14 1 10.8303 3.3438 -3.9690 15 1 9.2088 1.7041 -4.7193 16 6 4.1153 2.6452 -2.2534 17 6 4.5300 2.4289 -3.7101 18 6 4.7199 0.9331 -3.9698 19 6 3.4408 2.9731 -4.6367 20 6 3.9751 -0.4476 -0.0043 21 6 5.3861 -0.9768 -0.0100 22 16 2.5210 -1.4371 0.0006 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3633 0.8899 0.5140 26 1 1.8668 2.0895 -0.0004 27 1 4.2008 2.8714 0.3512 28 1 5.4866 1.6801 0.6606 29 1 5.9935 4.0766 -1.3859 30 1 6.9292 2.8696 -0.4717 31 1 9.5844 4.8207 -2.0264 32 1 3.1880 2.1072 -2.0559 33 1 3.9635 3.7094 -2.0730 34 1 5.4662 2.9529 -3.9031 35 1 3.7838 0.4091 -3.7768 36 1 5.0149 0.7790 -5.0076 37 1 5.4959 0.5454 -3.3097 38 1 3.3055 4.0386 -4.4517 39 1 3.7360 2.8186 -5.6745 40 1 2.5046 2.4491 -4.4438 41 1 5.7293 -1.1076 1.0162 42 1 5.4121 -1.9363 -0.5268 43 1 6.0373 -0.2697 -0.5237 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739913947.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:25 Heat of formation + Delta-G solvation = 15.884281 kcal Electronic energy + Delta-G solvation = -20897.786154 eV Core-core repulsion = 18068.986521 eV Total energy + Delta-G solvation = -2828.799634 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -38.82007 -36.73097 -33.78180 -32.88755 -32.17606 -29.38204 -27.66950 -26.43455 -26.40036 -24.29996 -23.64573 -21.49071 -20.50541 -18.92521 -17.95327 -16.75977 -16.32321 -15.15067 -14.74982 -14.43046 -14.26559 -13.69632 -13.67771 -13.28719 -13.10763 -12.88552 -12.75881 -12.38417 -12.28282 -12.04890 -11.85652 -11.68086 -11.36929 -11.24581 -11.14534 -11.01605 -10.96011 -10.64511 -10.49719 -10.41462 -10.13461 -10.04460 -9.86654 -9.34050 -9.02929 -8.36405 -8.17045 -7.98210 -7.17167 -5.98498 -3.97126 1.26845 1.85164 2.22987 2.98698 3.33188 3.40173 3.44026 4.45716 4.90329 5.11656 5.23245 5.29051 5.36057 5.48108 5.54962 5.64358 5.71131 5.75059 5.89416 5.90194 5.91391 5.98171 6.04177 6.14942 6.23632 6.32529 6.38940 6.42543 6.48328 6.54005 6.59596 6.71949 6.78539 6.86540 6.92979 7.23152 7.27650 7.35679 7.45905 7.91277 8.16598 8.28708 8.59445 9.10344 9.65077 11.11894 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021110 B = 0.005230 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.039163 B = 5352.306732 C = 5759.373658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.193 4.193 3 C -0.121 4.121 4 C -0.093 4.093 5 C 0.113 3.887 6 N -0.525 5.525 7 C 0.192 3.808 8 C -0.500 4.500 9 H 0.078 0.922 10 C 0.054 3.946 11 N -0.900 5.900 12 Si 0.890 3.110 13 H -0.282 1.282 14 H -0.288 1.288 15 H -0.272 1.272 16 C 0.077 3.923 17 C -0.106 4.106 18 C -0.126 4.126 19 C -0.143 4.143 20 C -0.145 4.145 21 C -0.085 4.085 22 S 0.059 5.941 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.131 0.869 27 H 0.027 0.973 28 H 0.077 0.923 29 H -0.009 1.009 30 H 0.027 0.973 31 H 0.259 0.741 32 H 0.053 0.947 33 H 0.018 0.982 34 H 0.110 0.890 35 H 0.032 0.968 36 H 0.032 0.968 37 H 0.074 0.926 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.040 0.960 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.433 -8.300 3.025 16.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.309 4.309 3 C -0.152 4.152 4 C -0.104 4.104 5 C -0.017 4.017 6 N -0.249 5.249 7 C 0.067 3.933 8 C -0.539 4.539 9 H 0.096 0.904 10 C -0.147 4.147 11 N -0.540 5.540 12 Si 0.718 3.282 13 H -0.208 1.208 14 H -0.214 1.214 15 H -0.197 1.197 16 C -0.052 4.052 17 C -0.124 4.124 18 C -0.183 4.183 19 C -0.201 4.201 20 C -0.262 4.262 21 C -0.144 4.144 22 S 0.323 5.677 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.149 0.851 27 H 0.045 0.955 28 H 0.095 0.905 29 H 0.009 0.991 30 H 0.045 0.955 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.036 0.964 34 H 0.128 0.872 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.093 0.907 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.417 -10.194 2.898 17.098 hybrid contribution 0.563 2.280 -0.495 2.400 sum -12.854 -7.914 2.402 15.285 Atomic orbital electron populations 1.20252 0.88388 1.02544 1.02323 1.24179 0.99302 0.95574 1.11878 1.19965 0.92738 0.98803 1.03652 1.18802 0.94021 0.94454 1.03132 1.20701 0.94898 0.93162 0.92946 1.62111 1.07111 1.50703 1.04968 1.19811 0.86508 0.88959 0.98058 1.21417 1.04206 1.21760 1.06486 0.90431 1.24995 0.97685 0.95480 0.96543 1.69958 1.22917 1.25967 1.35179 0.86618 0.79580 0.78737 0.83259 1.20841 1.21440 1.19719 1.21962 0.93691 0.96089 0.93428 1.21423 1.00436 0.97214 0.93319 1.21618 1.00972 0.95943 0.99809 1.21831 0.98722 1.00155 0.99404 1.24160 0.98298 0.95329 1.08447 1.20402 0.90377 1.01572 1.02039 1.83977 0.97761 1.10399 1.75569 0.91181 0.91791 0.90961 0.85095 0.95475 0.90495 0.99116 0.95523 0.93104 0.92825 0.96419 0.87211 0.94933 0.94848 0.90738 0.93535 0.93382 0.94041 0.91614 0.92109 0.88101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.38 36.00 0.37 -0.38 16 2 C -0.19 -2.53 6.51 -36.00 -0.23 -2.77 16 3 C -0.12 -1.76 8.55 -41.21 -0.35 -2.11 16 4 C -0.09 -1.49 4.51 -106.25 -0.48 -1.97 16 5 C 0.11 2.03 4.44 -4.98 -0.02 2.01 16 6 N -0.52 -10.69 3.53 -237.52 -0.84 -11.52 16 7 C 0.19 4.74 4.79 -4.98 -0.02 4.72 16 8 C -0.50 -13.19 7.24 -34.44 -0.25 -13.44 16 9 H 0.08 2.00 4.58 -52.49 -0.24 1.76 16 10 C 0.05 1.47 5.46 -17.82 -0.10 1.38 16 11 N -0.90 -26.15 13.29 55.43 0.74 -25.41 16 12 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 16 C 0.08 1.47 4.27 -3.83 -0.02 1.45 16 17 C -0.11 -2.01 2.40 -90.62 -0.22 -2.22 16 18 C -0.13 -2.31 8.40 37.16 0.31 -2.00 16 19 C -0.14 -2.30 9.19 37.16 0.34 -1.96 16 20 C -0.14 -2.22 6.50 -36.00 -0.23 -2.46 16 21 C -0.09 -1.24 9.85 36.01 0.35 -0.88 16 22 S 0.06 0.79 23.31 -107.50 -2.51 -1.72 16 23 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.13 1.78 8.06 -52.49 -0.42 1.35 16 27 H 0.03 0.48 8.06 -51.93 -0.42 0.06 16 28 H 0.08 1.39 7.44 -51.93 -0.39 1.01 16 29 H -0.01 -0.24 7.67 -51.93 -0.40 -0.64 16 30 H 0.03 0.71 7.65 -51.93 -0.40 0.31 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.05 0.97 5.90 -51.93 -0.31 0.66 16 33 H 0.02 0.36 7.74 -51.93 -0.40 -0.05 16 34 H 0.11 2.46 5.14 -51.93 -0.27 2.19 16 35 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 1.51 6.74 -51.93 -0.35 1.16 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 43 H 0.10 1.71 7.36 -51.93 -0.38 1.33 16 LS Contribution 349.53 15.07 5.27 5.27 Total: -1.00 -27.89 349.53 -10.24 -38.13 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -7.33 Total: -0.33 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -0.54 Total: -20.63 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: -0.10 Total: -36.94 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.51 Total: -1.72 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.89 -10.24 -38.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739913947.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.013 kcal (2) G-P(sol) polarization free energy of solvation -27.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds