Wall clock time and date at job start Tue Mar 31 2020 05:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33391 * 125.19875 * 2 1 4 4 C 1.38429 * 114.91755 * 179.97438 * 3 2 1 5 5 C 1.50701 * 122.53958 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.46869 * 260.02893 * 5 4 3 7 7 C 1.46899 * 111.00013 * 190.00054 * 6 5 4 8 8 C 1.50701 * 109.47308 * 155.65527 * 7 6 5 9 9 H 1.07999 * 120.00115 * 2.96372 * 8 7 6 10 10 C 1.37878 * 119.99977 * 182.96217 * 8 7 6 11 11 N 1.31514 * 120.00116 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00006 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47327 * 90.00230 * 12 10 8 14 14 H 1.48503 * 109.46877 * 210.00085 * 12 10 8 15 15 H 1.48504 * 109.47320 * 329.99765 * 12 10 8 16 16 C 1.46898 * 111.00663 * 66.04210 * 6 5 4 17 17 C 1.52997 * 109.47290 * 197.41705 * 16 6 5 18 18 C 1.53006 * 109.47248 * 60.95836 * 17 16 6 19 19 C 1.53004 * 109.47246 * 180.95597 * 17 16 6 20 20 C 1.33383 * 114.92310 * 0.25077 * 4 3 2 21 21 C 1.50700 * 125.20443 * 179.75626 * 20 4 3 22 22 S 1.75882 * 125.20602 * 179.97438 * 2 1 3 23 23 H 1.08994 * 109.47548 * 89.99723 * 1 2 3 24 24 H 1.09008 * 109.46841 * 209.99715 * 1 2 3 25 25 H 1.08996 * 109.47099 * 329.99002 * 1 2 3 26 26 H 1.07994 * 122.54448 * 359.97438 * 3 2 1 27 27 H 1.09003 * 109.46994 * 20.02228 * 5 4 3 28 28 H 1.08990 * 109.47706 * 140.02569 * 5 4 3 29 29 H 1.09006 * 109.46881 * 275.65743 * 7 6 5 30 30 H 1.08994 * 109.47363 * 35.65307 * 7 6 5 31 31 H 0.96997 * 120.00540 * 180.02562 * 11 10 8 32 32 H 1.09006 * 109.46699 * 317.41663 * 16 6 5 33 33 H 1.09001 * 109.46944 * 77.41646 * 16 6 5 34 34 H 1.09001 * 109.47510 * 300.95572 * 17 16 6 35 35 H 1.09001 * 109.47081 * 59.99473 * 18 17 16 36 36 H 1.08993 * 109.47453 * 179.97438 * 18 17 16 37 37 H 1.09001 * 109.46824 * 300.00156 * 18 17 16 38 38 H 1.08993 * 109.46750 * 59.99828 * 19 17 16 39 39 H 1.08993 * 109.47330 * 180.02562 * 19 17 16 40 40 H 1.09001 * 109.46846 * 300.00381 * 19 17 16 41 41 H 1.09003 * 109.47415 * 90.00341 * 21 20 4 42 42 H 1.09010 * 109.47024 * 209.99925 * 21 20 4 43 43 H 1.08998 * 109.47035 * 329.99843 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2758 1.0900 0.0000 4 6 3.6379 0.8430 0.0006 5 6 4.6622 1.9483 0.0001 6 7 5.1713 2.1435 -1.3640 7 6 6.3340 3.0413 -1.3686 8 6 7.1746 2.7684 -2.5892 9 1 6.8505 2.0382 -3.3159 10 6 8.3575 3.4511 -2.7783 11 7 8.7524 4.3401 -1.8932 12 14 9.3991 3.1135 -4.2917 13 1 8.9866 4.0240 -5.3898 14 1 10.8303 3.3438 -3.9690 15 1 9.2088 1.7041 -4.7193 16 6 4.1153 2.6452 -2.2534 17 6 4.5300 2.4289 -3.7101 18 6 4.7199 0.9331 -3.9698 19 6 3.4408 2.9731 -4.6367 20 6 3.9751 -0.4476 -0.0043 21 6 5.3861 -0.9768 -0.0100 22 16 2.5210 -1.4371 0.0006 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3633 0.8899 0.5140 26 1 1.8668 2.0895 -0.0004 27 1 4.2008 2.8714 0.3512 28 1 5.4866 1.6801 0.6606 29 1 5.9935 4.0766 -1.3859 30 1 6.9292 2.8696 -0.4717 31 1 9.5844 4.8207 -2.0264 32 1 3.1880 2.1072 -2.0559 33 1 3.9635 3.7094 -2.0730 34 1 5.4662 2.9529 -3.9031 35 1 3.7838 0.4091 -3.7768 36 1 5.0149 0.7790 -5.0076 37 1 5.4959 0.5454 -3.3097 38 1 3.3055 4.0386 -4.4517 39 1 3.7360 2.8186 -5.6745 40 1 2.5046 2.4491 -4.4438 41 1 5.7293 -1.1076 1.0162 42 1 5.4121 -1.9363 -0.5268 43 1 6.0373 -0.2697 -0.5237 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739913947.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:25 Heat of formation + Delta-G solvation = 2.572755 kcal Electronic energy + Delta-G solvation = -20898.363385 eV Core-core repulsion = 18068.986521 eV Total energy + Delta-G solvation = -2829.376865 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.16712 -38.19430 -35.25954 -34.62320 -33.63810 -30.55681 -29.37417 -27.96056 -27.80817 -25.83379 -24.99903 -23.09163 -21.86949 -20.51746 -19.19845 -18.30632 -17.87081 -16.83529 -16.42849 -15.87428 -15.77083 -15.11611 -14.90809 -14.63006 -14.20347 -14.09837 -13.98640 -13.92067 -13.81990 -13.46092 -13.17576 -13.14458 -12.90938 -12.76484 -12.67328 -12.36970 -12.32366 -12.24130 -12.13178 -11.79354 -11.68579 -11.51711 -11.41450 -11.18632 -10.88374 -10.47353 -9.25514 -9.14408 -8.88874 -8.10205 -6.15240 0.15217 0.76633 1.10808 1.43116 1.43910 1.54640 1.79340 2.45715 3.20864 3.46530 3.96893 4.04197 4.18556 4.24344 4.33600 4.42788 4.52361 4.58508 4.64398 4.72667 4.77889 4.78661 4.79978 4.84144 4.86142 4.93437 5.06674 5.12873 5.14465 5.19253 5.22793 5.31004 5.32455 5.36185 5.45203 5.58944 5.68302 5.73778 5.82327 5.89036 6.18757 6.50478 6.69877 6.99682 7.51117 9.00212 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021110 B = 0.005230 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.039163 B = 5352.306732 C = 5759.373658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.182 4.182 3 C -0.143 4.143 4 C -0.104 4.104 5 C 0.116 3.884 6 N -0.521 5.521 7 C 0.209 3.791 8 C -0.499 4.499 9 H 0.084 0.916 10 C 0.000 4.000 11 N -0.940 5.940 12 Si 0.954 3.046 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.263 1.263 16 C 0.081 3.919 17 C -0.107 4.107 18 C -0.116 4.116 19 C -0.136 4.136 20 C -0.165 4.165 21 C -0.081 4.081 22 S 0.095 5.905 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.138 0.862 27 H 0.025 0.975 28 H 0.066 0.934 29 H -0.041 1.041 30 H 0.000 1.000 31 H 0.259 0.741 32 H 0.072 0.928 33 H 0.003 0.997 34 H 0.073 0.927 35 H 0.046 0.954 36 H 0.044 0.956 37 H 0.049 0.951 38 H 0.045 0.955 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.612 -10.111 1.947 18.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.299 4.299 3 C -0.173 4.173 4 C -0.115 4.115 5 C -0.014 4.014 6 N -0.245 5.245 7 C 0.083 3.917 8 C -0.538 4.538 9 H 0.102 0.898 10 C -0.197 4.197 11 N -0.581 5.581 12 Si 0.780 3.220 13 H -0.202 1.202 14 H -0.214 1.214 15 H -0.187 1.187 16 C -0.047 4.047 17 C -0.126 4.126 18 C -0.174 4.174 19 C -0.194 4.194 20 C -0.283 4.283 21 C -0.140 4.140 22 S 0.359 5.641 23 H 0.100 0.900 24 H 0.097 0.903 25 H 0.104 0.896 26 H 0.155 0.845 27 H 0.043 0.957 28 H 0.084 0.916 29 H -0.024 1.024 30 H 0.018 0.982 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.021 0.979 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.616 -12.022 1.817 19.791 hybrid contribution 1.144 2.790 -0.092 3.017 sum -14.471 -9.232 1.725 17.252 Atomic orbital electron populations 1.20401 0.85782 1.03976 1.03486 1.24652 1.00999 0.94888 1.09394 1.19989 0.92064 0.99787 1.05416 1.18653 0.94239 0.93914 1.04729 1.20637 0.95282 0.94165 0.91320 1.62064 1.06688 1.48932 1.06777 1.19455 0.87827 0.87967 0.96493 1.21726 1.04144 1.21178 1.06713 0.89813 1.25814 0.99120 0.95396 0.99392 1.70095 1.23489 1.27328 1.37226 0.85599 0.77664 0.78983 0.79759 1.20245 1.21412 1.18700 1.21974 0.93843 0.95362 0.93483 1.21352 0.99905 0.97563 0.93745 1.21495 1.00822 0.95177 0.99871 1.21750 0.98298 1.00190 0.99150 1.24331 0.99584 0.95834 1.08552 1.20330 0.89797 1.01275 1.02588 1.83840 0.96003 1.09579 1.74663 0.89998 0.90301 0.89645 0.84468 0.95720 0.91580 1.02359 0.98209 0.93196 0.90928 0.97879 0.90928 0.93498 0.93702 0.93223 0.93570 0.92222 0.92141 0.90421 0.90738 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.23 10.38 71.23 0.74 -0.49 16 2 C -0.18 -4.26 6.51 24.59 0.16 -4.10 16 3 C -0.14 -3.91 8.55 21.22 0.18 -3.73 16 4 C -0.10 -3.29 4.51 -20.92 -0.09 -3.38 16 5 C 0.12 4.32 4.44 85.56 0.38 4.70 16 6 N -0.52 -21.96 3.53 -905.38 -3.19 -25.15 16 7 C 0.21 10.90 4.79 85.56 0.41 11.31 16 8 C -0.50 -27.17 7.24 25.60 0.19 -26.98 16 9 H 0.08 4.39 4.58 -2.91 -0.01 4.38 16 10 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 11 N -0.94 -56.49 13.29 21.45 0.28 -56.20 16 12 Si 0.95 44.18 29.54 68.60 2.03 46.21 16 13 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 14 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 15 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 16 C 0.08 3.14 4.27 86.30 0.37 3.50 16 17 C -0.11 -4.01 2.40 -10.79 -0.03 -4.03 16 18 C -0.12 -4.10 8.40 71.98 0.60 -3.50 16 19 C -0.14 -4.10 9.19 71.98 0.66 -3.44 16 20 C -0.17 -4.91 6.50 24.59 0.16 -4.75 16 21 C -0.08 -2.34 9.85 71.24 0.70 -1.64 16 22 S 0.09 2.29 23.31 -56.49 -1.32 0.98 16 23 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 25 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 27 H 0.02 0.91 8.06 -2.39 -0.02 0.90 16 28 H 0.07 2.55 7.44 -2.39 -0.02 2.53 16 29 H -0.04 -2.38 7.67 -2.38 -0.02 -2.40 16 30 H 0.00 -0.01 7.65 -2.39 -0.02 -0.03 16 31 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 32 H 0.07 2.53 5.90 -2.38 -0.01 2.52 16 33 H 0.00 0.12 7.74 -2.39 -0.02 0.11 16 34 H 0.07 3.29 5.14 -2.39 -0.01 3.28 16 35 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.05 1.99 6.74 -2.39 -0.02 1.97 16 38 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 43 H 0.07 2.47 7.36 -2.39 -0.02 2.45 16 Total: -1.00 -61.31 349.53 3.66 -57.65 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.97 Total: 12.61 kcal Atomic # 6 Polarization: -40.98 SS G_CDS: 4.89 Total: -36.09 kcal Atomic # 7 Polarization: -78.45 SS G_CDS: -2.91 Total: -81.35 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -1.32 Total: 0.98 kcal Total: -61.31 3.66 -57.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739913947.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.224 kcal (2) G-P(sol) polarization free energy of solvation -61.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds