Wall clock time and date at job start Tue Mar 31 2020 05:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47036 * 2 1 4 4 C 1.36929 * 120.00266 * 96.26169 * 3 2 1 5 5 H 1.08009 * 120.00008 * 170.37444 * 4 3 2 6 6 C 1.38815 * 120.00308 * 350.37439 * 4 3 2 7 7 N 1.31618 * 119.99891 * 333.37140 * 6 4 3 8 8 Si 1.86798 * 120.00029 * 153.36882 * 6 4 3 9 9 H 1.48503 * 109.47222 * 95.00118 * 8 6 4 10 10 H 1.48497 * 109.47120 * 214.99667 * 8 6 4 11 11 H 1.48499 * 109.47368 * 334.99917 * 8 6 4 12 12 C 1.46503 * 119.99691 * 276.26181 * 3 2 1 13 13 C 1.50705 * 109.46996 * 273.17709 * 12 3 2 14 14 C 1.38039 * 120.05993 * 5.46892 * 13 12 3 15 15 C 1.38299 * 120.11483 * 179.72396 * 14 13 12 16 16 C 1.38340 * 120.24933 * 0.27618 * 15 14 13 17 17 C 1.38003 * 120.11951 * 0.02562 * 16 15 14 18 18 C 1.39317 * 120.06066 * 185.76078 * 13 12 3 19 19 C 1.48391 * 120.11927 * 0.02562 * 18 13 12 20 20 C 1.39341 * 120.12202 * 303.87654 * 19 18 13 21 21 C 1.38018 * 119.87750 * 179.74456 * 20 19 18 22 22 C 1.38321 * 120.11999 * 0.51193 * 21 20 19 23 23 C 1.38318 * 120.24675 * 359.76350 * 22 21 20 24 24 C 1.38020 * 120.11795 * 359.97438 * 23 22 21 25 25 H 1.08996 * 109.47156 * 66.03991 * 1 2 3 26 26 H 1.09001 * 109.47367 * 186.03829 * 1 2 3 27 27 H 1.09003 * 109.47536 * 306.03532 * 1 2 3 28 28 H 1.08999 * 109.47136 * 239.99662 * 2 1 3 29 29 H 1.09005 * 109.47269 * 119.99567 * 2 1 3 30 30 H 0.96991 * 120.00091 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.47207 * 153.17409 * 12 3 2 32 32 H 1.09004 * 109.47100 * 33.17283 * 12 3 2 33 33 H 1.07997 * 119.94292 * 359.97438 * 14 13 12 34 34 H 1.08004 * 119.87325 * 180.25081 * 15 14 13 35 35 H 1.07997 * 119.94229 * 179.97438 * 16 15 14 36 36 H 1.07994 * 120.05740 * 179.97438 * 17 16 15 37 37 H 1.08003 * 120.06109 * 359.97438 * 20 19 18 38 38 H 1.08000 * 119.94214 * 180.22773 * 21 20 19 39 39 H 1.08003 * 119.87661 * 179.74294 * 22 21 20 40 40 H 1.07998 * 119.94239 * 179.97438 * 23 22 21 41 41 H 1.08007 * 120.06015 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3685 1.9837 1.1787 5 1 2.8719 2.9392 1.1682 6 6 2.0764 1.3664 2.3873 7 7 1.0615 0.5327 2.4721 8 14 3.1239 1.7190 3.8933 9 1 2.4903 2.7959 4.6959 10 1 3.2362 0.4886 4.7171 11 1 4.4777 2.1527 3.4641 12 6 2.1320 2.1179 -1.2612 13 6 3.4737 1.8376 -1.8875 14 6 4.3212 0.9078 -1.3195 15 6 5.5504 0.6455 -1.8965 16 6 5.9401 1.3166 -3.0418 17 6 5.1033 2.2526 -3.6145 18 6 3.8635 2.5208 -3.0374 19 6 2.9596 3.5265 -3.6485 20 6 1.6654 3.1688 -4.0209 21 6 0.8272 4.1096 -4.5840 22 6 1.2732 5.4028 -4.7886 23 6 2.5588 5.7620 -4.4261 24 6 3.4038 4.8306 -3.8573 25 1 -0.3633 0.4173 -0.9391 26 1 -0.3634 -1.0220 0.1081 27 1 -0.3634 0.6046 0.8310 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 0.8576 0.1011 3.3165 31 1 2.0374 3.1864 -1.0677 32 1 1.3406 1.8002 -1.9402 33 1 4.0222 0.3813 -0.4252 34 1 6.2088 -0.0857 -1.4511 35 1 6.9012 1.1081 -3.4880 36 1 5.4087 2.7762 -4.5083 37 1 1.3176 2.1581 -3.8657 38 1 -0.1774 3.8344 -4.8696 39 1 0.6153 6.1348 -5.2333 40 1 2.9021 6.7730 -4.5885 41 1 4.4073 5.1121 -3.5742 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769001165.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:38 Heat of formation + Delta-G solvation = 77.344569 kcal Electronic energy + Delta-G solvation = -21697.753610 eV Core-core repulsion = 18736.175144 eV Total energy + Delta-G solvation = -2961.578467 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.66378 -38.03956 -35.92521 -32.65770 -31.85409 -30.78883 -30.32557 -28.96703 -28.46291 -25.68826 -23.43240 -23.05651 -22.28885 -21.15281 -20.54172 -19.77704 -17.04966 -16.61737 -15.92579 -15.28502 -15.03169 -14.70490 -14.24083 -14.04422 -13.71692 -13.39435 -13.20012 -13.02687 -12.84509 -12.58083 -12.26194 -11.89883 -11.68276 -11.47441 -11.29545 -10.94042 -10.78107 -10.74800 -10.52556 -10.50263 -10.33577 -10.04101 -9.67311 -9.36590 -8.93219 -8.79205 -8.37573 -8.16825 -7.87133 -6.89769 -5.77006 -3.06158 1.24010 1.54989 1.94488 2.00432 3.39523 3.48605 3.52383 3.91760 4.29994 4.52463 4.88355 5.06596 5.08673 5.23769 5.26827 5.35765 5.42390 5.54479 5.60788 5.68160 5.73060 5.92507 6.07963 6.11193 6.20164 6.39703 6.41297 6.45776 6.56416 6.60608 6.64648 6.68674 6.74679 6.88545 6.91359 7.02767 7.07878 7.12032 7.15277 7.37271 7.55548 7.67252 7.77643 8.10031 8.35900 9.25141 9.87872 10.33589 11.27826 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015621 B = 0.005678 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.082990 B = 4930.028098 C = 5535.059622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.167 3.833 3 N -0.593 5.593 4 C -0.250 4.250 5 H 0.072 0.928 6 C 0.001 3.999 7 N -0.893 5.893 8 Si 0.888 3.112 9 H -0.291 1.291 10 H -0.290 1.290 11 H -0.281 1.281 12 C 0.182 3.818 13 C -0.070 4.070 14 C -0.089 4.089 15 C -0.125 4.125 16 C -0.139 4.139 17 C -0.114 4.114 18 C -0.068 4.068 19 C -0.028 4.028 20 C -0.104 4.104 21 C -0.119 4.119 22 C -0.127 4.127 23 C -0.122 4.122 24 C -0.110 4.110 25 H 0.007 0.993 26 H 0.022 0.978 27 H 0.089 0.911 28 H 0.005 0.995 29 H 0.083 0.917 30 H 0.251 0.749 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.141 0.859 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.808 4.227 -13.782 14.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.042 3.958 3 N -0.314 5.314 4 C -0.378 4.378 5 H 0.089 0.911 6 C -0.197 4.197 7 N -0.538 5.538 8 Si 0.718 3.282 9 H -0.218 1.218 10 H -0.216 1.216 11 H -0.206 1.206 12 C 0.055 3.945 13 C -0.073 4.073 14 C -0.107 4.107 15 C -0.143 4.143 16 C -0.157 4.157 17 C -0.132 4.132 18 C -0.068 4.068 19 C -0.028 4.028 20 C -0.122 4.122 21 C -0.137 4.137 22 C -0.145 4.145 23 C -0.140 4.140 24 C -0.128 4.128 25 H 0.026 0.974 26 H 0.041 0.959 27 H 0.108 0.892 28 H 0.023 0.977 29 H 0.101 0.899 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.159 0.841 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.731 4.129 -13.612 14.705 hybrid contribution 0.547 0.187 0.885 1.057 sum 4.278 4.315 -12.727 14.103 Atomic orbital electron populations 1.22259 0.99237 0.99203 0.99939 1.20747 0.92555 0.84529 0.97999 1.44155 1.75518 1.10450 1.01293 1.19216 1.30876 1.04347 0.83391 0.91062 1.24662 0.97617 1.00299 0.97076 1.70206 1.25124 1.33707 1.24804 0.86487 0.81239 0.77112 0.83406 1.21805 1.21623 1.20637 1.19760 0.90455 0.96282 0.88027 1.21374 0.99116 0.93886 0.92962 1.21317 0.92622 0.96995 0.99794 1.21247 0.97015 0.99944 0.96117 1.20896 0.99377 0.98217 0.97178 1.20967 0.93637 0.98893 0.99748 1.18632 0.94246 0.97713 0.96219 1.18817 0.93568 0.93082 0.97345 1.21298 0.93021 0.99852 0.97994 1.21069 0.99516 0.93482 0.99637 1.21120 0.96076 0.96406 1.00912 1.21025 0.94244 0.99148 0.99610 1.21202 0.99822 0.92551 0.99227 0.97356 0.95922 0.89194 0.97705 0.89894 0.93869 0.92098 0.92987 0.84107 0.86844 0.86957 0.86928 0.85771 0.86145 0.86470 0.86331 0.86187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 9.63 37.16 0.36 -3.01 16 2 C 0.17 3.92 4.57 -4.04 -0.02 3.90 16 3 N -0.59 -14.25 1.37 -174.60 -0.24 -14.49 16 4 C -0.25 -6.64 9.56 -15.06 -0.14 -6.78 16 5 H 0.07 1.92 7.96 -52.48 -0.42 1.50 16 6 C 0.00 0.02 4.83 -17.43 -0.08 -0.06 16 7 N -0.89 -24.59 8.76 55.49 0.49 -24.11 16 8 Si 0.89 21.42 29.63 -169.99 -5.04 16.38 16 9 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 C 0.18 3.80 4.65 -5.19 -0.02 3.77 16 13 C -0.07 -1.34 5.88 -104.29 -0.61 -1.96 16 14 C -0.09 -1.72 9.04 -39.63 -0.36 -2.08 16 15 C -0.13 -2.05 10.04 -39.52 -0.40 -2.44 16 16 C -0.14 -2.04 10.03 -39.63 -0.40 -2.44 16 17 C -0.11 -1.72 9.62 -39.25 -0.38 -2.10 16 18 C -0.07 -1.13 5.40 -104.90 -0.57 -1.70 16 19 C -0.03 -0.43 4.84 -104.90 -0.51 -0.94 16 20 C -0.10 -1.51 8.32 -39.25 -0.33 -1.83 16 21 C -0.12 -1.51 10.03 -39.63 -0.40 -1.90 16 22 C -0.13 -1.49 10.04 -39.52 -0.40 -1.89 16 23 C -0.12 -1.47 10.03 -39.63 -0.40 -1.87 16 24 C -0.11 -1.51 9.62 -39.25 -0.38 -1.88 16 25 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.09 2.35 6.42 -51.93 -0.33 2.01 16 28 H 0.00 0.10 7.94 -51.93 -0.41 -0.31 16 29 H 0.08 2.16 5.98 -51.93 -0.31 1.85 16 30 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 31 H 0.06 1.33 7.88 -51.93 -0.41 0.92 16 32 H 0.05 1.04 6.30 -51.93 -0.33 0.71 16 33 H 0.14 3.03 6.12 -52.49 -0.32 2.70 16 34 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 35 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.12 1.80 6.90 -52.48 -0.36 1.44 16 38 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 40 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 333.71 15.07 5.03 5.03 Total: -1.00 -27.97 333.71 -10.62 -38.59 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.83 Total: 3.79 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: -5.03 Total: -25.20 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.25 Total: -38.59 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.04 Total: 16.38 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.97 -10.62 -38.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769001165.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.936 kcal (2) G-P(sol) polarization free energy of solvation -27.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds