Wall clock time and date at job start Tue Mar 31 2020 05:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42904 * 113.99331 * 2 1 4 4 C 1.53005 * 109.46712 * 180.02562 * 3 2 1 5 5 N 1.46894 * 109.47042 * 67.25554 * 4 3 2 6 6 C 1.46900 * 111.00329 * 290.51669 * 5 4 3 7 7 C 1.50703 * 109.46729 * 299.82121 * 6 5 4 8 8 H 1.07990 * 120.00371 * 354.87147 * 7 6 5 9 9 C 1.37879 * 119.99422 * 174.86881 * 7 6 5 10 10 N 1.31514 * 120.00224 * 359.97438 * 9 7 6 11 11 Si 1.86809 * 119.99760 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47015 * 60.00025 * 11 9 7 13 13 H 1.48495 * 109.47251 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.46857 * 300.00161 * 11 9 7 15 15 C 1.46903 * 111.00066 * 54.46943 * 5 4 3 16 16 C 1.50705 * 109.46801 * 66.04827 * 15 5 4 17 17 C 1.38237 * 119.99699 * 269.72364 * 16 15 5 18 18 C 1.38230 * 120.00050 * 179.76777 * 17 16 15 19 19 C 1.38241 * 119.99935 * 0.50769 * 18 17 16 20 20 C 1.50699 * 119.99783 * 179.72286 * 19 18 17 21 21 F 1.39897 * 109.47053 * 270.01887 * 20 19 18 22 22 C 1.38231 * 119.99765 * 359.74901 * 19 18 17 23 23 C 1.38228 * 120.00224 * 89.99997 * 16 15 5 24 24 H 1.08999 * 109.47297 * 60.00240 * 1 2 3 25 25 H 1.09004 * 109.46636 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46796 * 299.99495 * 1 2 3 27 27 H 1.08999 * 109.47132 * 60.00626 * 3 2 1 28 28 H 1.09000 * 109.47055 * 299.99952 * 3 2 1 29 29 H 1.09002 * 109.47136 * 307.25595 * 4 3 2 30 30 H 1.09005 * 109.46963 * 187.25475 * 4 3 2 31 31 H 1.08998 * 109.47277 * 59.81961 * 6 5 4 32 32 H 1.09000 * 109.47102 * 179.81982 * 6 5 4 33 33 H 0.97003 * 119.99709 * 179.97438 * 10 9 7 34 34 H 1.08994 * 109.47321 * 306.04613 * 15 5 4 35 35 H 1.09001 * 109.46985 * 186.04199 * 15 5 4 36 36 H 1.08000 * 120.00121 * 359.97438 * 17 16 15 37 37 H 1.08001 * 120.00176 * 180.22923 * 18 17 16 38 38 H 1.08999 * 109.47350 * 30.02588 * 20 19 18 39 39 H 1.09000 * 109.46699 * 150.02472 * 20 19 18 40 40 H 1.08000 * 120.00264 * 179.97438 * 22 19 18 41 41 H 1.08002 * 120.00195 * 0.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9808 0.6126 -1.2782 6 6 3.5904 -0.7993 -1.3873 7 6 4.2210 -1.5829 -0.2650 8 1 4.9142 -1.1001 0.4078 9 6 3.9129 -2.9163 -0.0972 10 7 3.0683 -3.5042 -0.9162 11 14 4.6940 -3.8875 1.2943 12 1 4.3306 -3.2689 2.5946 13 1 4.2022 -5.2882 1.2573 14 1 6.1705 -3.8775 1.1369 15 6 3.4641 1.3907 -2.4121 16 6 4.0812 2.7656 -2.4006 17 6 3.4619 3.7954 -1.7172 18 6 4.0303 5.0553 -1.7026 19 6 5.2126 5.2881 -2.3800 20 6 5.8290 6.6632 -2.3692 21 9 5.3366 7.4035 -3.4493 22 6 5.8291 4.2596 -3.0677 23 6 5.2634 2.9983 -3.0779 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.8489 0.5358 0.8171 30 1 3.9781 2.1724 0.1291 31 1 2.5055 -0.8824 -1.3235 32 1 3.9296 -1.1972 -2.3437 33 1 2.8519 -4.4424 -0.7983 34 1 2.3808 1.4779 -2.3294 35 1 3.7180 0.8864 -3.3445 36 1 2.5356 3.6147 -1.1920 37 1 3.5484 5.8590 -1.1657 38 1 5.5753 7.1678 -1.4370 39 1 6.9124 6.5764 -2.4522 40 1 6.7526 4.4415 -3.5973 41 1 5.7448 2.1949 -3.6159 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777594926.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:08 Heat of formation + Delta-G solvation = -59.272792 kcal Electronic energy + Delta-G solvation = -22304.341572 eV Core-core repulsion = 18906.069707 eV Total energy + Delta-G solvation = -3398.271865 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -47.73811 -39.53839 -37.90555 -35.78013 -32.91134 -31.95398 -30.90849 -29.10403 -28.08562 -26.11431 -25.51988 -23.77671 -22.64494 -22.54160 -20.89995 -19.41363 -16.64700 -16.45469 -16.24227 -16.01097 -15.95257 -15.73330 -15.16748 -14.64052 -14.56693 -14.30682 -14.00954 -13.95644 -13.43707 -13.25662 -12.52596 -12.32444 -11.93653 -11.82864 -11.56903 -11.44034 -11.15736 -11.07154 -11.00778 -10.84975 -10.78060 -10.60964 -10.54137 -10.10006 -9.76813 -9.09105 -8.95880 -8.80724 -8.58235 -8.25942 -7.05761 -5.86925 -3.84619 1.33635 1.50924 3.41026 3.44407 3.47425 3.79544 4.41676 4.45402 4.55174 4.59929 4.75864 5.01248 5.05526 5.12665 5.22426 5.48819 5.50250 5.52389 5.59428 5.61656 5.67422 5.73501 5.81682 5.88132 5.95219 6.02667 6.14032 6.20501 6.22084 6.32464 6.47354 6.53398 6.77578 6.87244 7.07696 7.37958 7.75566 7.86726 7.90535 8.16146 8.34038 8.68870 9.20306 9.76278 11.24490 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.023467 B = 0.004129 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.897947 B = 6779.507168 C = 7399.782498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.342 6.342 3 C 0.021 3.979 4 C 0.061 3.939 5 N -0.524 5.524 6 C 0.182 3.818 7 C -0.493 4.493 8 H 0.056 0.944 9 C 0.059 3.941 10 N -0.898 5.898 11 Si 0.891 3.109 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.279 1.279 15 C 0.079 3.921 16 C -0.046 4.046 17 C -0.122 4.122 18 C -0.100 4.100 19 C -0.151 4.151 20 C 0.109 3.891 21 F -0.216 7.216 22 C -0.098 4.098 23 C -0.102 4.102 24 H 0.028 0.972 25 H 0.082 0.918 26 H 0.028 0.972 27 H 0.035 0.965 28 H 0.042 0.958 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.017 0.983 33 H 0.257 0.743 34 H 0.039 0.961 35 H 0.077 0.923 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.120 0.880 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.041 17.108 -1.549 17.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.260 6.260 3 C -0.058 4.058 4 C -0.068 4.068 5 N -0.248 5.248 6 C 0.057 3.943 7 C -0.532 4.532 8 H 0.075 0.925 9 C -0.141 4.141 10 N -0.538 5.538 11 Si 0.719 3.281 12 H -0.205 1.205 13 H -0.216 1.216 14 H -0.205 1.205 15 C -0.049 4.049 16 C -0.046 4.046 17 C -0.140 4.140 18 C -0.118 4.118 19 C -0.152 4.152 20 C 0.055 3.945 21 F -0.197 7.197 22 C -0.117 4.117 23 C -0.121 4.121 24 H 0.047 0.953 25 H 0.101 0.899 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.114 0.886 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.035 0.965 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.138 0.862 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.579 16.766 -1.630 16.855 hybrid contribution -0.810 -0.415 0.791 1.206 sum -0.231 16.351 -0.838 16.374 Atomic orbital electron populations 1.22683 0.83701 1.02308 0.98265 1.88493 1.17337 1.25593 1.94557 1.23412 0.97655 0.86132 0.98559 1.22226 0.89339 0.99769 0.95463 1.62392 1.58135 1.05181 0.99045 1.20054 0.97243 0.80106 0.96848 1.20986 1.24918 0.94293 1.12984 0.92542 1.24860 0.95329 0.97704 0.96213 1.69948 1.34725 1.11434 1.37665 0.86693 0.79531 0.78942 0.82925 1.20489 1.21586 1.20477 1.21159 0.96493 0.90187 0.97046 1.20116 0.94518 0.95377 0.94607 1.21105 1.00351 0.92659 0.99897 1.20919 0.94931 0.96977 0.98965 1.20081 0.97635 0.95432 1.02016 1.20761 0.98454 0.87969 0.87358 1.92795 1.90041 1.78321 1.58515 1.20991 0.99572 0.92776 0.98313 1.21075 0.95169 0.96450 0.99367 0.95305 0.89930 0.95344 0.94644 0.94054 0.88650 0.91425 0.94408 0.96511 0.93295 0.94273 0.90482 0.86209 0.86311 0.90213 0.90136 0.86158 0.85511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.57 16 2 O -0.34 -7.16 7.57 -35.23 -0.27 -7.43 16 3 C 0.02 0.37 5.19 37.16 0.19 0.56 16 4 C 0.06 1.16 5.18 -3.82 -0.02 1.14 16 5 N -0.52 -11.01 4.74 -237.51 -1.13 -12.14 16 6 C 0.18 4.66 4.27 -4.97 -0.02 4.64 16 7 C -0.49 -13.79 8.22 -34.44 -0.28 -14.08 16 8 H 0.06 1.58 6.97 -52.49 -0.37 1.21 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.90 -26.76 13.29 55.43 0.74 -26.03 16 11 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 C 0.08 1.39 4.80 -4.97 -0.02 1.37 16 16 C -0.05 -0.69 4.87 -104.62 -0.51 -1.20 16 17 C -0.12 -1.64 8.05 -39.58 -0.32 -1.96 16 18 C -0.10 -1.20 9.70 -39.58 -0.38 -1.58 16 19 C -0.15 -1.78 5.60 -104.62 -0.59 -2.36 16 20 C 0.11 1.01 7.67 36.01 0.28 1.29 16 21 F -0.22 -2.55 17.34 2.25 0.04 -2.51 16 22 C -0.10 -1.22 9.70 -39.58 -0.38 -1.60 16 23 C -0.10 -1.45 9.70 -39.58 -0.38 -1.83 16 24 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 26 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.04 0.67 4.45 -51.93 -0.23 0.44 16 29 H 0.10 2.08 6.33 -51.93 -0.33 1.75 16 30 H 0.07 1.15 6.55 -51.93 -0.34 0.81 16 31 H 0.04 1.04 5.29 -51.93 -0.27 0.77 16 32 H 0.02 0.47 8.05 -51.93 -0.42 0.05 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.04 0.69 5.66 -51.93 -0.29 0.39 16 35 H 0.08 1.37 7.96 -51.93 -0.41 0.96 16 36 H 0.12 1.52 6.20 -52.49 -0.33 1.19 16 37 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.08 0.58 8.09 -51.93 -0.42 0.16 16 39 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 40 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 41 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 331.91 15.07 5.00 5.00 Total: -1.00 -31.32 331.91 -7.99 -39.31 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -5.93 Total: -0.71 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -1.43 Total: -12.45 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: -0.39 Total: -38.16 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: -0.27 Total: -7.43 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.04 Total: -2.51 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.32 -7.99 -39.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777594926.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.961 kcal (2) G-P(sol) polarization free energy of solvation -31.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds