Wall clock time and date at job start Tue Mar 31 2020 05:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47205 * 2 1 4 4 C 1.53003 * 109.47025 * 120.00162 * 2 1 3 5 5 N 1.46895 * 109.47276 * 65.31411 * 4 2 1 6 6 C 1.46905 * 110.99992 * 199.05917 * 5 4 2 7 7 C 1.50706 * 109.46702 * 66.05086 * 6 5 4 8 8 H 1.07997 * 120.00233 * 359.97438 * 7 6 5 9 9 C 1.37871 * 119.99380 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00729 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99638 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47327 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47592 * 120.00044 * 11 9 7 14 14 H 1.48501 * 109.47081 * 239.99987 * 11 9 7 15 15 C 1.46905 * 110.99911 * 75.11362 * 5 4 2 16 16 C 1.50703 * 109.47065 * 192.44120 * 15 5 4 17 17 C 1.38172 * 120.00994 * 254.42477 * 16 15 5 18 18 C 1.38440 * 120.02658 * 179.79217 * 17 16 15 19 19 F 1.35105 * 119.96472 * 180.25307 * 18 17 16 20 20 C 1.38467 * 120.05937 * 0.46047 * 18 17 16 21 21 C 1.38132 * 120.03239 * 359.79260 * 20 18 17 22 22 C 1.38683 * 120.01906 * 74.69751 * 16 15 5 23 23 O 1.35947 * 120.03019 * 0.02562 * 22 16 15 24 24 H 1.09001 * 109.47279 * 299.99621 * 1 2 3 25 25 H 1.09000 * 109.47356 * 60.00188 * 1 2 3 26 26 H 1.09004 * 109.46894 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47436 * 239.99638 * 2 1 3 28 28 H 1.08996 * 109.47411 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46810 * 300.00147 * 3 2 1 30 30 H 1.09005 * 109.47097 * 59.99774 * 3 2 1 31 31 H 1.08999 * 109.46863 * 305.31593 * 4 2 1 32 32 H 1.09007 * 109.47300 * 185.31720 * 4 2 1 33 33 H 1.09003 * 109.46842 * 186.04735 * 6 5 4 34 34 H 1.09001 * 109.47179 * 306.05061 * 6 5 4 35 35 H 0.97000 * 120.00680 * 179.97438 * 10 9 7 36 36 H 1.09004 * 109.46501 * 312.43264 * 15 5 4 37 37 H 1.08991 * 109.47375 * 72.43236 * 15 5 4 38 38 H 1.07999 * 119.98533 * 0.02562 * 17 16 15 39 39 H 1.08009 * 119.98583 * 179.76753 * 20 18 17 40 40 H 1.07998 * 120.01382 * 179.97438 * 21 20 18 41 41 H 0.96704 * 114.00451 * 89.99621 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6579 -2.1383 1.1868 6 6 1.7148 -2.7580 2.5175 7 6 0.6632 -2.1419 3.4039 8 1 0.0175 -1.3672 3.0176 9 6 0.5255 -2.5673 4.7081 10 7 1.3114 -3.5110 5.1785 11 14 -0.7775 -1.8031 5.8071 12 1 -1.5247 -0.7707 5.0448 13 1 -1.7176 -2.8568 6.2667 14 1 -0.1257 -1.1739 6.9837 15 6 2.4994 -2.8688 0.2296 16 6 1.8963 -4.2238 -0.0375 17 6 2.4689 -5.3554 0.5111 18 6 1.9127 -6.5999 0.2695 19 9 2.4706 -7.7049 0.8107 20 6 0.7877 -6.7135 -0.5297 21 6 0.2163 -5.5844 -1.0836 22 6 0.7698 -4.3362 -0.8384 23 8 0.2090 -3.2243 -1.3837 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9562 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6009 -0.2654 2.1366 32 1 3.1259 -0.6396 1.2982 33 1 1.5323 -3.8289 2.4277 34 1 2.7000 -2.5926 2.9536 35 1 1.2147 -3.8101 6.0962 36 1 2.5596 -2.3078 -0.7030 37 1 3.4995 -2.9916 0.6450 38 1 3.3485 -5.2685 1.1316 39 1 0.3569 -7.6854 -0.7204 40 1 -0.6609 -5.6734 -1.7072 41 1 0.5619 -2.9919 -2.2535 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778992430.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:55 Heat of formation + Delta-G solvation = -71.477304 kcal Electronic energy + Delta-G solvation = -22832.286529 eV Core-core repulsion = 19433.485437 eV Total energy + Delta-G solvation = -3398.801092 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.59354 -39.63389 -37.26148 -36.14844 -34.12657 -32.58853 -31.07470 -29.11825 -27.30391 -26.59206 -25.92719 -23.87902 -22.48347 -21.71390 -20.40868 -19.17840 -18.07952 -16.89399 -16.57453 -16.20665 -15.48772 -15.14464 -14.92139 -14.57799 -14.21543 -13.97416 -13.79469 -13.39779 -13.30990 -12.79587 -12.66042 -12.35807 -11.88569 -11.82454 -11.76975 -11.47413 -11.45711 -11.05894 -11.04543 -10.75908 -10.62942 -10.38480 -10.22056 -10.10419 -9.90604 -9.69674 -9.11615 -8.71130 -8.38395 -8.12128 -7.16672 -5.98022 -3.98062 1.34860 1.42520 3.33372 3.40978 3.45823 3.68995 4.41988 4.47057 4.51350 4.87723 5.02608 5.09740 5.32498 5.36636 5.39883 5.49469 5.58704 5.72892 5.82139 5.89656 6.00917 6.07362 6.12881 6.17527 6.25943 6.33551 6.34882 6.38795 6.49529 6.59444 6.64934 6.73674 6.96087 7.00845 7.13996 7.35835 7.37435 7.85909 7.94994 8.14722 8.25759 8.59461 9.10004 9.65509 11.12944 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.010971 B = 0.007459 C = 0.005155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.574733 B = 3752.994541 C = 5430.488057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.087 4.087 3 C -0.146 4.146 4 C 0.066 3.934 5 N -0.517 5.517 6 C 0.191 3.809 7 C -0.501 4.501 8 H 0.064 0.936 9 C 0.055 3.945 10 N -0.898 5.898 11 Si 0.893 3.107 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.286 1.286 15 C 0.097 3.903 16 C -0.058 4.058 17 C -0.126 4.126 18 C 0.086 3.914 19 F -0.143 7.143 20 C -0.146 4.146 21 C -0.125 4.125 22 C 0.121 3.879 23 O -0.474 6.474 24 H 0.044 0.956 25 H 0.032 0.968 26 H 0.079 0.921 27 H 0.058 0.942 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.015 0.985 33 H 0.033 0.967 34 H -0.013 1.013 35 H 0.259 0.741 36 H 0.073 0.927 37 H 0.031 0.969 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.782 0.063 -14.979 15.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.106 4.106 3 C -0.204 4.204 4 C -0.062 4.062 5 N -0.241 5.241 6 C 0.066 3.934 7 C -0.539 4.539 8 H 0.083 0.917 9 C -0.146 4.146 10 N -0.538 5.538 11 Si 0.722 3.278 12 H -0.196 1.196 13 H -0.211 1.211 14 H -0.212 1.212 15 C -0.031 4.031 16 C -0.059 4.059 17 C -0.146 4.146 18 C 0.067 3.933 19 F -0.122 7.122 20 C -0.165 4.165 21 C -0.143 4.143 22 C 0.076 3.924 23 O -0.282 6.282 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.098 0.902 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.034 0.966 33 H 0.051 0.949 34 H 0.004 0.996 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.049 0.951 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 1.021 -0.082 -14.419 14.456 hybrid contribution 0.511 0.064 0.855 0.998 sum 1.532 -0.018 -13.564 13.651 Atomic orbital electron populations 1.21673 0.94608 1.03411 0.99346 1.21071 0.96919 0.94307 0.98275 1.21838 1.00230 0.97098 1.01236 1.22081 0.96280 0.89486 0.98330 1.62090 1.50591 1.00824 1.10617 1.19776 0.95565 0.95433 0.82621 1.21185 1.16996 1.20647 0.95120 0.91736 1.24969 0.96282 0.95283 0.98096 1.69965 1.38760 1.29218 1.15882 0.86508 0.81695 0.79185 0.80452 1.19642 1.21104 1.21221 1.20875 0.93906 0.90599 0.97746 1.20040 0.94340 0.95241 0.96284 1.20996 1.02045 0.90509 1.01009 1.17611 0.94951 0.82759 0.97992 1.91475 1.84725 1.51620 1.84392 1.20874 0.96099 0.99765 0.99792 1.21185 1.00588 0.91186 1.01369 1.18163 0.91911 0.85705 0.96624 1.84995 1.63606 1.42835 1.36799 0.93645 0.94906 0.90165 0.92331 0.93470 0.93332 0.92798 0.89504 0.96648 0.94865 0.99555 0.93107 0.90887 0.95136 0.84716 0.84966 0.84895 0.76813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 9.08 37.16 0.34 -1.80 16 2 C -0.09 -1.32 2.97 -90.62 -0.27 -1.59 16 3 C -0.15 -1.91 9.19 37.16 0.34 -1.57 16 4 C 0.07 1.25 4.20 -3.83 -0.02 1.23 16 5 N -0.52 -10.67 3.87 -237.50 -0.92 -11.59 16 6 C 0.19 4.92 4.58 -4.97 -0.02 4.90 16 7 C -0.50 -14.06 8.24 -34.44 -0.28 -14.34 16 8 H 0.06 1.81 7.30 -52.49 -0.38 1.42 16 9 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 11 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 C 0.10 1.67 4.53 -4.97 -0.02 1.64 16 16 C -0.06 -0.98 4.54 -104.48 -0.47 -1.45 16 17 C -0.13 -2.17 8.87 -39.53 -0.35 -2.52 16 18 C 0.09 1.41 7.30 -39.42 -0.29 1.12 16 19 F -0.14 -2.40 17.27 2.25 0.04 -2.36 16 20 C -0.15 -2.07 10.02 -39.54 -0.40 -2.47 16 21 C -0.12 -1.72 9.98 -39.44 -0.39 -2.12 16 22 C 0.12 1.87 6.68 -39.24 -0.26 1.60 16 23 O -0.47 -6.60 12.58 -19.57 -0.25 -6.85 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.08 1.48 7.50 -51.93 -0.39 1.09 16 27 H 0.06 0.83 6.60 -51.93 -0.34 0.49 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.86 6.58 -51.93 -0.34 1.52 16 32 H 0.02 0.28 8.01 -51.93 -0.42 -0.13 16 33 H 0.03 0.93 6.51 -51.93 -0.34 0.59 16 34 H -0.01 -0.37 8.12 -51.93 -0.42 -0.79 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.07 1.07 6.35 -51.93 -0.33 0.74 16 37 H 0.03 0.53 7.90 -51.93 -0.41 0.12 16 38 H 0.13 2.30 8.00 -52.49 -0.42 1.88 16 39 H 0.13 1.53 8.06 -52.48 -0.42 1.11 16 40 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 41 H 0.38 3.27 9.06 45.56 0.41 3.68 16 LS Contribution 340.57 15.07 5.13 5.13 Total: -1.00 -31.41 340.57 -7.95 -39.36 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -5.47 Total: 1.45 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -2.20 Total: -15.88 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: -0.18 Total: -37.86 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.25 Total: -6.85 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.41 -7.95 -39.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778992430.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.116 kcal (2) G-P(sol) polarization free energy of solvation -31.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds