Wall clock time and date at job start Tue Mar 31 2020 05:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47260 * 2 1 4 4 C 1.53000 * 109.47399 * 120.00116 * 2 1 3 5 5 N 1.46899 * 109.47285 * 177.38932 * 4 2 1 6 6 C 1.46906 * 111.00255 * 289.12590 * 5 4 2 7 7 C 1.50696 * 109.46893 * 76.89065 * 6 5 4 8 8 H 1.08009 * 120.00167 * 5.56551 * 7 6 5 9 9 C 1.37882 * 119.99955 * 185.56441 * 7 6 5 10 10 N 1.31505 * 119.99677 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99970 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47012 * 59.99915 * 11 9 7 13 13 H 1.48501 * 109.47144 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.46928 * 300.00064 * 11 9 7 15 15 C 1.46900 * 110.99978 * 165.17114 * 5 4 2 16 16 H 1.09000 * 109.47081 * 170.87421 * 15 5 4 17 17 C 1.53004 * 109.47046 * 50.88093 * 15 5 4 18 18 C 1.52998 * 109.47363 * 290.87787 * 15 5 4 19 19 C 1.50695 * 109.47134 * 292.92729 * 18 15 5 20 20 C 1.38423 * 122.54177 * 97.23703 * 19 18 15 21 21 C 1.33397 * 114.92038 * 179.97438 * 20 19 18 22 22 S 1.75883 * 109.59300 * 359.97438 * 21 20 19 23 23 C 1.33394 * 122.53680 * 276.94414 * 19 18 15 24 24 H 1.08997 * 109.47259 * 299.99778 * 1 2 3 25 25 H 1.09000 * 109.47110 * 59.99885 * 1 2 3 26 26 H 1.08994 * 109.47284 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47406 * 240.00755 * 2 1 3 28 28 H 1.08996 * 109.47112 * 180.38508 * 3 2 1 29 29 H 1.08995 * 109.47386 * 300.39310 * 3 2 1 30 30 H 1.09005 * 109.46581 * 60.39021 * 3 2 1 31 31 H 1.09001 * 109.46445 * 57.39498 * 4 2 1 32 32 H 1.08996 * 109.47393 * 297.39094 * 4 2 1 33 33 H 1.09002 * 109.47134 * 196.89218 * 6 5 4 34 34 H 1.09001 * 109.46689 * 316.89349 * 6 5 4 35 35 H 0.97002 * 119.99579 * 179.97438 * 10 9 7 36 36 H 1.08997 * 109.47082 * 59.99762 * 17 15 5 37 37 H 1.09000 * 109.46632 * 299.99603 * 17 15 5 38 38 H 1.08994 * 109.47387 * 180.02562 * 17 15 5 39 39 H 1.08999 * 109.46847 * 52.92383 * 18 15 5 40 40 H 1.09002 * 109.47212 * 172.92349 * 18 15 5 41 41 H 1.07995 * 122.54370 * 359.95890 * 20 19 18 42 42 H 1.07999 * 125.19992 * 179.97438 * 21 20 19 43 43 H 1.07995 * 125.20609 * 0.03163 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5076 -0.7761 1.2180 6 6 3.9779 -1.7079 0.1842 7 6 3.8524 -1.0599 -1.1705 8 1 3.5480 -0.0265 -1.2488 9 6 4.1263 -1.7861 -2.3102 10 7 4.4965 -3.0444 -2.2148 11 14 3.9701 -0.9831 -3.9895 12 1 4.8947 0.1761 -4.0719 13 1 4.3180 -1.9691 -5.0440 14 1 2.5740 -0.5176 -4.1876 15 6 4.0491 -1.1349 2.5356 16 1 5.1186 -1.3269 2.4489 17 6 3.3455 -2.3919 3.0511 18 6 3.8156 0.0179 3.5141 19 6 4.6473 1.2044 3.1003 20 6 4.1335 2.2492 2.3516 21 6 5.0034 3.2209 2.0715 22 16 6.5680 2.8328 2.7748 23 6 5.9331 1.3302 3.4325 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 3.1299 1.4425 -0.0069 29 1 1.6710 1.9584 -0.8864 30 1 1.6823 1.9543 0.8935 31 1 1.6390 -1.7346 1.2727 32 1 1.7154 -0.1812 2.1386 33 1 5.0216 -1.9609 0.3707 34 1 3.3738 -2.6147 0.2105 35 1 4.6889 -3.5554 -3.0166 36 1 3.5120 -3.2131 2.3540 37 1 2.2761 -2.1999 3.1378 38 1 3.7469 -2.6579 4.0290 39 1 2.7609 0.2931 3.5063 40 1 4.1022 -0.2942 4.5184 41 1 3.1063 2.2755 2.0192 42 1 4.7808 4.1100 1.5002 43 1 6.4983 0.6176 4.0149 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783380547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:17 Heat of formation + Delta-G solvation = 26.620197 kcal Electronic energy + Delta-G solvation = -21371.720031 eV Core-core repulsion = 18543.385942 eV Total energy + Delta-G solvation = -2828.334089 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.88053 -37.07689 -34.43057 -32.78326 -30.84051 -29.12057 -26.95789 -26.85975 -26.21982 -24.77419 -22.84553 -21.69119 -19.79221 -18.84587 -18.03365 -17.25928 -16.32073 -15.19293 -14.94234 -14.65869 -14.33951 -13.75147 -13.35068 -13.01200 -12.79518 -12.59279 -12.53762 -12.43958 -12.12934 -12.01342 -11.89165 -11.47481 -11.30446 -11.18465 -11.00881 -10.94176 -10.61981 -10.45673 -10.35228 -10.27926 -10.07642 -9.96580 -9.81967 -9.26342 -8.99405 -8.36539 -8.32502 -7.92299 -7.08312 -5.97112 -3.94043 1.42672 2.06601 2.36902 3.20400 3.35007 3.39545 3.42390 4.45173 4.92952 5.20059 5.35329 5.37238 5.50149 5.63839 5.68447 5.73529 5.78139 5.83755 5.96635 5.98194 6.02604 6.06780 6.19342 6.21800 6.32725 6.39623 6.42904 6.50087 6.50778 6.60790 6.66684 6.77498 6.85843 6.89721 6.98276 7.23683 7.33992 7.43392 7.55624 7.92915 8.21947 8.31739 8.65223 9.12209 9.66103 11.13075 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014020 B = 0.006473 C = 0.005972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.621510 B = 4324.743657 C = 4687.421081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C -0.131 4.131 4 C 0.077 3.923 5 N -0.520 5.520 6 C 0.195 3.805 7 C -0.499 4.499 8 H 0.077 0.923 9 C 0.053 3.947 10 N -0.899 5.899 11 Si 0.888 3.112 12 H -0.277 1.277 13 H -0.290 1.290 14 H -0.277 1.277 15 C 0.086 3.914 16 H 0.075 0.925 17 C -0.182 4.182 18 C -0.054 4.054 19 C -0.064 4.064 20 C -0.106 4.106 21 C -0.217 4.217 22 S 0.054 5.946 23 C -0.221 4.221 24 H 0.039 0.961 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.121 0.879 28 H 0.078 0.922 29 H 0.033 0.967 30 H 0.032 0.968 31 H 0.021 0.979 32 H 0.048 0.952 33 H 0.019 0.981 34 H -0.004 1.004 35 H 0.259 0.741 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.144 0.856 42 H 0.156 0.844 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.183 8.241 11.160 14.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.132 4.132 3 C -0.188 4.188 4 C -0.051 4.051 5 N -0.244 5.244 6 C 0.069 3.931 7 C -0.538 4.538 8 H 0.095 0.905 9 C -0.148 4.148 10 N -0.539 5.539 11 Si 0.716 3.284 12 H -0.202 1.202 13 H -0.216 1.216 14 H -0.202 1.202 15 C -0.024 4.024 16 H 0.093 0.907 17 C -0.242 4.242 18 C -0.094 4.094 19 C -0.076 4.076 20 C -0.136 4.136 21 C -0.352 4.352 22 S 0.317 5.683 23 C -0.356 4.356 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.138 0.862 28 H 0.097 0.903 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.039 0.961 32 H 0.066 0.934 33 H 0.037 0.963 34 H 0.014 0.986 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.162 0.838 42 H 0.174 0.826 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.515 9.296 10.943 14.368 hybrid contribution -1.655 -1.298 -0.945 2.306 sum -2.170 7.998 9.998 12.986 Atomic orbital electron populations 1.21837 0.97518 1.00556 1.00198 1.21608 0.92613 0.97024 1.01966 1.21816 1.03105 0.95536 0.98360 1.21937 0.88984 0.97418 0.96774 1.62247 1.07047 1.52236 1.02846 1.19730 0.94798 0.89488 0.89049 1.21376 1.44024 0.98477 0.89876 0.90510 1.24991 0.95845 0.94855 0.99075 1.69948 1.47040 1.08075 1.28880 0.86709 0.78596 0.79088 0.83970 1.20244 1.21552 1.20229 1.21680 0.99329 0.91120 0.90277 0.90708 1.22489 1.00996 0.99868 1.00798 1.20477 0.98851 0.92414 0.97696 1.18756 0.93731 0.96674 0.98456 1.20274 1.01703 0.92779 0.98845 1.25420 0.95862 1.04882 1.09010 1.83981 1.14293 1.17908 1.52108 1.25243 0.98565 1.01799 1.09947 0.94182 0.93495 0.93569 0.86161 0.90311 0.94816 0.94927 0.96126 0.93365 0.96282 0.98590 0.93089 0.92166 0.92749 0.93345 0.91088 0.91630 0.83834 0.82592 0.82693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.19 37.15 0.34 -1.91 16 2 C -0.11 -2.11 2.39 -90.62 -0.22 -2.32 16 3 C -0.13 -2.26 7.35 37.16 0.27 -1.98 16 4 C 0.08 1.40 3.03 -3.82 -0.01 1.39 16 5 N -0.52 -10.23 3.53 -228.08 -0.80 -11.04 16 6 C 0.19 4.80 4.17 -4.97 -0.02 4.78 16 7 C -0.50 -13.20 6.72 -34.44 -0.23 -13.43 16 8 H 0.08 1.98 4.65 -52.48 -0.24 1.74 16 9 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 10 N -0.90 -26.30 13.29 55.43 0.74 -25.57 16 11 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 C 0.09 1.45 2.26 -67.71 -0.15 1.30 16 16 H 0.07 1.37 7.73 -51.93 -0.40 0.97 16 17 C -0.18 -2.84 8.46 37.16 0.31 -2.53 16 18 C -0.05 -0.77 4.95 -27.89 -0.14 -0.91 16 19 C -0.06 -0.96 4.83 -106.25 -0.51 -1.47 16 20 C -0.11 -1.60 9.24 -41.21 -0.38 -1.98 16 21 C -0.22 -3.07 11.23 29.04 0.33 -2.75 16 22 S 0.05 0.75 23.34 -107.50 -2.51 -1.76 16 23 C -0.22 -3.16 10.99 29.04 0.32 -2.84 16 24 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.12 2.71 4.83 -51.93 -0.25 2.46 16 28 H 0.08 1.53 5.88 -51.93 -0.31 1.22 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.03 0.49 6.68 -51.93 -0.35 0.14 16 31 H 0.02 0.40 6.86 -51.93 -0.36 0.04 16 32 H 0.05 0.78 6.05 -51.93 -0.31 0.47 16 33 H 0.02 0.52 7.67 -51.93 -0.40 0.12 16 34 H 0.00 -0.10 7.34 -51.93 -0.38 -0.48 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.06 1.07 7.32 -51.93 -0.38 0.69 16 37 H 0.05 0.81 6.64 -51.93 -0.34 0.47 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.99 6.16 -51.93 -0.32 0.67 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.14 2.13 5.20 -52.49 -0.27 1.86 16 42 H 0.16 1.89 8.06 -52.49 -0.42 1.47 16 43 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 337.56 15.07 5.09 5.09 Total: -1.00 -27.89 337.56 -9.53 -37.42 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -6.83 Total: 2.76 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: -0.19 Total: -23.29 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: -0.07 Total: -36.60 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -2.51 Total: -1.76 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.89 -9.53 -37.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783380547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.039 kcal (2) G-P(sol) polarization free energy of solvation -27.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds