Wall clock time and date at job start Tue Mar 31 2020 05:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46766 * 2 1 4 4 C 1.52991 * 109.47466 * 239.99596 * 2 1 3 5 5 N 1.46898 * 109.47234 * 185.82304 * 4 2 1 6 6 C 1.46900 * 111.00076 * 212.42516 * 5 4 2 7 7 C 1.50695 * 109.47051 * 70.82170 * 6 5 4 8 8 H 1.07995 * 120.00102 * 5.08012 * 7 6 5 9 9 C 1.37880 * 119.99957 * 185.08768 * 7 6 5 10 10 N 1.31513 * 119.99907 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00189 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47122 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47402 * 119.99293 * 11 9 7 14 14 H 1.48499 * 109.47339 * 239.99798 * 11 9 7 15 15 C 1.46901 * 110.99898 * 88.46967 * 5 4 2 16 16 H 1.09003 * 109.47356 * 71.36203 * 15 5 4 17 17 C 1.53002 * 109.47225 * 191.36176 * 15 5 4 18 18 C 1.52998 * 109.47408 * 311.36289 * 15 5 4 19 19 C 1.50700 * 109.47316 * 178.33882 * 18 15 5 20 20 C 1.38424 * 122.53712 * 96.09747 * 19 18 15 21 21 C 1.33391 * 114.91959 * 179.97438 * 20 19 18 22 22 S 1.75878 * 109.59319 * 359.97438 * 21 20 19 23 23 C 1.33386 * 122.54053 * 275.80790 * 19 18 15 24 24 H 1.09004 * 109.47178 * 60.01032 * 1 2 3 25 25 H 1.09007 * 109.47211 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47517 * 300.00390 * 1 2 3 27 27 H 1.09003 * 109.46701 * 119.99573 * 2 1 3 28 28 H 1.08997 * 109.47543 * 55.05442 * 3 2 1 29 29 H 1.09004 * 109.47120 * 175.05570 * 3 2 1 30 30 H 1.09001 * 109.47180 * 295.05221 * 3 2 1 31 31 H 1.09000 * 109.47473 * 305.82342 * 4 2 1 32 32 H 1.09003 * 109.47418 * 65.82301 * 4 2 1 33 33 H 1.09005 * 109.46806 * 190.82001 * 6 5 4 34 34 H 1.09002 * 109.46900 * 310.81670 * 6 5 4 35 35 H 0.97003 * 120.00258 * 180.02562 * 10 9 7 36 36 H 1.08995 * 109.47115 * 60.00018 * 17 15 5 37 37 H 1.08997 * 109.47031 * 180.02562 * 17 15 5 38 38 H 1.09005 * 109.46609 * 300.00194 * 17 15 5 39 39 H 1.08999 * 109.47129 * 298.33797 * 18 15 5 40 40 H 1.09004 * 109.47323 * 58.34203 * 18 15 5 41 41 H 1.08001 * 122.54316 * 359.97438 * 20 19 18 42 42 H 1.08004 * 125.19843 * 179.97438 * 21 20 19 43 43 H 1.07991 * 125.20143 * 0.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5023 -0.8441 -1.1808 6 6 4.0986 -0.7868 -2.5221 7 6 3.9848 0.6151 -3.0630 8 1 3.5914 1.4042 -2.4394 9 6 4.3827 0.8903 -4.3541 10 7 4.8621 -0.0705 -5.1134 11 14 4.2409 2.6280 -5.0248 12 1 3.6748 3.5175 -3.9792 13 1 5.5865 3.1185 -5.4171 14 1 3.3482 2.6292 -6.2115 15 6 3.8951 -2.0752 -0.4822 16 1 3.6750 -2.9368 -1.1126 17 6 5.3945 -2.0341 -0.1803 18 6 3.1140 -2.1893 0.8284 19 6 3.4869 -3.4724 1.5254 20 6 4.4483 -3.5272 2.5198 21 6 4.6573 -4.7405 3.0332 22 16 3.6009 -5.9046 2.2445 23 6 2.9116 -4.6402 1.2348 24 1 -0.3634 0.5137 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6061 1.9813 0.8423 29 1 3.1264 1.4438 0.0886 30 1 1.7507 1.9301 -0.9310 31 1 1.5942 -1.7145 -1.3028 32 1 1.7644 -0.1509 -2.1361 33 1 5.1497 -1.0699 -2.4648 34 1 3.5725 -1.4753 -3.1834 35 1 5.1424 0.1232 -6.0216 36 1 5.6147 -1.1726 0.4500 37 1 5.6860 -2.9477 0.3377 38 1 5.9510 -1.9528 -1.1141 39 1 3.3568 -1.3430 1.4709 40 1 2.0450 -2.1890 0.6155 41 1 4.9883 -2.6539 2.8547 42 1 5.3668 -4.9724 3.8138 43 1 2.1415 -4.7870 0.4921 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783380554.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:19 Heat of formation + Delta-G solvation = 25.489368 kcal Electronic energy + Delta-G solvation = -20722.374240 eV Core-core repulsion = 17893.991114 eV Total energy + Delta-G solvation = -2828.383126 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.10884 -37.29100 -34.30037 -32.90308 -31.20135 -29.35836 -27.52072 -26.58877 -26.27889 -24.25732 -23.42007 -21.59439 -19.72485 -19.21767 -18.52108 -17.48473 -16.30728 -15.53647 -14.85000 -14.66515 -14.53544 -13.88689 -13.46294 -13.25487 -13.09950 -12.91796 -12.62061 -12.40806 -12.17895 -11.94470 -11.74147 -11.64614 -11.55738 -11.26496 -10.97004 -10.87959 -10.77776 -10.67058 -10.51979 -10.42241 -10.21821 -9.94829 -9.71246 -9.59759 -9.11763 -8.73031 -8.38419 -8.25385 -7.14934 -5.98573 -3.98808 1.06354 1.71157 2.02749 2.79363 3.32270 3.40130 3.44782 4.44742 4.81246 4.97819 5.19898 5.35957 5.38122 5.42167 5.51356 5.52341 5.59600 5.65680 5.76006 5.93640 5.99012 6.06420 6.12408 6.17522 6.22184 6.25943 6.35807 6.38825 6.46065 6.56853 6.58420 6.63738 6.67698 6.70098 6.87492 7.00593 7.07666 7.36165 7.43374 7.90287 8.19229 8.28157 8.62593 9.11245 9.65238 11.12062 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020690 B = 0.004546 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.958491 B = 6157.373757 C = 6948.642646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 C -0.131 4.131 4 C 0.066 3.934 5 N -0.528 5.528 6 C 0.191 3.809 7 C -0.500 4.500 8 H 0.067 0.933 9 C 0.054 3.946 10 N -0.900 5.900 11 Si 0.893 3.107 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.286 1.286 15 C 0.090 3.910 16 H 0.028 0.972 17 C -0.139 4.139 18 C -0.062 4.062 19 C -0.086 4.086 20 C -0.121 4.121 21 C -0.216 4.216 22 S 0.068 5.932 23 C -0.212 4.212 24 H 0.052 0.948 25 H 0.045 0.955 26 H 0.047 0.953 27 H 0.077 0.923 28 H 0.032 0.968 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.019 0.981 32 H 0.079 0.921 33 H 0.031 0.969 34 H -0.009 1.009 35 H 0.259 0.741 36 H 0.057 0.943 37 H 0.047 0.953 38 H 0.060 0.940 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.140 0.860 42 H 0.161 0.839 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.230 -7.552 15.064 17.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.188 4.188 4 C -0.063 4.063 5 N -0.253 5.253 6 C 0.066 3.934 7 C -0.538 4.538 8 H 0.085 0.915 9 C -0.147 4.147 10 N -0.541 5.541 11 Si 0.721 3.279 12 H -0.196 1.196 13 H -0.211 1.211 14 H -0.213 1.213 15 C -0.019 4.019 16 H 0.046 0.954 17 C -0.196 4.196 18 C -0.102 4.102 19 C -0.099 4.099 20 C -0.152 4.152 21 C -0.351 4.351 22 S 0.331 5.669 23 C -0.347 4.347 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.095 0.905 28 H 0.051 0.949 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.037 0.963 32 H 0.098 0.902 33 H 0.049 0.951 34 H 0.009 0.991 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.158 0.842 42 H 0.178 0.822 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -4.197 -8.767 15.294 18.121 hybrid contribution -0.055 1.619 -1.219 2.028 sum -4.252 -7.147 14.074 16.348 Atomic orbital electron populations 1.21836 0.96643 1.00740 1.01188 1.21512 0.93722 0.97619 0.99365 1.21653 1.02262 0.94964 0.99954 1.22053 0.88721 0.97445 0.98043 1.62124 1.07829 1.33124 1.22196 1.19793 0.94636 0.96981 0.82006 1.21253 1.41026 0.94550 0.97004 0.91510 1.24985 0.95690 0.97023 0.97009 1.69973 1.43687 1.31877 1.08529 0.86518 0.77620 0.84921 0.78845 1.19629 1.21140 1.21260 1.21504 0.95171 0.92228 0.92976 0.95410 1.21832 0.95350 1.00531 1.01907 1.20869 1.00422 0.92557 0.96376 1.19104 0.96931 0.96219 0.97619 1.20180 0.99411 0.97986 0.97636 1.25526 1.06323 0.96366 1.06883 1.84137 1.35555 1.13017 1.34206 1.25413 1.07572 0.95316 1.06430 0.92915 0.93555 0.93345 0.90537 0.94886 0.91349 0.93139 0.96308 0.90227 0.95149 0.99093 0.93130 0.92371 0.93428 0.92129 0.90076 0.90333 0.84206 0.82184 0.82215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.19 37.16 0.34 -1.61 16 2 C -0.10 -1.60 2.43 -90.62 -0.22 -1.82 16 3 C -0.13 -2.16 8.99 37.15 0.33 -1.83 16 4 C 0.07 1.23 3.78 -3.83 -0.01 1.21 16 5 N -0.53 -10.75 3.82 -228.09 -0.87 -11.62 16 6 C 0.19 4.84 4.53 -4.98 -0.02 4.81 16 7 C -0.50 -13.67 8.26 -34.44 -0.28 -13.95 16 8 H 0.07 1.81 7.77 -52.49 -0.41 1.40 16 9 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 10 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 11 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 15 C 0.09 1.58 2.03 -67.71 -0.14 1.44 16 16 H 0.03 0.53 8.11 -51.93 -0.42 0.11 16 17 C -0.14 -2.35 8.81 37.16 0.33 -2.03 16 18 C -0.06 -0.89 3.36 -27.88 -0.09 -0.99 16 19 C -0.09 -1.13 4.29 -106.25 -0.46 -1.58 16 20 C -0.12 -1.44 8.82 -41.21 -0.36 -1.81 16 21 C -0.22 -2.31 11.23 29.04 0.33 -1.99 16 22 S 0.07 0.74 23.34 -107.50 -2.51 -1.76 16 23 C -0.21 -2.66 10.99 29.04 0.32 -2.34 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.08 1.12 4.31 -51.93 -0.22 0.90 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 1.25 7.91 -51.93 -0.41 0.84 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.02 0.34 7.17 -51.93 -0.37 -0.04 16 32 H 0.08 1.71 7.00 -51.93 -0.36 1.34 16 33 H 0.03 0.82 6.04 -51.93 -0.31 0.51 16 34 H -0.01 -0.25 8.07 -51.93 -0.42 -0.66 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.05 0.72 6.53 -51.93 -0.34 0.38 16 38 H 0.06 1.16 6.35 -51.93 -0.33 0.83 16 39 H 0.08 1.15 7.17 -51.93 -0.37 0.78 16 40 H 0.08 1.11 5.36 -51.93 -0.28 0.83 16 41 H 0.14 1.51 8.06 -52.49 -0.42 1.08 16 42 H 0.16 1.33 8.06 -52.48 -0.42 0.90 16 43 H 0.16 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 346.60 15.07 5.22 5.22 Total: -1.00 -28.67 346.60 -9.67 -38.34 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -7.19 Total: 0.26 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: -0.04 Total: -21.06 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: -0.14 Total: -37.55 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.51 Total: -1.76 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.67 -9.67 -38.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783380554.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.829 kcal (2) G-P(sol) polarization free energy of solvation -28.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds