Wall clock time and date at job start Tue Mar 31 2020 05:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46766 * 2 1 4 4 C 1.52991 * 109.47466 * 239.99596 * 2 1 3 5 5 N 1.46898 * 109.47234 * 185.82304 * 4 2 1 6 6 C 1.46900 * 111.00076 * 212.42516 * 5 4 2 7 7 C 1.50695 * 109.47051 * 70.82170 * 6 5 4 8 8 H 1.07995 * 120.00102 * 5.08012 * 7 6 5 9 9 C 1.37880 * 119.99957 * 185.08768 * 7 6 5 10 10 N 1.31513 * 119.99907 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00189 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47122 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47402 * 119.99293 * 11 9 7 14 14 H 1.48499 * 109.47339 * 239.99798 * 11 9 7 15 15 C 1.46901 * 110.99898 * 88.46967 * 5 4 2 16 16 H 1.09003 * 109.47356 * 71.36203 * 15 5 4 17 17 C 1.53002 * 109.47225 * 191.36176 * 15 5 4 18 18 C 1.52998 * 109.47408 * 311.36289 * 15 5 4 19 19 C 1.50700 * 109.47316 * 178.33882 * 18 15 5 20 20 C 1.38424 * 122.53712 * 96.09747 * 19 18 15 21 21 C 1.33391 * 114.91959 * 179.97438 * 20 19 18 22 22 S 1.75878 * 109.59319 * 359.97438 * 21 20 19 23 23 C 1.33386 * 122.54053 * 275.80790 * 19 18 15 24 24 H 1.09004 * 109.47178 * 60.01032 * 1 2 3 25 25 H 1.09007 * 109.47211 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47517 * 300.00390 * 1 2 3 27 27 H 1.09003 * 109.46701 * 119.99573 * 2 1 3 28 28 H 1.08997 * 109.47543 * 55.05442 * 3 2 1 29 29 H 1.09004 * 109.47120 * 175.05570 * 3 2 1 30 30 H 1.09001 * 109.47180 * 295.05221 * 3 2 1 31 31 H 1.09000 * 109.47473 * 305.82342 * 4 2 1 32 32 H 1.09003 * 109.47418 * 65.82301 * 4 2 1 33 33 H 1.09005 * 109.46806 * 190.82001 * 6 5 4 34 34 H 1.09002 * 109.46900 * 310.81670 * 6 5 4 35 35 H 0.97003 * 120.00258 * 180.02562 * 10 9 7 36 36 H 1.08995 * 109.47115 * 60.00018 * 17 15 5 37 37 H 1.08997 * 109.47031 * 180.02562 * 17 15 5 38 38 H 1.09005 * 109.46609 * 300.00194 * 17 15 5 39 39 H 1.08999 * 109.47129 * 298.33797 * 18 15 5 40 40 H 1.09004 * 109.47323 * 58.34203 * 18 15 5 41 41 H 1.08001 * 122.54316 * 359.97438 * 20 19 18 42 42 H 1.08004 * 125.19843 * 179.97438 * 21 20 19 43 43 H 1.07991 * 125.20143 * 0.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5023 -0.8441 -1.1808 6 6 4.0986 -0.7868 -2.5221 7 6 3.9848 0.6151 -3.0630 8 1 3.5914 1.4042 -2.4394 9 6 4.3827 0.8903 -4.3541 10 7 4.8621 -0.0705 -5.1134 11 14 4.2409 2.6280 -5.0248 12 1 3.6748 3.5175 -3.9792 13 1 5.5865 3.1185 -5.4171 14 1 3.3482 2.6292 -6.2115 15 6 3.8951 -2.0752 -0.4822 16 1 3.6750 -2.9368 -1.1126 17 6 5.3945 -2.0341 -0.1803 18 6 3.1140 -2.1893 0.8284 19 6 3.4869 -3.4724 1.5254 20 6 4.4483 -3.5272 2.5198 21 6 4.6573 -4.7405 3.0332 22 16 3.6009 -5.9046 2.2445 23 6 2.9116 -4.6402 1.2348 24 1 -0.3634 0.5137 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6061 1.9813 0.8423 29 1 3.1264 1.4438 0.0886 30 1 1.7507 1.9301 -0.9310 31 1 1.5942 -1.7145 -1.3028 32 1 1.7644 -0.1509 -2.1361 33 1 5.1497 -1.0699 -2.4648 34 1 3.5725 -1.4753 -3.1834 35 1 5.1424 0.1232 -6.0216 36 1 5.6147 -1.1726 0.4500 37 1 5.6860 -2.9477 0.3377 38 1 5.9510 -1.9528 -1.1141 39 1 3.3568 -1.3430 1.4709 40 1 2.0450 -2.1890 0.6155 41 1 4.9883 -2.6539 2.8547 42 1 5.3668 -4.9724 3.8138 43 1 2.1415 -4.7870 0.4921 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783380554.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:18 Heat of formation + Delta-G solvation = 10.712629 kcal Electronic energy + Delta-G solvation = -20723.015007 eV Core-core repulsion = 17893.991114 eV Total energy + Delta-G solvation = -2829.023893 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.38719 -38.51822 -35.72161 -34.84916 -32.72990 -30.50504 -29.18709 -27.80688 -27.76790 -25.86527 -24.64473 -23.24332 -21.00144 -20.73562 -19.50863 -18.53915 -18.29467 -16.85196 -16.55794 -16.32163 -15.77954 -15.32228 -14.83002 -14.71291 -14.26711 -14.22207 -13.86575 -13.77890 -13.60358 -13.28168 -13.12299 -12.98793 -12.83428 -12.81628 -12.63003 -12.46316 -12.25675 -12.09968 -11.98208 -11.75416 -11.58921 -11.56728 -11.26173 -11.22140 -10.91642 -10.55301 -9.63944 -9.18185 -8.89817 -8.15905 -6.24211 0.15981 0.83410 1.13643 1.39851 1.40867 1.54024 1.84089 2.41833 3.16412 3.29062 4.00051 4.06073 4.15052 4.21445 4.24152 4.32533 4.45742 4.52149 4.64203 4.67725 4.71643 4.87772 4.92019 4.95239 4.96279 4.97127 5.04958 5.16462 5.18968 5.23023 5.25630 5.29968 5.34824 5.38262 5.45267 5.55525 5.66548 5.69228 5.73166 5.76696 6.16213 6.46467 6.75405 6.94571 7.45040 8.94880 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020690 B = 0.004546 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.958491 B = 6157.373757 C = 6948.642646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.095 4.095 3 C -0.127 4.127 4 C 0.068 3.932 5 N -0.527 5.527 6 C 0.207 3.793 7 C -0.508 4.508 8 H 0.067 0.933 9 C 0.000 4.000 10 N -0.938 5.938 11 Si 0.961 3.039 12 H -0.262 1.262 13 H -0.280 1.280 14 H -0.282 1.282 15 C 0.089 3.911 16 H 0.009 0.991 17 C -0.129 4.129 18 C -0.048 4.048 19 C -0.098 4.098 20 C -0.137 4.137 21 C -0.209 4.209 22 S 0.089 5.911 23 C -0.229 4.229 24 H 0.043 0.957 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.029 0.971 31 H 0.024 0.976 32 H 0.045 0.955 33 H 0.008 0.992 34 H -0.046 1.046 35 H 0.261 0.739 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.029 0.971 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.151 0.849 42 H 0.187 0.813 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.910 -7.253 17.421 19.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 C -0.185 4.185 4 C -0.060 4.060 5 N -0.251 5.251 6 C 0.081 3.919 7 C -0.546 4.546 8 H 0.085 0.915 9 C -0.197 4.197 10 N -0.580 5.580 11 Si 0.787 3.213 12 H -0.186 1.186 13 H -0.206 1.206 14 H -0.208 1.208 15 C -0.020 4.020 16 H 0.027 0.973 17 C -0.187 4.187 18 C -0.087 4.087 19 C -0.111 4.111 20 C -0.167 4.167 21 C -0.344 4.344 22 S 0.353 5.647 23 C -0.364 4.364 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.111 0.889 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.043 0.957 32 H 0.064 0.936 33 H 0.026 0.974 34 H -0.029 1.029 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.048 0.952 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.169 0.831 42 H 0.204 0.796 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.890 -8.472 17.676 20.202 hybrid contribution 0.163 1.413 -1.917 2.387 sum -4.727 -7.059 15.759 17.903 Atomic orbital electron populations 1.21797 0.94488 1.01754 1.01920 1.21463 0.95432 0.96623 0.97865 1.21603 1.01005 0.95746 1.00097 1.22076 0.87605 0.97675 0.98631 1.62111 1.08891 1.34900 1.19162 1.19423 0.93173 0.95309 0.84015 1.21534 1.40497 0.95280 0.97323 0.91495 1.25860 0.95297 1.01202 0.97388 1.70105 1.44793 1.34158 1.08939 0.85445 0.77742 0.79905 0.78243 1.18593 1.20607 1.20760 1.21591 0.96201 0.90020 0.94159 0.97332 1.21744 0.94530 1.01848 1.00565 1.20648 0.99829 0.93894 0.94348 1.19048 0.98009 0.95586 0.98427 1.20289 0.99642 0.99003 0.97812 1.25891 1.06029 0.95748 1.06766 1.84095 1.35046 1.12233 1.33343 1.25602 1.07869 0.96039 1.06874 0.93738 0.92472 0.91053 0.88931 0.91996 0.93490 0.95157 0.95740 0.93607 0.97410 1.02856 0.92989 0.91757 0.91331 0.95209 0.89421 0.90105 0.83122 0.79568 0.82060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.19 71.98 0.66 -2.81 16 2 C -0.10 -2.83 2.43 -10.80 -0.03 -2.85 16 3 C -0.13 -4.05 8.99 71.98 0.65 -3.40 16 4 C 0.07 2.60 3.78 86.30 0.33 2.92 16 5 N -0.53 -22.12 3.82 -875.54 -3.35 -25.47 16 6 C 0.21 11.09 4.53 85.56 0.39 11.47 16 7 C -0.51 -28.74 8.26 25.60 0.21 -28.53 16 8 H 0.07 3.71 7.77 -2.91 -0.02 3.69 16 9 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 10 N -0.94 -57.41 13.29 21.45 0.28 -57.13 16 11 Si 0.96 44.92 29.54 68.60 2.03 46.95 16 12 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 13 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 14 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 15 C 0.09 3.17 2.03 44.92 0.09 3.26 16 16 H 0.01 0.34 8.11 -2.39 -0.02 0.32 16 17 C -0.13 -4.44 8.81 71.98 0.63 -3.80 16 18 C -0.05 -1.30 3.36 29.85 0.10 -1.20 16 19 C -0.10 -2.40 4.29 -20.92 -0.09 -2.49 16 20 C -0.14 -2.92 8.82 21.22 0.19 -2.74 16 21 C -0.21 -3.87 11.23 66.72 0.75 -3.12 16 22 S 0.09 1.77 23.34 -56.49 -1.32 0.45 16 23 C -0.23 -5.40 10.99 66.72 0.73 -4.67 16 24 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 25 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.09 2.49 4.31 -2.39 -0.01 2.48 16 28 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.05 1.68 7.91 -2.39 -0.02 1.66 16 30 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.02 0.89 7.17 -2.39 -0.02 0.87 16 32 H 0.05 2.04 7.00 -2.39 -0.02 2.02 16 33 H 0.01 0.45 6.04 -2.38 -0.01 0.44 16 34 H -0.05 -2.77 8.07 -2.39 -0.02 -2.79 16 35 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 36 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.07 2.03 6.53 -2.39 -0.02 2.02 16 38 H 0.03 1.18 6.35 -2.38 -0.02 1.16 16 39 H 0.09 2.30 7.17 -2.39 -0.02 2.28 16 40 H 0.08 2.16 5.36 -2.38 -0.01 2.15 16 41 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 42 H 0.19 2.38 8.06 -2.91 -0.02 2.36 16 43 H 0.16 3.63 8.06 -2.92 -0.02 3.61 16 Total: -1.00 -63.78 346.60 3.69 -60.09 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.96 Total: 12.60 kcal Atomic # 6 Polarization: -42.57 SS G_CDS: 5.08 Total: -37.49 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -3.06 Total: -82.60 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -1.32 Total: 0.45 kcal Total: -63.78 3.69 -60.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783380554.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.807 kcal (2) G-P(sol) polarization free energy of solvation -63.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds