Wall clock time and date at job start Tue Mar 31 2020 05:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46618 * 2 1 4 4 C 1.52999 * 109.47200 * 119.99756 * 2 1 3 5 5 C 1.53002 * 109.47053 * 175.00225 * 4 2 1 6 6 C 1.52999 * 109.47053 * 180.02562 * 5 4 2 7 7 N 1.46497 * 109.46963 * 180.02562 * 6 5 4 8 8 C 1.39926 * 120.00156 * 179.97438 * 7 6 5 9 9 C 1.38720 * 120.07846 * 359.72887 * 8 7 6 10 10 C 1.38214 * 120.01446 * 179.69905 * 9 8 7 11 11 C 1.38526 * 120.17700 * 0.59332 * 10 9 8 12 12 F 1.35105 * 119.91933 * 179.70124 * 11 10 9 13 13 C 1.38352 * 120.15741 * 359.67812 * 11 10 9 14 14 C 1.38714 * 119.98510 * 0.02562 * 13 11 10 15 15 O 1.35798 * 120.09250 * 180.02562 * 14 13 11 16 16 C 1.34799 * 116.99375 * 354.40483 * 15 14 13 17 17 H 1.07997 * 120.00528 * 5.05792 * 16 15 14 18 18 C 1.38632 * 119.99593 * 185.06092 * 16 15 14 19 19 N 1.31570 * 120.00039 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99998 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46997 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47151 * 119.99707 * 20 18 16 23 23 H 1.48493 * 109.47260 * 240.00053 * 20 18 16 24 24 H 1.09007 * 109.47239 * 299.99925 * 1 2 3 25 25 H 1.09001 * 109.47496 * 60.00399 * 1 2 3 26 26 H 1.09001 * 109.47192 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46726 * 240.00006 * 2 1 3 28 28 H 1.08993 * 109.47813 * 60.00069 * 3 2 1 29 29 H 1.09000 * 109.47013 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47291 * 299.99669 * 3 2 1 31 31 H 1.08995 * 109.47064 * 54.99778 * 4 2 1 32 32 H 1.09002 * 109.46802 * 295.00079 * 4 2 1 33 33 H 1.09003 * 109.46956 * 59.99702 * 5 4 2 34 34 H 1.08996 * 109.46861 * 300.00235 * 5 4 2 35 35 H 1.09002 * 109.46802 * 299.99854 * 6 5 4 36 36 H 1.08995 * 109.47064 * 59.99553 * 6 5 4 37 37 H 0.97005 * 119.99957 * 359.97438 * 7 6 5 38 38 H 1.08003 * 119.98694 * 359.96630 * 9 8 7 39 39 H 1.08005 * 119.90584 * 180.27125 * 10 9 8 40 40 H 1.08004 * 120.00550 * 180.02562 * 13 11 10 41 41 H 0.97010 * 120.00072 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.8309 1.1880 6 6 4.0748 -1.5527 2.4369 7 7 5.5349 -1.6572 2.3785 8 6 6.2337 -2.2824 3.4172 9 6 5.5461 -2.7988 4.5056 10 6 6.2371 -3.4216 5.5278 11 6 7.6178 -3.5214 5.4752 12 9 8.2885 -4.1259 6.4802 13 6 8.3114 -3.0039 4.3958 14 6 7.6240 -2.3829 3.3633 15 8 8.3026 -1.8746 2.3024 16 6 9.6488 -1.9021 2.3671 17 1 10.1397 -2.3885 3.1970 18 6 10.4029 -1.3059 1.3683 19 7 9.8048 -0.7138 0.3571 20 14 12.2685 -1.3434 1.4582 21 1 12.6905 -2.0642 2.6861 22 1 12.8077 -2.0416 0.2638 23 1 12.7902 0.0464 1.4968 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6054 -1.7197 1.2952 32 1 1.7516 -0.1582 2.1369 33 1 3.9994 0.1677 1.1420 34 1 3.8532 -1.3938 0.3003 35 1 3.7864 -0.9901 3.3249 36 1 3.6402 -2.5512 2.4824 37 1 6.0173 -1.2930 1.6198 38 1 4.4701 -2.7180 4.5521 39 1 5.6995 -3.8269 6.3724 40 1 9.3878 -3.0834 4.3571 41 1 10.3326 -0.2969 -0.3420 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783662053.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:49 Heat of formation + Delta-G solvation = -73.823015 kcal Electronic energy + Delta-G solvation = -21457.497282 eV Core-core repulsion = 18058.594472 eV Total energy + Delta-G solvation = -3398.902810 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.03180 -39.19603 -37.47383 -36.46230 -34.78428 -32.30818 -31.38786 -29.24632 -27.82326 -27.30279 -25.38949 -25.05239 -22.43938 -21.20138 -20.83435 -20.02662 -18.16561 -17.51492 -16.11544 -15.85566 -15.64371 -15.13354 -14.84719 -14.61849 -14.47684 -14.18175 -13.82623 -13.69590 -13.56933 -13.25240 -13.09031 -12.59551 -12.37530 -12.13803 -11.99269 -11.76432 -11.58701 -11.43725 -11.36749 -11.12196 -10.82006 -10.74486 -10.59891 -10.50785 -10.48032 -10.37283 -9.56632 -9.20230 -8.85573 -7.72835 -6.48629 -6.41793 -4.03179 2.14018 2.25436 3.11749 3.14330 3.19567 3.92668 4.02631 4.48648 4.68229 4.75912 4.82510 4.98619 5.09030 5.16045 5.24015 5.31055 5.43481 5.49686 5.55348 5.61214 5.63117 5.71364 5.76991 5.81540 5.84907 5.86834 6.04507 6.10378 6.14194 6.14536 6.33109 6.35382 6.48299 6.61033 6.83206 7.04298 7.11750 7.26431 7.63999 7.93304 8.06828 8.44634 8.98609 9.65048 10.69751 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012544 B = 0.004407 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.664296 B = 6352.644307 C = 8471.491992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.151 4.151 4 C -0.110 4.110 5 C -0.133 4.133 6 C 0.133 3.867 7 N -0.746 5.746 8 C 0.154 3.846 9 C -0.147 4.147 10 C -0.195 4.195 11 C 0.084 3.916 12 F -0.158 7.158 13 C -0.241 4.241 14 C 0.121 3.879 15 O -0.177 6.177 16 C -0.386 4.386 17 H 0.092 0.908 18 C 0.040 3.960 19 N -0.864 5.864 20 Si 0.940 3.060 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.276 1.276 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.408 0.592 38 H 0.120 0.880 39 H 0.116 0.884 40 H 0.138 0.862 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.912 0.874 0.958 13.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.208 4.208 4 C -0.148 4.148 5 C -0.171 4.171 6 C 0.008 3.992 7 N -0.381 5.381 8 C 0.052 3.948 9 C -0.171 4.171 10 C -0.215 4.215 11 C 0.063 3.937 12 F -0.137 7.137 13 C -0.262 4.262 14 C 0.066 3.934 15 O -0.081 6.081 16 C -0.462 4.462 17 H 0.109 0.891 18 C -0.164 4.164 19 N -0.499 5.499 20 Si 0.765 3.235 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.244 0.756 38 H 0.138 0.862 39 H 0.134 0.866 40 H 0.155 0.845 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.072 1.081 0.599 14.127 hybrid contribution 1.303 -0.030 0.016 1.303 sum -12.769 1.052 0.615 12.827 Atomic orbital electron populations 1.21844 0.95472 1.01548 1.01562 1.21121 0.95406 0.96563 0.98562 1.21908 1.01681 0.95808 1.01414 1.21553 0.94870 1.00507 0.97842 1.21821 0.95587 1.01508 0.98174 1.21153 0.81484 0.99070 0.97471 1.44369 1.04524 1.65646 1.23525 1.17121 0.88049 0.98856 0.90744 1.19931 0.98512 1.04616 0.94059 1.20294 0.91895 1.08040 1.01257 1.17227 0.89847 0.99864 0.86714 1.91377 1.81082 1.81782 1.59453 1.20790 1.01232 1.08428 0.95779 1.18604 0.89723 0.96180 0.88942 1.83890 1.20626 1.70217 1.33395 1.21344 0.77858 1.37088 1.09924 0.89060 1.25237 1.00420 0.95776 0.94973 1.70030 1.36080 1.33825 1.09999 0.85655 0.80755 0.78399 0.78725 1.19053 1.20169 1.20169 0.92791 0.92904 0.92804 0.91188 0.92799 0.92060 0.93035 0.91862 0.91828 0.90992 0.91321 0.93211 0.93207 0.75578 0.86192 0.86572 0.84465 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.19 37.16 0.34 -0.80 16 2 C -0.10 -0.88 2.92 -90.62 -0.26 -1.15 16 3 C -0.15 -1.39 8.95 37.16 0.33 -1.06 16 4 C -0.11 -1.05 4.68 -26.73 -0.13 -1.17 16 5 C -0.13 -1.57 5.08 -26.73 -0.14 -1.71 16 6 C 0.13 1.84 4.92 -4.04 -0.02 1.82 16 7 N -0.75 -13.67 5.73 -58.46 -0.34 -14.01 16 8 C 0.15 3.17 6.67 -83.52 -0.56 2.61 16 9 C -0.15 -2.66 9.31 -39.41 -0.37 -3.03 16 10 C -0.19 -3.59 10.02 -39.48 -0.40 -3.98 16 11 C 0.08 1.75 7.29 -39.43 -0.29 1.46 16 12 F -0.16 -3.17 17.26 2.25 0.04 -3.13 16 13 C -0.24 -5.49 9.14 -39.36 -0.36 -5.85 16 14 C 0.12 2.88 6.66 -38.94 -0.26 2.62 16 15 O -0.18 -4.82 9.00 -0.01 0.00 -4.82 16 16 C -0.39 -10.61 9.49 30.88 0.29 -10.31 16 17 H 0.09 2.38 5.21 -52.49 -0.27 2.11 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -24.49 13.67 55.48 0.76 -23.73 16 20 Si 0.94 20.45 29.55 -169.99 -5.02 15.43 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 24 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.62 6.57 -51.93 -0.34 0.28 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.89 6.57 -51.93 -0.34 0.55 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.05 0.66 7.94 -51.93 -0.41 0.25 16 36 H 0.05 0.66 7.96 -51.93 -0.41 0.24 16 37 H 0.41 8.16 7.84 -40.82 -0.32 7.84 16 38 H 0.12 1.81 6.73 -52.48 -0.35 1.46 16 39 H 0.12 1.82 8.06 -52.48 -0.42 1.40 16 40 H 0.14 3.17 5.64 -52.48 -0.30 2.88 16 41 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 340.46 15.07 5.13 5.13 Total: -1.00 -28.82 340.46 -7.44 -36.27 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -6.11 Total: 8.44 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -1.90 Total: -19.58 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.42 Total: -37.74 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: 0.00 Total: -4.82 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.04 Total: -3.13 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.82 -7.44 -36.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783662053.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.554 kcal (2) G-P(sol) polarization free energy of solvation -28.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds