Wall clock time and date at job start Tue Mar 31 2020 05:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46618 * 2 1 4 4 C 1.52999 * 109.47200 * 119.99756 * 2 1 3 5 5 C 1.53002 * 109.47053 * 175.00225 * 4 2 1 6 6 C 1.52999 * 109.47053 * 180.02562 * 5 4 2 7 7 N 1.46497 * 109.46963 * 180.02562 * 6 5 4 8 8 C 1.39926 * 120.00156 * 179.97438 * 7 6 5 9 9 C 1.38720 * 120.07846 * 359.72887 * 8 7 6 10 10 C 1.38214 * 120.01446 * 179.69905 * 9 8 7 11 11 C 1.38526 * 120.17700 * 0.59332 * 10 9 8 12 12 F 1.35105 * 119.91933 * 179.70124 * 11 10 9 13 13 C 1.38352 * 120.15741 * 359.67812 * 11 10 9 14 14 C 1.38714 * 119.98510 * 0.02562 * 13 11 10 15 15 O 1.35798 * 120.09250 * 180.02562 * 14 13 11 16 16 C 1.34799 * 116.99375 * 354.40483 * 15 14 13 17 17 H 1.07997 * 120.00528 * 5.05792 * 16 15 14 18 18 C 1.38632 * 119.99593 * 185.06092 * 16 15 14 19 19 N 1.31570 * 120.00039 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99998 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46997 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47151 * 119.99707 * 20 18 16 23 23 H 1.48493 * 109.47260 * 240.00053 * 20 18 16 24 24 H 1.09007 * 109.47239 * 299.99925 * 1 2 3 25 25 H 1.09001 * 109.47496 * 60.00399 * 1 2 3 26 26 H 1.09001 * 109.47192 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46726 * 240.00006 * 2 1 3 28 28 H 1.08993 * 109.47813 * 60.00069 * 3 2 1 29 29 H 1.09000 * 109.47013 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47291 * 299.99669 * 3 2 1 31 31 H 1.08995 * 109.47064 * 54.99778 * 4 2 1 32 32 H 1.09002 * 109.46802 * 295.00079 * 4 2 1 33 33 H 1.09003 * 109.46956 * 59.99702 * 5 4 2 34 34 H 1.08996 * 109.46861 * 300.00235 * 5 4 2 35 35 H 1.09002 * 109.46802 * 299.99854 * 6 5 4 36 36 H 1.08995 * 109.47064 * 59.99553 * 6 5 4 37 37 H 0.97005 * 119.99957 * 359.97438 * 7 6 5 38 38 H 1.08003 * 119.98694 * 359.96630 * 9 8 7 39 39 H 1.08005 * 119.90584 * 180.27125 * 10 9 8 40 40 H 1.08004 * 120.00550 * 180.02562 * 13 11 10 41 41 H 0.97010 * 120.00072 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.8309 1.1880 6 6 4.0748 -1.5527 2.4369 7 7 5.5349 -1.6572 2.3785 8 6 6.2337 -2.2824 3.4172 9 6 5.5461 -2.7988 4.5056 10 6 6.2371 -3.4216 5.5278 11 6 7.6178 -3.5214 5.4752 12 9 8.2885 -4.1259 6.4802 13 6 8.3114 -3.0039 4.3958 14 6 7.6240 -2.3829 3.3633 15 8 8.3026 -1.8746 2.3024 16 6 9.6488 -1.9021 2.3671 17 1 10.1397 -2.3885 3.1970 18 6 10.4029 -1.3059 1.3683 19 7 9.8048 -0.7138 0.3571 20 14 12.2685 -1.3434 1.4582 21 1 12.6905 -2.0642 2.6861 22 1 12.8077 -2.0416 0.2638 23 1 12.7902 0.0464 1.4968 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6054 -1.7197 1.2952 32 1 1.7516 -0.1582 2.1369 33 1 3.9994 0.1677 1.1420 34 1 3.8532 -1.3938 0.3003 35 1 3.7864 -0.9901 3.3249 36 1 3.6402 -2.5512 2.4824 37 1 6.0173 -1.2930 1.6198 38 1 4.4701 -2.7180 4.5521 39 1 5.6995 -3.8269 6.3724 40 1 9.3878 -3.0834 4.3571 41 1 10.3326 -0.2969 -0.3420 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783662053.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:48 Heat of formation + Delta-G solvation = -89.335541 kcal Electronic energy + Delta-G solvation = -21458.169956 eV Core-core repulsion = 18058.594472 eV Total energy + Delta-G solvation = -3399.575483 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.63735 -40.88593 -38.63170 -37.88607 -36.08694 -34.27217 -32.52988 -30.92342 -29.21857 -27.99354 -27.32522 -26.19954 -23.85472 -22.72342 -22.17542 -20.79138 -20.00286 -19.25274 -17.65217 -17.32635 -16.93330 -16.66309 -16.41406 -15.97251 -15.69964 -15.57447 -15.28657 -15.13444 -15.01471 -14.61373 -14.31532 -13.79575 -13.65924 -13.53224 -13.18828 -13.02730 -12.93331 -12.62686 -12.53755 -12.44733 -12.16378 -12.01775 -11.95376 -11.57315 -11.45788 -11.36213 -11.33154 -10.80602 -10.66038 -9.43441 -8.47243 -8.01629 -6.09500 0.48941 0.61880 1.35189 1.41490 1.51704 2.16033 2.63227 2.77652 3.10725 3.34233 3.64606 3.82514 3.98534 4.02132 4.07364 4.25095 4.26982 4.33292 4.53421 4.57715 4.66800 4.78326 4.80627 4.85486 4.90072 4.96838 5.02927 5.05429 5.12238 5.13472 5.25249 5.28856 5.33823 5.39953 5.44191 5.47193 5.53583 5.56592 5.96974 6.05428 6.57952 6.84085 6.98770 7.75590 8.74963 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012544 B = 0.004407 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.664296 B = 6352.644307 C = 8471.491992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 C -0.151 4.151 4 C -0.102 4.102 5 C -0.127 4.127 6 C 0.130 3.870 7 N -0.750 5.750 8 C 0.151 3.849 9 C -0.137 4.137 10 C -0.163 4.163 11 C 0.063 3.937 12 F -0.155 7.155 13 C -0.247 4.247 14 C 0.079 3.921 15 O -0.216 6.216 16 C -0.409 4.409 17 H 0.093 0.907 18 C -0.015 4.015 19 N -0.912 5.912 20 Si 1.011 2.989 21 H -0.259 1.259 22 H -0.268 1.268 23 H -0.268 1.268 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.396 0.604 38 H 0.162 0.838 39 H 0.158 0.842 40 H 0.121 0.879 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.009 0.293 2.496 16.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 C -0.209 4.209 4 C -0.140 4.140 5 C -0.165 4.165 6 C 0.007 3.993 7 N -0.381 5.381 8 C 0.048 3.952 9 C -0.160 4.160 10 C -0.183 4.183 11 C 0.042 3.958 12 F -0.134 7.134 13 C -0.268 4.268 14 C 0.026 3.974 15 O -0.123 6.123 16 C -0.485 4.485 17 H 0.110 0.890 18 C -0.213 4.213 19 N -0.550 5.550 20 Si 0.831 3.169 21 H -0.182 1.182 22 H -0.193 1.193 23 H -0.193 1.193 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.229 0.771 38 H 0.180 0.820 39 H 0.175 0.825 40 H 0.139 0.861 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.228 0.482 2.174 16.380 hybrid contribution 1.718 0.079 -0.305 1.746 sum -14.510 0.561 1.869 14.641 Atomic orbital electron populations 1.21811 0.94165 1.02081 1.02047 1.21124 0.96463 0.96106 0.98063 1.21911 1.00697 0.96300 1.01960 1.21512 0.92737 1.01348 0.98428 1.21769 0.97344 1.00429 0.96937 1.21440 0.78663 1.00367 0.98880 1.44666 1.06330 1.64710 1.22426 1.17477 0.87191 0.98535 0.91962 1.20403 1.00415 1.02795 0.92425 1.20806 0.90788 1.04964 1.01747 1.17331 0.90928 1.01022 0.86528 1.91380 1.81265 1.81742 1.59054 1.20849 1.00801 1.08547 0.96619 1.19086 0.91288 0.97802 0.89202 1.83857 1.20478 1.72583 1.35400 1.21704 0.78695 1.37711 1.10429 0.89008 1.26361 1.05408 0.95185 0.94358 1.70148 1.38027 1.35710 1.11141 0.84627 0.74380 0.78776 0.79088 1.18245 1.19256 1.19293 0.92266 0.92512 0.92244 0.91899 0.92292 0.93589 0.92494 0.90811 0.90953 0.92090 0.92383 0.91747 0.91636 0.77060 0.82027 0.82479 0.86084 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.19 71.98 0.66 -1.26 16 2 C -0.10 -1.64 2.92 -10.79 -0.03 -1.67 16 3 C -0.15 -2.65 8.95 71.98 0.64 -2.01 16 4 C -0.10 -1.72 4.68 30.59 0.14 -1.58 16 5 C -0.13 -2.87 5.08 30.59 0.16 -2.71 16 6 C 0.13 3.28 4.92 86.38 0.42 3.71 16 7 N -0.75 -27.22 5.73 -338.87 -1.94 -29.16 16 8 C 0.15 6.12 6.67 38.27 0.26 6.37 16 9 C -0.14 -4.45 9.31 22.38 0.21 -4.24 16 10 C -0.16 -5.38 10.02 22.33 0.22 -5.15 16 11 C 0.06 2.52 7.29 22.37 0.16 2.68 16 12 F -0.16 -6.00 17.26 44.97 0.78 -5.22 16 13 C -0.25 -11.50 9.14 22.41 0.20 -11.30 16 14 C 0.08 3.88 6.66 22.69 0.15 4.03 16 15 O -0.22 -12.46 9.00 -22.95 -0.21 -12.66 16 16 C -0.41 -23.66 9.49 67.91 0.64 -23.02 16 17 H 0.09 5.07 5.21 -2.91 -0.02 5.05 16 18 C -0.01 -0.83 5.49 84.83 0.47 -0.37 16 19 N -0.91 -54.11 13.67 21.61 0.30 -53.81 16 20 Si 1.01 43.13 29.55 68.60 2.03 45.16 16 21 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 22 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 23 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 24 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.05 0.93 6.57 -2.39 -0.02 0.92 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.06 1.51 6.57 -2.39 -0.02 1.50 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.06 1.48 7.94 -2.39 -0.02 1.46 16 36 H 0.07 1.49 7.96 -2.39 -0.02 1.47 16 37 H 0.40 16.44 7.84 -92.70 -0.73 15.72 16 38 H 0.16 3.94 6.73 -2.91 -0.02 3.92 16 39 H 0.16 3.97 8.06 -2.91 -0.02 3.95 16 40 H 0.12 5.89 5.64 -2.91 -0.02 5.87 16 41 H 0.27 14.82 8.31 -92.70 -0.77 14.05 16 Total: -1.00 -65.47 340.46 5.57 -59.90 By element: Atomic # 1 Polarization: 32.00 SS G_CDS: 0.30 Total: 32.31 kcal Atomic # 6 Polarization: -40.82 SS G_CDS: 4.31 Total: -36.51 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -1.65 Total: -82.98 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: -0.21 Total: -12.66 kcal Atomic # 9 Polarization: -6.00 SS G_CDS: 0.78 Total: -5.22 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -65.47 5.57 -59.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783662053.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.432 kcal (2) G-P(sol) polarization free energy of solvation -65.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds