Wall clock time and date at job start Tue Mar 31 2020 05:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47205 * 2 1 4 4 C 1.50700 * 109.46909 * 120.00335 * 2 1 3 5 5 N 1.30825 * 125.96133 * 145.30747 * 4 2 1 6 6 C 1.33242 * 109.82850 * 180.11877 * 5 4 2 7 7 C 1.50700 * 125.52870 * 179.85163 * 6 5 4 8 8 H 1.09001 * 109.47042 * 344.72123 * 7 6 5 9 9 C 1.52997 * 109.47132 * 104.71905 * 7 6 5 10 10 N 1.46504 * 109.47198 * 224.71723 * 7 6 5 11 11 C 1.34777 * 119.99854 * 154.99672 * 10 7 6 12 12 O 1.21593 * 119.99953 * 0.02562 * 11 10 7 13 13 N 1.34773 * 120.00097 * 180.27545 * 11 10 7 14 14 C 1.46500 * 120.00431 * 179.72742 * 13 11 10 15 15 C 1.50698 * 109.47467 * 180.02562 * 14 13 11 16 16 H 1.08001 * 120.00089 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00007 * 179.97438 * 15 14 13 18 18 N 1.31522 * 120.00198 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00191 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47109 * 60.00141 * 19 17 15 21 21 H 1.48496 * 109.47268 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47190 * 300.00363 * 19 17 15 23 23 N 1.30721 * 108.94607 * 359.59016 * 6 5 4 24 24 N 1.34432 * 125.95937 * 324.96749 * 4 2 1 25 25 H 0.97007 * 126.82311 * 0.08089 * 24 4 2 26 26 H 1.08996 * 109.46966 * 300.00207 * 1 2 3 27 27 H 1.09004 * 109.46336 * 59.99670 * 1 2 3 28 28 H 1.08998 * 109.46959 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46966 * 239.99793 * 2 1 3 30 30 H 1.08996 * 109.46909 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47316 * 299.99948 * 3 2 1 32 32 H 1.09001 * 109.46649 * 59.99996 * 3 2 1 33 33 H 1.08998 * 109.47338 * 300.00052 * 9 7 6 34 34 H 1.09001 * 109.46979 * 60.00180 * 9 7 6 35 35 H 1.09000 * 109.47470 * 179.97438 * 9 7 6 36 36 H 0.97000 * 120.00410 * 335.00397 * 10 7 6 37 37 H 0.97000 * 120.00112 * 359.73180 * 13 11 10 38 38 H 1.09009 * 109.46712 * 300.00517 * 14 13 11 39 39 H 1.08998 * 109.47207 * 59.99494 * 14 13 11 40 40 H 0.96995 * 120.00094 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 3.1093 -1.4495 1.3050 6 6 3.2475 -1.9233 2.5427 7 6 4.3639 -2.8165 3.0189 8 1 4.8854 -3.2363 2.1586 9 6 5.3458 -2.0003 3.8618 10 7 3.8084 -3.9021 3.8308 11 6 4.4766 -5.0668 3.9466 12 8 5.5407 -5.2164 3.3777 13 7 3.9628 -6.0674 4.6890 14 6 4.6862 -7.3356 4.8101 15 6 3.9035 -8.2787 5.6871 16 1 2.9616 -7.9647 6.1121 17 6 4.3898 -9.5424 5.9468 18 7 5.5366 -9.9250 5.4288 19 14 3.4200 -10.7112 7.0344 20 1 2.0860 -10.9574 6.4304 21 1 4.1532 -11.9966 7.1570 22 1 3.2501 -10.1084 8.3809 23 7 2.2606 -1.4832 3.2783 24 7 1.4554 -0.6902 2.4445 25 1 0.6438 -0.2216 2.6948 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 3.1300 1.4424 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 5.7591 -1.1926 3.2578 34 1 4.8243 -1.5804 4.7221 35 1 6.1531 -2.6464 4.2067 36 1 2.9596 -3.7826 4.2849 37 1 3.1141 -5.9480 5.1432 38 1 4.8113 -7.7783 3.8219 39 1 5.6653 -7.1546 5.2536 40 1 5.8789 -10.8139 5.6118 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787348982.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:18 Heat of formation + Delta-G solvation = 36.588031 kcal Electronic energy + Delta-G solvation = -21396.357141 eV Core-core repulsion = 18054.454827 eV Total energy + Delta-G solvation = -3341.902315 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.48039 -39.22472 -36.48363 -35.21499 -33.95604 -32.69536 -32.26246 -30.78882 -29.62164 -27.76902 -26.90835 -24.57716 -23.84174 -22.45019 -20.71493 -20.30587 -19.88088 -18.35691 -17.73749 -16.27675 -16.01843 -15.74565 -15.54133 -14.79774 -14.67133 -14.46608 -14.12223 -13.66824 -13.54712 -12.99301 -12.93489 -12.78867 -12.61532 -12.08441 -11.95663 -11.88318 -11.80714 -11.73314 -11.48272 -11.27138 -10.92983 -10.82920 -10.31135 -10.25599 -10.23420 -9.75812 -9.34371 -9.32565 -8.77126 -8.64670 -7.70437 -6.10052 -4.16339 1.33170 2.33774 2.57686 3.27953 3.29537 3.34321 3.36843 3.68888 4.00206 4.19728 4.28504 4.37513 4.46177 4.75813 4.82943 4.99253 5.15784 5.18366 5.23904 5.25739 5.37332 5.39690 5.46796 5.59239 5.67128 5.76042 5.98237 6.03651 6.14371 6.37055 6.75115 6.87663 7.18537 7.57838 7.61234 7.63969 7.87352 7.97161 8.10465 8.82113 9.00201 9.38773 9.53688 11.00182 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.031556 B = 0.002872 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.103033 B = 9745.545483 C =10188.820527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.018 4.018 3 C -0.145 4.145 4 C 0.290 3.710 5 N -0.527 5.527 6 C 0.231 3.769 7 C 0.259 3.741 8 H 0.114 0.886 9 C -0.156 4.156 10 N -0.750 5.750 11 C 0.697 3.303 12 O -0.598 6.598 13 N -0.728 5.728 14 C 0.267 3.733 15 C -0.541 4.541 16 H 0.062 0.938 17 C 0.063 3.937 18 N -0.886 5.886 19 Si 0.904 3.096 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.276 1.276 23 N -0.305 5.305 24 N -0.480 5.480 25 H 0.438 0.562 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.111 0.889 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.395 0.605 37 H 0.386 0.614 38 H 0.025 0.975 39 H 0.026 0.974 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.315 24.033 -9.089 28.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.040 4.040 3 C -0.203 4.203 4 C 0.011 3.989 5 N -0.256 5.256 6 C -0.053 4.053 7 C 0.150 3.850 8 H 0.132 0.868 9 C -0.215 4.215 10 N -0.408 5.408 11 C 0.397 3.603 12 O -0.477 6.477 13 N -0.380 5.380 14 C 0.146 3.854 15 C -0.580 4.580 16 H 0.080 0.920 17 C -0.140 4.140 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 N -0.134 5.134 24 N -0.198 5.198 25 H 0.284 0.716 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.129 0.871 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.229 0.771 37 H 0.218 0.782 38 H 0.043 0.957 39 H 0.044 0.956 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.966 23.376 -9.117 26.997 hybrid contribution -1.992 -0.160 1.105 2.283 sum -11.958 23.216 -8.012 27.316 Atomic orbital electron populations 1.21937 0.93257 1.03018 1.03024 1.19837 0.95986 0.95888 0.92241 1.21852 1.02387 0.93458 1.02631 1.24336 0.90076 0.95453 0.89019 1.70354 1.18361 1.15883 1.20967 1.24384 0.95632 0.97599 0.87641 1.18754 0.87352 0.83941 0.94961 0.86795 1.22174 0.99457 1.00073 0.99820 1.45148 1.26360 1.13932 1.55337 1.16059 0.83907 0.79751 0.80613 1.90876 1.22747 1.81923 1.52110 1.45707 1.25523 1.15264 1.51506 1.18984 0.92048 0.77193 0.97147 1.21199 1.06905 0.98626 1.31260 0.92035 1.24939 0.95096 0.97929 0.96063 1.69972 1.18833 1.19864 1.43640 0.86476 0.79817 0.79880 0.80709 1.20143 1.21094 1.20120 1.77975 1.06463 1.12350 1.16630 1.47953 1.24033 1.40146 1.07658 0.71613 0.92548 0.90468 0.91680 0.87070 0.91439 0.90862 0.92526 0.91734 0.92242 0.90289 0.77106 0.78161 0.95684 0.95640 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 8.95 37.16 0.33 -0.26 16 2 C -0.02 -0.11 3.39 -91.77 -0.31 -0.42 16 3 C -0.14 -0.68 9.18 37.16 0.34 -0.33 16 4 C 0.29 2.89 6.95 -155.70 -1.08 1.80 16 5 N -0.53 -7.18 11.19 -8.16 -0.09 -7.27 16 6 C 0.23 3.31 6.95 -156.85 -1.09 2.22 16 7 C 0.26 4.04 3.12 -69.08 -0.22 3.82 16 8 H 0.11 1.98 7.58 -51.93 -0.39 1.59 16 9 C -0.16 -2.16 9.47 37.16 0.35 -1.81 16 10 N -0.75 -12.70 5.07 -59.81 -0.30 -13.00 16 11 C 0.70 15.11 8.53 -86.92 -0.74 14.37 16 12 O -0.60 -15.22 16.01 5.28 0.08 -15.14 16 13 N -0.73 -16.32 5.55 -66.41 -0.37 -16.69 16 14 C 0.27 7.35 5.43 -5.19 -0.03 7.32 16 15 C -0.54 -15.08 9.28 -34.44 -0.32 -15.40 16 16 H 0.06 1.60 7.60 -52.49 -0.40 1.21 16 17 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 18 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 19 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 N -0.31 -3.98 12.46 32.42 0.40 -3.57 16 24 N -0.48 -4.54 7.21 32.62 0.24 -4.30 16 25 H 0.44 2.57 8.21 -182.33 -1.50 1.08 16 26 H 0.06 0.15 7.46 -51.93 -0.39 -0.23 16 27 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.40 5.96 8.34 -40.82 -0.34 5.62 16 37 H 0.39 7.53 8.34 -40.82 -0.34 7.19 16 38 H 0.03 0.76 8.14 -51.92 -0.42 0.34 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 343.70 15.07 5.18 5.18 Total: -1.00 -35.10 343.70 -9.15 -44.24 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -7.14 Total: 7.13 kcal Atomic # 6 Polarization: 15.87 SS G_CDS: -2.86 Total: 13.01 kcal Atomic # 7 Polarization: -71.28 SS G_CDS: 0.61 Total: -70.67 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: 0.08 Total: -15.14 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.10 -9.15 -44.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787348982.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.833 kcal (2) G-P(sol) polarization free energy of solvation -35.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds