Wall clock time and date at job start Tue Mar 31 2020 05:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47205 * 2 1 4 4 C 1.50700 * 109.46909 * 120.00335 * 2 1 3 5 5 N 1.30825 * 125.96133 * 145.30747 * 4 2 1 6 6 C 1.33242 * 109.82850 * 180.11877 * 5 4 2 7 7 C 1.50700 * 125.52870 * 179.85163 * 6 5 4 8 8 H 1.09001 * 109.47042 * 344.72123 * 7 6 5 9 9 C 1.52997 * 109.47132 * 104.71905 * 7 6 5 10 10 N 1.46504 * 109.47198 * 224.71723 * 7 6 5 11 11 C 1.34777 * 119.99854 * 154.99672 * 10 7 6 12 12 O 1.21593 * 119.99953 * 0.02562 * 11 10 7 13 13 N 1.34773 * 120.00097 * 180.27545 * 11 10 7 14 14 C 1.46500 * 120.00431 * 179.72742 * 13 11 10 15 15 C 1.50698 * 109.47467 * 180.02562 * 14 13 11 16 16 H 1.08001 * 120.00089 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00007 * 179.97438 * 15 14 13 18 18 N 1.31522 * 120.00198 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00191 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47109 * 60.00141 * 19 17 15 21 21 H 1.48496 * 109.47268 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47190 * 300.00363 * 19 17 15 23 23 N 1.30721 * 108.94607 * 359.59016 * 6 5 4 24 24 N 1.34432 * 125.95937 * 324.96749 * 4 2 1 25 25 H 0.97007 * 126.82311 * 0.08089 * 24 4 2 26 26 H 1.08996 * 109.46966 * 300.00207 * 1 2 3 27 27 H 1.09004 * 109.46336 * 59.99670 * 1 2 3 28 28 H 1.08998 * 109.46959 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46966 * 239.99793 * 2 1 3 30 30 H 1.08996 * 109.46909 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47316 * 299.99948 * 3 2 1 32 32 H 1.09001 * 109.46649 * 59.99996 * 3 2 1 33 33 H 1.08998 * 109.47338 * 300.00052 * 9 7 6 34 34 H 1.09001 * 109.46979 * 60.00180 * 9 7 6 35 35 H 1.09000 * 109.47470 * 179.97438 * 9 7 6 36 36 H 0.97000 * 120.00410 * 335.00397 * 10 7 6 37 37 H 0.97000 * 120.00112 * 359.73180 * 13 11 10 38 38 H 1.09009 * 109.46712 * 300.00517 * 14 13 11 39 39 H 1.08998 * 109.47207 * 59.99494 * 14 13 11 40 40 H 0.96995 * 120.00094 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 3.1093 -1.4495 1.3050 6 6 3.2475 -1.9233 2.5427 7 6 4.3639 -2.8165 3.0189 8 1 4.8854 -3.2363 2.1586 9 6 5.3458 -2.0003 3.8618 10 7 3.8084 -3.9021 3.8308 11 6 4.4766 -5.0668 3.9466 12 8 5.5407 -5.2164 3.3777 13 7 3.9628 -6.0674 4.6890 14 6 4.6862 -7.3356 4.8101 15 6 3.9035 -8.2787 5.6871 16 1 2.9616 -7.9647 6.1121 17 6 4.3898 -9.5424 5.9468 18 7 5.5366 -9.9250 5.4288 19 14 3.4200 -10.7112 7.0344 20 1 2.0860 -10.9574 6.4304 21 1 4.1532 -11.9966 7.1570 22 1 3.2501 -10.1084 8.3809 23 7 2.2606 -1.4832 3.2783 24 7 1.4554 -0.6902 2.4445 25 1 0.6438 -0.2216 2.6948 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 3.1300 1.4424 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 5.7591 -1.1926 3.2578 34 1 4.8243 -1.5804 4.7221 35 1 6.1531 -2.6464 4.2067 36 1 2.9596 -3.7826 4.2849 37 1 3.1141 -5.9480 5.1432 38 1 4.8113 -7.7783 3.8219 39 1 5.6653 -7.1546 5.2536 40 1 5.8789 -10.8139 5.6118 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787348982.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:17 Heat of formation + Delta-G solvation = 9.842181 kcal Electronic energy + Delta-G solvation = -21397.516929 eV Core-core repulsion = 18054.454827 eV Total energy + Delta-G solvation = -3343.062102 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.40271 -40.96478 -37.46290 -36.35239 -35.87263 -34.41324 -33.60882 -32.02929 -30.74088 -28.95508 -28.09179 -25.73340 -24.89038 -24.20265 -21.93389 -21.53515 -21.09202 -19.94390 -18.79111 -18.05113 -17.52678 -16.81280 -16.65566 -16.29261 -16.25690 -15.76648 -15.13505 -15.07274 -14.65610 -14.49430 -14.02849 -13.99963 -13.73223 -13.44151 -13.16253 -13.01924 -12.89358 -12.68188 -12.57178 -12.47073 -12.22235 -12.21193 -11.92266 -11.48692 -11.32645 -11.23705 -11.18601 -10.78264 -10.65753 -10.36706 -9.66035 -8.26719 -6.43165 0.43042 1.42785 1.48444 1.48813 1.55840 1.56975 1.92402 2.21130 2.40139 2.75783 3.07836 3.35223 3.50933 3.65457 3.97919 4.08482 4.12991 4.30017 4.39034 4.61316 4.72372 4.79987 4.84569 4.91590 5.00839 5.07606 5.10211 5.12016 5.21109 5.29106 5.29496 5.33046 5.41666 5.49167 5.66338 5.85924 6.09024 6.19656 6.67668 6.94879 7.23007 7.27591 7.67702 8.85421 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.031556 B = 0.002872 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.103033 B = 9745.545483 C =10188.820527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.017 4.017 3 C -0.141 4.141 4 C 0.299 3.701 5 N -0.563 5.563 6 C 0.218 3.782 7 C 0.258 3.742 8 H 0.091 0.909 9 C -0.146 4.146 10 N -0.727 5.727 11 C 0.698 3.302 12 O -0.639 6.639 13 N -0.722 5.722 14 C 0.286 3.714 15 C -0.556 4.556 16 H 0.082 0.918 17 C 0.004 3.996 18 N -0.930 5.930 19 Si 0.986 3.014 20 H -0.263 1.263 21 H -0.284 1.284 22 H -0.262 1.262 23 N -0.316 5.316 24 N -0.464 5.464 25 H 0.456 0.544 26 H 0.070 0.930 27 H 0.096 0.904 28 H 0.054 0.946 29 H 0.108 0.892 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.408 0.592 37 H 0.403 0.597 38 H -0.013 1.013 39 H -0.011 1.011 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.245 25.577 -8.586 30.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.038 4.038 3 C -0.199 4.199 4 C 0.021 3.979 5 N -0.292 5.292 6 C -0.065 4.065 7 C 0.150 3.850 8 H 0.109 0.891 9 C -0.205 4.205 10 N -0.385 5.385 11 C 0.398 3.602 12 O -0.521 6.521 13 N -0.375 5.375 14 C 0.163 3.837 15 C -0.594 4.594 16 H 0.100 0.900 17 C -0.195 4.195 18 N -0.568 5.568 19 Si 0.809 3.191 20 H -0.188 1.188 21 H -0.210 1.210 22 H -0.187 1.187 23 N -0.146 5.146 24 N -0.184 5.184 25 H 0.305 0.695 26 H 0.089 0.911 27 H 0.115 0.885 28 H 0.073 0.927 29 H 0.126 0.874 30 H 0.069 0.931 31 H 0.114 0.886 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.244 0.756 37 H 0.238 0.762 38 H 0.005 0.995 39 H 0.007 0.993 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.978 25.007 -8.606 29.459 hybrid contribution -1.106 -0.509 0.849 1.484 sum -14.084 24.498 -7.757 29.303 Atomic orbital electron populations 1.21950 0.91216 1.02912 1.04803 1.20070 0.97528 0.96122 0.90083 1.21845 1.01319 0.92599 1.04145 1.25043 0.88762 0.94061 0.90031 1.70312 1.20435 1.17493 1.20961 1.23953 0.95859 0.98366 0.88358 1.18725 0.88367 0.83750 0.94202 0.89106 1.22068 0.98443 0.99842 1.00149 1.44892 1.26209 1.12650 1.54751 1.16136 0.83526 0.80578 0.79969 1.90848 1.24756 1.82841 1.53609 1.45313 1.25941 1.14114 1.52158 1.18440 0.91291 0.79159 0.94830 1.21562 1.07622 0.98950 1.31286 0.89986 1.26059 0.96067 0.99968 0.97454 1.70137 1.20885 1.20588 1.45208 0.85191 0.78256 0.76899 0.78744 1.18773 1.20965 1.18688 1.77863 1.06484 1.12889 1.17412 1.47854 1.24107 1.39312 1.07120 0.69509 0.91055 0.88502 0.92701 0.87365 0.93124 0.88595 0.91787 0.89953 0.91156 0.92289 0.75593 0.76153 0.99514 0.99284 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 8.95 71.98 0.64 -0.06 16 2 C -0.02 -0.16 3.39 -11.54 -0.04 -0.20 16 3 C -0.14 -0.97 9.18 71.98 0.66 -0.31 16 4 C 0.30 5.50 6.95 138.23 0.96 6.46 16 5 N -0.56 -15.07 11.19 -179.72 -2.01 -17.08 16 6 C 0.22 6.16 6.95 138.63 0.96 7.12 16 7 C 0.26 8.18 3.12 44.24 0.14 8.31 16 8 H 0.09 3.32 7.58 -2.39 -0.02 3.30 16 9 C -0.15 -4.06 9.47 71.98 0.68 -3.38 16 10 N -0.73 -24.81 5.07 -461.40 -2.34 -27.15 16 11 C 0.70 31.16 8.53 179.06 1.53 32.68 16 12 O -0.64 -34.11 16.01 -4.01 -0.06 -34.18 16 13 N -0.72 -32.98 5.55 -482.29 -2.68 -35.66 16 14 C 0.29 16.35 5.43 85.63 0.46 16.81 16 15 C -0.56 -31.14 9.28 25.60 0.24 -30.90 16 16 H 0.08 4.16 7.60 -2.91 -0.02 4.13 16 17 C 0.00 0.24 5.46 84.65 0.46 0.70 16 18 N -0.93 -57.06 13.29 21.45 0.28 -56.77 16 19 Si 0.99 43.12 29.54 68.60 2.03 45.15 16 20 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 23 N -0.32 -7.80 12.46 -51.33 -0.64 -8.43 16 24 N -0.46 -7.81 7.21 -50.71 -0.37 -8.17 16 25 H 0.46 4.07 8.21 -213.09 -1.75 2.32 16 26 H 0.07 0.13 7.46 -2.39 -0.02 0.11 16 27 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 28 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.41 11.97 8.34 -92.71 -0.77 11.20 16 37 H 0.40 15.51 8.34 -92.71 -0.77 14.74 16 38 H -0.01 -0.84 8.14 -2.38 -0.02 -0.86 16 39 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 40 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -78.50 343.70 -1.30 -79.80 By element: Atomic # 1 Polarization: 27.46 SS G_CDS: -2.22 Total: 25.25 kcal Atomic # 6 Polarization: 30.55 SS G_CDS: 6.70 Total: 37.25 kcal Atomic # 7 Polarization: -145.52 SS G_CDS: -7.75 Total: -153.27 kcal Atomic # 8 Polarization: -34.11 SS G_CDS: -0.06 Total: -34.18 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -78.50 -1.30 -79.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787348982.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.647 kcal (2) G-P(sol) polarization free energy of solvation -78.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds