Wall clock time and date at job start Tue Mar 31 2020 05:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99540 * 2 1 3 5 5 N 1.30833 * 125.95772 * 144.71463 * 4 2 1 6 6 C 1.33240 * 109.82343 * 179.86824 * 5 4 2 7 7 C 1.50706 * 125.52456 * 180.12713 * 6 5 4 8 8 H 1.08997 * 109.47100 * 15.29752 * 7 6 5 9 9 C 1.53001 * 109.47160 * 255.29441 * 7 6 5 10 10 N 1.46501 * 109.46734 * 135.29798 * 7 6 5 11 11 C 1.34779 * 119.99498 * 205.00236 * 10 7 6 12 12 O 1.21587 * 120.00270 * 359.97438 * 11 10 7 13 13 N 1.34778 * 119.99680 * 180.02562 * 11 10 7 14 14 C 1.46501 * 119.99823 * 179.97438 * 13 11 10 15 15 C 1.50700 * 109.47124 * 180.02562 * 14 13 11 16 16 H 1.07995 * 120.00127 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00033 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00108 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00197 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47264 * 89.99650 * 19 17 15 21 21 H 1.48501 * 109.47486 * 209.99672 * 19 17 15 22 22 H 1.48499 * 109.47185 * 330.00123 * 19 17 15 23 23 N 1.30710 * 108.94830 * 0.40598 * 6 5 4 24 24 N 1.34426 * 125.96210 * 325.02819 * 4 2 1 25 25 H 0.97003 * 126.82048 * 0.02562 * 24 4 2 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 31 31 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 33 33 H 1.08997 * 109.47367 * 300.00147 * 9 7 6 34 34 H 1.09002 * 109.46663 * 60.00035 * 9 7 6 35 35 H 1.09000 * 109.46680 * 180.02562 * 9 7 6 36 36 H 0.96997 * 120.00267 * 24.99902 * 10 7 6 37 37 H 0.96997 * 120.00086 * 359.97438 * 13 11 10 38 38 H 1.08998 * 109.47113 * 299.99977 * 14 13 11 39 39 H 1.08996 * 109.47508 * 59.99830 * 14 13 11 40 40 H 0.96999 * 120.00500 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 3.1034 -1.4582 1.3025 6 6 3.2467 -1.9243 2.5424 7 6 4.3622 -2.8190 3.0182 8 1 5.1713 -2.8107 2.2879 9 6 3.8367 -4.2467 3.1809 10 7 4.8623 -2.3329 4.3066 11 6 6.1231 -2.6153 4.6899 12 8 6.8454 -3.2739 3.9668 13 7 6.5830 -2.1686 5.8754 14 6 7.9534 -2.4760 6.2924 15 6 8.2156 -1.8660 7.6453 16 1 7.4394 -1.3051 8.1443 17 6 9.4469 -2.0232 8.2454 18 7 10.3924 -2.7059 7.6374 19 14 9.7722 -1.2665 9.9220 20 1 9.4079 -2.2392 10.9833 21 1 11.2121 -0.9225 10.0389 22 1 8.9552 -0.0362 10.0767 23 7 2.2596 -1.4845 3.2779 24 7 1.4549 -0.6909 2.4443 25 1 0.6432 -0.2224 2.6945 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.6767 1.9563 0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 3.0277 -4.2551 3.9113 34 1 3.4646 -4.6083 2.2223 35 1 4.6435 -4.8937 3.5255 36 1 4.2860 -1.8078 4.8836 37 1 6.0067 -1.6435 6.4525 38 1 8.0816 -3.5569 6.3506 39 1 8.6549 -2.0655 5.5662 40 1 11.2586 -2.8168 8.0597 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787348984.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:20 Heat of formation + Delta-G solvation = 36.553823 kcal Electronic energy + Delta-G solvation = -21409.848517 eV Core-core repulsion = 18067.944719 eV Total energy + Delta-G solvation = -3341.903798 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.48119 -39.22581 -36.48149 -35.21377 -33.95769 -32.69533 -32.26373 -30.78808 -29.62321 -27.75839 -26.90995 -24.58028 -23.83627 -22.45197 -20.71422 -20.30672 -19.88151 -18.35709 -17.73067 -16.26557 -16.04415 -15.85782 -15.37065 -14.84100 -14.62167 -14.50451 -14.17180 -13.63639 -13.53245 -12.98078 -12.92818 -12.77986 -12.63297 -12.09838 -11.93473 -11.87582 -11.81337 -11.74421 -11.47292 -11.27115 -10.91587 -10.84149 -10.31018 -10.25711 -10.23315 -9.76087 -9.34336 -9.31393 -8.77228 -8.65165 -7.70546 -6.10362 -4.16517 1.33188 2.33740 2.57804 3.27913 3.28414 3.34631 3.37698 3.68620 4.00265 4.19726 4.28483 4.37338 4.46538 4.76136 4.82878 5.00420 5.15565 5.17904 5.25581 5.26049 5.37375 5.39901 5.45963 5.59077 5.71112 5.76279 5.98254 6.03734 6.14419 6.37140 6.75112 6.87615 7.18491 7.57884 7.61353 7.63848 7.87350 7.96962 8.10295 8.82200 9.00113 9.38699 9.53587 10.99918 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.029571 B = 0.002902 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.630430 B = 9646.764012 C =10035.696054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.018 4.018 3 C -0.146 4.146 4 C 0.290 3.710 5 N -0.528 5.528 6 C 0.231 3.769 7 C 0.259 3.741 8 H 0.114 0.886 9 C -0.156 4.156 10 N -0.750 5.750 11 C 0.697 3.303 12 O -0.598 6.598 13 N -0.728 5.728 14 C 0.267 3.733 15 C -0.541 4.541 16 H 0.062 0.938 17 C 0.063 3.937 18 N -0.886 5.886 19 Si 0.904 3.096 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 N -0.305 5.305 24 N -0.480 5.480 25 H 0.438 0.562 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.056 0.944 29 H 0.111 0.889 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.395 0.605 37 H 0.386 0.614 38 H 0.026 0.974 39 H 0.025 0.975 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.986 6.703 -14.393 27.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.039 4.039 3 C -0.205 4.205 4 C 0.011 3.989 5 N -0.256 5.256 6 C -0.053 4.053 7 C 0.150 3.850 8 H 0.132 0.868 9 C -0.215 4.215 10 N -0.408 5.408 11 C 0.397 3.603 12 O -0.476 6.476 13 N -0.380 5.380 14 C 0.146 3.854 15 C -0.579 4.579 16 H 0.080 0.920 17 C -0.141 4.141 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 N -0.134 5.134 24 N -0.198 5.198 25 H 0.284 0.716 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.129 0.871 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.229 0.771 37 H 0.218 0.782 38 H 0.044 0.956 39 H 0.043 0.957 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.853 5.735 -14.517 26.855 hybrid contribution -0.978 1.324 1.561 2.268 sum -22.830 7.059 -12.956 27.183 Atomic orbital electron populations 1.21935 0.93301 1.02872 1.03068 1.19836 0.95906 0.95977 0.92184 1.21861 1.02543 0.93394 1.02662 1.24342 0.90234 0.95317 0.89003 1.70359 1.18317 1.15658 1.21241 1.24383 0.95573 0.97456 0.87847 1.18756 0.90598 0.89319 0.86336 0.86798 1.22175 1.02141 0.95125 1.02086 1.45149 1.14000 1.60766 1.20864 1.16060 0.80815 0.80589 0.82866 1.90875 1.56975 1.45016 1.54783 1.45708 1.17797 1.56700 1.17800 1.18988 0.75273 0.96697 0.94450 1.21234 0.98804 1.35029 1.02845 0.91986 1.24941 0.95760 0.95169 0.98182 1.69981 1.04350 1.39705 1.38269 0.86418 0.77518 0.79412 0.83546 1.20502 1.21040 1.19829 1.77970 1.06127 1.12602 1.16719 1.47949 1.24032 1.40075 1.07730 0.71613 0.91782 0.90472 0.92538 0.87096 0.92472 0.91351 0.90845 0.92238 0.91726 0.90289 0.77107 0.78158 0.95640 0.95676 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 8.95 37.16 0.33 -0.20 16 2 C -0.02 -0.11 3.39 -91.77 -0.31 -0.42 16 3 C -0.15 -0.78 9.18 37.16 0.34 -0.44 16 4 C 0.29 2.88 6.95 -155.69 -1.08 1.80 16 5 N -0.53 -7.18 11.19 -8.16 -0.09 -7.27 16 6 C 0.23 3.31 6.95 -156.85 -1.09 2.22 16 7 C 0.26 4.04 3.12 -69.08 -0.22 3.82 16 8 H 0.11 1.98 7.58 -51.93 -0.39 1.58 16 9 C -0.16 -2.16 9.47 37.16 0.35 -1.81 16 10 N -0.75 -12.70 5.07 -59.81 -0.30 -13.00 16 11 C 0.70 15.11 8.53 -86.91 -0.74 14.37 16 12 O -0.60 -15.21 16.01 5.29 0.08 -15.13 16 13 N -0.73 -16.31 5.55 -66.41 -0.37 -16.68 16 14 C 0.27 7.33 5.43 -5.19 -0.03 7.31 16 15 C -0.54 -15.06 9.28 -34.44 -0.32 -15.37 16 16 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 17 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 18 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 19 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 23 N -0.31 -3.98 12.46 32.42 0.40 -3.57 16 24 N -0.48 -4.53 7.20 32.62 0.24 -4.30 16 25 H 0.44 2.57 8.21 -182.34 -1.50 1.08 16 26 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 27 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.06 0.14 7.46 -51.93 -0.39 -0.24 16 29 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.40 5.96 8.34 -40.82 -0.34 5.62 16 37 H 0.39 7.53 8.34 -40.82 -0.34 7.19 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 343.69 15.07 5.18 5.18 Total: -1.00 -35.10 343.69 -9.15 -44.25 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -7.14 Total: 7.15 kcal Atomic # 6 Polarization: 15.82 SS G_CDS: -2.86 Total: 12.96 kcal Atomic # 7 Polarization: -71.26 SS G_CDS: 0.61 Total: -70.64 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: 0.08 Total: -15.13 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.10 -9.15 -44.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787348984.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.800 kcal (2) G-P(sol) polarization free energy of solvation -35.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds