Wall clock time and date at job start Tue Mar 31 2020 05:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99540 * 2 1 3 5 5 N 1.30833 * 125.95772 * 144.71463 * 4 2 1 6 6 C 1.33240 * 109.82343 * 179.86824 * 5 4 2 7 7 C 1.50706 * 125.52456 * 180.12713 * 6 5 4 8 8 H 1.08997 * 109.47100 * 15.29752 * 7 6 5 9 9 C 1.53001 * 109.47160 * 255.29441 * 7 6 5 10 10 N 1.46501 * 109.46734 * 135.29798 * 7 6 5 11 11 C 1.34779 * 119.99498 * 205.00236 * 10 7 6 12 12 O 1.21587 * 120.00270 * 359.97438 * 11 10 7 13 13 N 1.34778 * 119.99680 * 180.02562 * 11 10 7 14 14 C 1.46501 * 119.99823 * 179.97438 * 13 11 10 15 15 C 1.50700 * 109.47124 * 180.02562 * 14 13 11 16 16 H 1.07995 * 120.00127 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00033 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00108 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00197 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47264 * 89.99650 * 19 17 15 21 21 H 1.48501 * 109.47486 * 209.99672 * 19 17 15 22 22 H 1.48499 * 109.47185 * 330.00123 * 19 17 15 23 23 N 1.30710 * 108.94830 * 0.40598 * 6 5 4 24 24 N 1.34426 * 125.96210 * 325.02819 * 4 2 1 25 25 H 0.97003 * 126.82048 * 0.02562 * 24 4 2 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 31 31 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 33 33 H 1.08997 * 109.47367 * 300.00147 * 9 7 6 34 34 H 1.09002 * 109.46663 * 60.00035 * 9 7 6 35 35 H 1.09000 * 109.46680 * 180.02562 * 9 7 6 36 36 H 0.96997 * 120.00267 * 24.99902 * 10 7 6 37 37 H 0.96997 * 120.00086 * 359.97438 * 13 11 10 38 38 H 1.08998 * 109.47113 * 299.99977 * 14 13 11 39 39 H 1.08996 * 109.47508 * 59.99830 * 14 13 11 40 40 H 0.96999 * 120.00500 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 3.1034 -1.4582 1.3025 6 6 3.2467 -1.9243 2.5424 7 6 4.3622 -2.8190 3.0182 8 1 5.1713 -2.8107 2.2879 9 6 3.8367 -4.2467 3.1809 10 7 4.8623 -2.3329 4.3066 11 6 6.1231 -2.6153 4.6899 12 8 6.8454 -3.2739 3.9668 13 7 6.5830 -2.1686 5.8754 14 6 7.9534 -2.4760 6.2924 15 6 8.2156 -1.8660 7.6453 16 1 7.4394 -1.3051 8.1443 17 6 9.4469 -2.0232 8.2454 18 7 10.3924 -2.7059 7.6374 19 14 9.7722 -1.2665 9.9220 20 1 9.4079 -2.2392 10.9833 21 1 11.2121 -0.9225 10.0389 22 1 8.9552 -0.0362 10.0767 23 7 2.2596 -1.4845 3.2779 24 7 1.4549 -0.6909 2.4443 25 1 0.6432 -0.2224 2.6945 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.6767 1.9563 0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 3.0277 -4.2551 3.9113 34 1 3.4646 -4.6083 2.2223 35 1 4.6435 -4.8937 3.5255 36 1 4.2860 -1.8078 4.8836 37 1 6.0067 -1.6435 6.4525 38 1 8.0816 -3.5569 6.3506 39 1 8.6549 -2.0655 5.5662 40 1 11.2586 -2.8168 8.0597 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787348984.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:19 Heat of formation + Delta-G solvation = 9.800652 kcal Electronic energy + Delta-G solvation = -21411.008622 eV Core-core repulsion = 18067.944719 eV Total energy + Delta-G solvation = -3343.063903 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.40349 -40.96571 -37.46337 -36.35363 -35.87411 -34.41436 -33.60863 -32.02886 -30.74415 -28.95681 -28.09310 -25.73781 -24.89092 -24.20244 -21.93528 -21.53328 -21.09442 -19.94504 -18.78543 -18.05581 -17.51284 -16.88899 -16.64273 -16.38019 -16.09086 -15.73440 -15.20623 -15.08528 -14.69280 -14.45441 -14.03706 -14.00037 -13.70576 -13.45184 -13.12951 -13.07562 -12.87850 -12.71082 -12.56383 -12.46676 -12.21972 -12.21592 -11.92429 -11.46481 -11.32411 -11.23571 -11.18923 -10.79351 -10.65922 -10.36824 -9.66103 -8.27001 -6.43290 0.43021 1.42813 1.46826 1.48839 1.55883 1.58235 1.92356 2.21127 2.39954 2.75769 3.07722 3.35308 3.50856 3.65631 3.98283 4.07376 4.13070 4.30032 4.39106 4.61416 4.71844 4.80041 4.84408 4.90817 5.00910 5.07595 5.10001 5.11787 5.21230 5.29243 5.29559 5.32131 5.41682 5.49288 5.66272 5.85867 6.09054 6.19575 6.67800 6.94890 7.22942 7.27488 7.67643 8.85371 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.029571 B = 0.002902 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.630430 B = 9646.764012 C =10035.696054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.016 4.016 3 C -0.143 4.143 4 C 0.299 3.701 5 N -0.563 5.563 6 C 0.218 3.782 7 C 0.258 3.742 8 H 0.091 0.909 9 C -0.146 4.146 10 N -0.727 5.727 11 C 0.698 3.302 12 O -0.638 6.638 13 N -0.722 5.722 14 C 0.286 3.714 15 C -0.555 4.555 16 H 0.082 0.918 17 C 0.004 3.996 18 N -0.930 5.930 19 Si 0.986 3.014 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.257 1.257 23 N -0.316 5.316 24 N -0.464 5.464 25 H 0.456 0.544 26 H 0.059 0.941 27 H 0.096 0.904 28 H 0.068 0.932 29 H 0.111 0.889 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.408 0.592 37 H 0.403 0.597 38 H -0.011 1.011 39 H -0.013 1.013 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.692 8.596 -13.796 30.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.037 4.037 3 C -0.202 4.202 4 C 0.021 3.979 5 N -0.292 5.292 6 C -0.065 4.065 7 C 0.150 3.850 8 H 0.109 0.891 9 C -0.205 4.205 10 N -0.385 5.385 11 C 0.398 3.602 12 O -0.520 6.520 13 N -0.375 5.375 14 C 0.162 3.838 15 C -0.593 4.593 16 H 0.100 0.900 17 C -0.196 4.196 18 N -0.568 5.568 19 Si 0.809 3.191 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.181 1.181 23 N -0.146 5.146 24 N -0.184 5.184 25 H 0.305 0.695 26 H 0.078 0.922 27 H 0.115 0.885 28 H 0.087 0.913 29 H 0.129 0.871 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.115 0.885 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.244 0.756 37 H 0.238 0.762 38 H 0.007 0.993 39 H 0.005 0.995 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -24.670 7.669 -13.926 29.349 hybrid contribution -0.228 0.763 1.246 1.479 sum -24.898 8.433 -12.680 29.186 Atomic orbital electron populations 1.21943 0.90931 1.03142 1.04718 1.20067 0.97704 0.95757 0.90165 1.21862 1.01089 0.93103 1.04129 1.25050 0.88937 0.93910 0.90023 1.70317 1.20368 1.17248 1.21268 1.23952 0.95719 0.98290 0.88578 1.18728 0.90716 0.90846 0.84760 0.89107 1.22069 1.01579 0.93526 1.03332 1.44894 1.12235 1.59890 1.21489 1.16136 0.81828 0.80047 0.82196 1.90846 1.58557 1.46767 1.55873 1.45315 1.16425 1.57239 1.18551 1.18443 0.77024 0.94191 0.94093 1.21589 0.99680 1.35242 1.02793 0.89993 1.26058 0.95321 0.95359 1.02834 1.70142 1.05033 1.41116 1.40544 0.85137 0.77442 0.78926 0.77562 1.19546 1.20858 1.18094 1.77858 1.06165 1.13147 1.17480 1.47851 1.24117 1.39220 1.07193 0.69506 0.92192 0.88539 0.91258 0.87064 0.91973 0.93624 0.88451 0.91151 0.89933 0.92297 0.75599 0.76157 0.99284 0.99495 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 8.95 71.98 0.64 0.08 16 2 C -0.02 -0.15 3.39 -11.54 -0.04 -0.19 16 3 C -0.14 -1.21 9.18 71.98 0.66 -0.55 16 4 C 0.30 5.49 6.95 138.23 0.96 6.45 16 5 N -0.56 -15.06 11.19 -179.72 -2.01 -17.07 16 6 C 0.22 6.16 6.95 138.63 0.96 7.12 16 7 C 0.26 8.17 3.12 44.25 0.14 8.31 16 8 H 0.09 3.32 7.58 -2.39 -0.02 3.30 16 9 C -0.15 -4.06 9.47 71.98 0.68 -3.38 16 10 N -0.73 -24.82 5.07 -461.40 -2.34 -27.16 16 11 C 0.70 31.15 8.53 179.05 1.53 32.68 16 12 O -0.64 -34.10 16.01 -3.99 -0.06 -34.17 16 13 N -0.72 -32.98 5.55 -482.30 -2.68 -35.66 16 14 C 0.29 16.33 5.43 85.63 0.46 16.79 16 15 C -0.56 -31.06 9.28 25.60 0.24 -30.83 16 16 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 17 C 0.00 0.22 5.46 84.65 0.46 0.68 16 18 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16 19 Si 0.99 43.14 29.54 68.60 2.03 45.17 16 20 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 21 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 23 N -0.32 -7.79 12.46 -51.33 -0.64 -8.43 16 24 N -0.46 -7.80 7.20 -50.70 -0.37 -8.16 16 25 H 0.46 4.06 8.21 -213.10 -1.75 2.31 16 26 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 27 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 28 H 0.07 0.10 7.46 -2.38 -0.02 0.08 16 29 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.41 11.98 8.34 -92.71 -0.77 11.21 16 37 H 0.40 15.51 8.34 -92.71 -0.77 14.74 16 38 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 39 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 40 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -78.54 343.69 -1.30 -79.84 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: -2.22 Total: 25.23 kcal Atomic # 6 Polarization: 30.47 SS G_CDS: 6.70 Total: 37.17 kcal Atomic # 7 Polarization: -145.49 SS G_CDS: -7.75 Total: -153.24 kcal Atomic # 8 Polarization: -34.10 SS G_CDS: -0.06 Total: -34.17 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -78.54 -1.30 -79.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787348984.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.640 kcal (2) G-P(sol) polarization free energy of solvation -78.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds