Wall clock time and date at job start Tue Mar 31 2020 05:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47203 * 2 1 4 4 H 1.09000 * 109.47075 * 174.13772 * 3 2 1 5 5 N 1.46897 * 109.47133 * 294.14260 * 3 2 1 6 6 C 1.46897 * 110.99844 * 274.78488 * 5 3 2 7 7 C 1.52999 * 109.47489 * 176.19687 * 6 5 3 8 8 C 1.53004 * 109.47532 * 180.02562 * 7 6 5 9 9 C 1.50692 * 109.47349 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99887 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00231 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99829 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00157 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47141 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47252 * 119.99879 * 13 11 9 16 16 H 1.48500 * 109.46782 * 239.99960 * 13 11 9 17 17 C 1.50710 * 109.47236 * 54.14161 * 3 2 1 18 18 C 1.38176 * 119.99932 * 265.00050 * 17 3 2 19 19 C 1.38208 * 120.08116 * 180.02562 * 18 17 3 20 20 C 1.38523 * 120.08109 * 359.97438 * 19 18 17 21 21 F 1.35095 * 119.99298 * 179.97438 * 20 19 18 22 22 C 1.38342 * 120.00592 * 0.02562 * 20 19 18 23 23 C 1.38715 * 119.92158 * 359.70186 * 22 20 19 24 24 O 1.35894 * 120.04414 * 180.29491 * 23 22 20 25 25 H 1.08998 * 109.47080 * 177.47046 * 1 2 3 26 26 H 1.08999 * 109.46966 * 297.47407 * 1 2 3 27 27 H 1.09003 * 109.46742 * 57.46866 * 1 2 3 28 28 H 1.08995 * 109.46551 * 119.99832 * 2 1 3 29 29 H 1.08989 * 109.46819 * 239.99811 * 2 1 3 30 30 H 1.00901 * 111.00423 * 38.73703 * 5 3 2 31 31 H 1.09007 * 109.47171 * 296.19620 * 6 5 3 32 32 H 1.09005 * 109.47546 * 56.19618 * 6 5 3 33 33 H 1.09007 * 109.46860 * 300.00124 * 7 6 5 34 34 H 1.08998 * 109.47327 * 59.99848 * 7 6 5 35 35 H 1.09007 * 109.46874 * 299.99778 * 8 7 6 36 36 H 1.08998 * 109.47214 * 59.99441 * 8 7 6 37 37 H 0.97002 * 120.00162 * 180.02562 * 12 11 9 38 38 H 1.08004 * 119.96506 * 359.97438 * 18 17 3 39 39 H 1.07995 * 119.95858 * 179.97438 * 19 18 17 40 40 H 1.08000 * 120.04108 * 179.97438 * 22 20 19 41 41 H 0.96700 * 114.00096 * 270.29438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1250 1.4442 0.1050 5 7 1.6692 2.0929 -1.2638 6 6 2.6615 1.8138 -2.3105 7 6 2.1946 2.4266 -3.6324 8 6 3.2277 2.1353 -4.7227 9 6 2.7676 2.7383 -6.0248 10 1 1.8315 3.2752 -6.0703 11 6 3.5414 2.6046 -7.1580 12 7 4.6809 1.9504 -7.1027 13 14 2.9713 3.3527 -8.7720 14 1 1.6658 4.0308 -8.5694 15 1 3.9753 4.3408 -9.2416 16 1 2.8191 2.2804 -9.7881 17 6 1.4228 2.1936 1.1516 18 6 0.2809 2.9459 0.9530 19 6 -0.2862 3.6358 2.0078 20 6 0.2884 3.5743 3.2667 21 9 -0.2672 4.2498 4.2963 22 6 1.4316 2.8222 3.4694 23 6 1.9978 2.1251 2.4122 24 8 3.1174 1.3807 2.6099 25 1 -0.3633 -1.0266 -0.0454 26 1 -0.3633 0.4741 0.9118 27 1 -0.3633 0.5527 -0.8665 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 0.7455 1.8127 -1.5574 31 1 3.6203 2.2482 -2.0273 32 1 2.7717 0.7358 -2.4286 33 1 1.2357 1.9922 -3.9155 34 1 2.0844 3.5045 -3.5144 35 1 4.1868 2.5694 -4.4397 36 1 3.3375 1.0573 -4.8406 37 1 5.2255 1.8566 -7.8999 38 1 -0.1685 2.9955 -0.0278 39 1 -1.1785 4.2235 1.8502 40 1 1.8803 2.7743 4.4507 41 1 3.9421 1.8679 2.4772 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796753443.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:11 Heat of formation + Delta-G solvation = -84.370443 kcal Electronic energy + Delta-G solvation = -21580.642804 eV Core-core repulsion = 18181.282624 eV Total energy + Delta-G solvation = -3399.360181 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.08956 -40.34618 -37.53350 -36.58297 -34.30872 -32.51153 -30.75713 -30.34431 -29.87791 -26.61020 -25.31363 -23.28137 -22.76163 -22.24511 -20.34603 -19.97041 -18.86482 -16.99202 -16.76944 -16.40403 -16.04226 -15.73886 -15.50349 -14.81907 -14.71361 -14.45129 -14.31607 -14.02453 -13.84200 -13.41768 -13.15852 -12.61837 -12.25695 -12.03036 -11.89313 -11.68500 -11.65497 -11.31597 -11.09304 -11.00302 -10.85450 -10.75765 -10.59519 -10.44212 -9.73355 -9.36831 -9.11610 -9.05795 -8.65168 -8.35597 -8.23570 -6.00502 -4.02551 0.88095 0.97840 3.24464 3.30725 3.38256 3.42539 3.75906 4.18446 4.27591 4.46661 4.59633 4.71145 4.78353 4.93551 5.00626 5.15838 5.22222 5.35564 5.50540 5.58003 5.62343 5.76327 5.78124 5.82360 5.86871 5.95370 5.99913 6.12000 6.16591 6.25654 6.29656 6.55876 6.69127 6.74993 7.10779 7.27757 7.36250 7.54840 7.67591 7.81971 7.99849 8.43014 9.04923 9.61650 11.10958 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026812 B = 0.002986 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.050099 B = 9375.197280 C = 9713.601976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.148 4.148 3 C 0.130 3.870 4 H 0.088 0.912 5 N -0.686 5.686 6 C 0.059 3.941 7 C -0.108 4.108 8 C 0.022 3.978 9 C -0.518 4.518 10 H 0.055 0.945 11 C 0.055 3.945 12 N -0.896 5.896 13 Si 0.891 3.109 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.093 4.093 18 C -0.051 4.051 19 C -0.164 4.164 20 C 0.104 3.896 21 F -0.141 7.141 22 C -0.184 4.184 23 C 0.134 3.866 24 O -0.492 6.492 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.339 0.661 31 H 0.067 0.933 32 H 0.027 0.973 33 H 0.044 0.956 34 H 0.056 0.944 35 H 0.016 0.984 36 H 0.014 0.986 37 H 0.259 0.741 38 H 0.143 0.857 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.297 -0.707 21.157 22.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.187 4.187 3 C 0.019 3.981 4 H 0.106 0.894 5 N -0.317 5.317 6 C -0.069 4.069 7 C -0.146 4.146 8 C -0.015 4.015 9 C -0.557 4.557 10 H 0.074 0.926 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.719 3.281 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.211 1.211 17 C -0.094 4.094 18 C -0.069 4.069 19 C -0.183 4.183 20 C 0.085 3.915 21 F -0.120 7.120 22 C -0.204 4.204 23 C 0.089 3.911 24 O -0.303 6.303 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.159 0.841 31 H 0.086 0.914 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.034 0.966 36 H 0.032 0.968 37 H 0.069 0.931 38 H 0.160 0.840 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -7.282 -0.577 21.365 22.579 hybrid contribution -0.091 -0.065 -0.992 0.998 sum -7.373 -0.642 20.373 21.676 Atomic orbital electron populations 1.21832 0.95696 1.01733 1.01899 1.22118 0.96679 0.97018 1.02876 1.20287 0.99354 0.90376 0.88076 0.89413 1.60749 1.06400 1.61352 1.03228 1.22162 0.95002 0.98180 0.91545 1.21640 0.99989 1.00014 0.92962 1.19059 0.93671 0.96810 0.91990 1.21290 1.05948 1.34366 0.94070 0.92630 1.25031 0.94990 0.95418 0.99103 1.69973 1.12617 1.41995 1.28999 0.86546 0.78770 0.78991 0.83764 1.19718 1.21014 1.21063 1.20240 0.96835 0.98734 0.93591 1.20813 0.93826 0.93520 0.98759 1.21211 1.02280 1.03272 0.91502 1.17451 0.93948 0.95350 0.84751 1.91495 1.84675 1.78133 1.57677 1.21265 0.97965 1.00228 1.00926 1.17903 0.89657 0.92590 0.90998 1.84817 1.14868 1.38441 1.92135 0.92684 0.92421 0.92535 0.91083 0.91286 0.84132 0.91427 0.95438 0.93685 0.92524 0.96580 0.96809 0.93087 0.83953 0.84612 0.84460 0.75021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.00 37.16 0.33 -1.20 16 2 C -0.15 -1.61 5.80 -26.73 -0.15 -1.77 16 3 C 0.13 1.49 2.28 -68.86 -0.16 1.33 16 4 H 0.09 1.03 7.40 -51.93 -0.38 0.65 16 5 N -0.69 -9.06 5.27 -107.95 -0.57 -9.63 16 6 C 0.06 0.96 5.48 -3.83 -0.02 0.94 16 7 C -0.11 -2.15 5.37 -26.73 -0.14 -2.30 16 8 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 9 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 10 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 11 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 12 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 13 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 14 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 C -0.09 -1.01 4.13 -104.46 -0.43 -1.44 16 18 C -0.05 -0.53 7.96 -39.62 -0.32 -0.85 16 19 C -0.16 -1.63 10.02 -39.49 -0.40 -2.02 16 20 C 0.10 1.11 7.30 -39.44 -0.29 0.82 16 21 F -0.14 -1.57 17.27 2.25 0.04 -1.53 16 22 C -0.18 -1.86 9.97 -39.37 -0.39 -2.26 16 23 C 0.13 1.38 6.68 -39.23 -0.26 1.12 16 24 O -0.49 -4.49 12.64 -19.41 -0.25 -4.74 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.57 6.54 -51.93 -0.34 0.23 16 27 H 0.06 0.55 6.38 -51.93 -0.33 0.22 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.81 7.31 -51.94 -0.38 0.43 16 30 H 0.34 4.22 5.96 -39.29 -0.23 3.99 16 31 H 0.07 1.13 8.13 -51.93 -0.42 0.70 16 32 H 0.03 0.45 7.30 -51.93 -0.38 0.07 16 33 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.14 1.41 6.89 -52.48 -0.36 1.05 16 39 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.39 2.00 9.06 45.56 0.41 2.42 16 LS Contribution 338.86 15.07 5.11 5.11 Total: -1.00 -30.93 338.86 -8.07 -39.01 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -5.34 Total: 2.00 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: -2.78 Total: -20.64 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.17 Total: -35.80 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: -0.25 Total: -4.74 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.93 -8.07 -39.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796753443.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.362 kcal (2) G-P(sol) polarization free energy of solvation -30.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds