Wall clock time and date at job start Tue Mar 31 2020 05:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47030 * 2 1 4 4 H 1.08998 * 109.47379 * 54.42206 * 3 2 1 5 5 N 1.46900 * 109.47106 * 294.42715 * 3 2 1 6 6 C 1.46895 * 111.00148 * 153.48531 * 5 3 2 7 7 C 1.53000 * 109.47088 * 174.78525 * 6 5 3 8 8 C 1.53000 * 109.47100 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.47142 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99926 * 0.02562 * 9 8 7 11 11 C 1.37883 * 120.00111 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99641 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99816 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47208 * 90.00470 * 13 11 9 15 15 H 1.48507 * 109.46850 * 210.00080 * 13 11 9 16 16 H 1.48497 * 109.47346 * 329.99777 * 13 11 9 17 17 C 1.50697 * 109.47259 * 174.42369 * 3 2 1 18 18 C 1.38182 * 119.99844 * 99.72385 * 17 3 2 19 19 C 1.38209 * 120.07153 * 179.70015 * 18 17 3 20 20 C 1.38517 * 120.08904 * 0.59877 * 19 18 17 21 21 F 1.35101 * 119.99616 * 179.70112 * 20 19 18 22 22 C 1.38341 * 120.00349 * 359.67759 * 20 19 18 23 23 C 1.38701 * 119.91911 * 0.02562 * 22 20 19 24 24 O 1.35904 * 120.04274 * 179.97438 * 23 22 20 25 25 H 1.08998 * 109.46838 * 186.15568 * 1 2 3 26 26 H 1.08996 * 109.47484 * 306.16275 * 1 2 3 27 27 H 1.09007 * 109.46747 * 66.16605 * 1 2 3 28 28 H 1.08996 * 109.47655 * 240.00068 * 2 1 3 29 29 H 1.08999 * 109.46641 * 119.99326 * 2 1 3 30 30 H 1.00908 * 111.00107 * 29.52521 * 5 3 2 31 31 H 1.09002 * 109.47088 * 294.77764 * 6 5 3 32 32 H 1.08992 * 109.47592 * 54.78157 * 6 5 3 33 33 H 1.09003 * 109.47052 * 299.99535 * 7 6 5 34 34 H 1.08996 * 109.47684 * 59.99507 * 7 6 5 35 35 H 1.09002 * 109.47061 * 299.99228 * 8 7 6 36 36 H 1.09002 * 109.47700 * 59.99793 * 8 7 6 37 37 H 0.97001 * 119.99926 * 179.97438 * 12 11 9 38 38 H 1.07995 * 119.96387 * 0.02562 * 18 17 3 39 39 H 1.08008 * 119.95195 * 180.28103 * 19 18 17 40 40 H 1.07999 * 120.03511 * 180.02562 * 22 20 19 41 41 H 0.96705 * 113.99813 * 270.02555 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5974 1.9844 0.8358 5 7 1.6632 2.0951 -1.2610 6 6 1.5478 3.5492 -1.0873 7 6 1.2831 4.2054 -2.4439 8 6 1.1635 5.7200 -2.2631 9 6 0.9034 6.3664 -3.5993 10 1 0.8302 5.7578 -4.4885 11 6 0.7577 7.7347 -3.6866 12 7 0.8462 8.4757 -2.6037 13 14 0.4346 8.5359 -5.3428 14 1 -1.0297 8.6145 -5.5775 15 1 1.0115 9.9042 -5.3517 16 1 1.0651 7.7259 -6.4159 17 6 3.5406 1.4448 0.1381 18 6 4.3370 1.6097 -0.9791 19 6 5.7133 1.6183 -0.8534 20 6 6.2980 1.4492 0.3909 21 9 7.6437 1.4519 0.5107 22 6 5.5042 1.2782 1.5108 23 6 4.1228 1.2757 1.3858 24 8 3.3405 1.1074 2.4843 25 1 -0.3633 -1.0217 0.1102 26 1 -0.3634 0.6064 0.8296 27 1 -0.3633 0.4153 -0.9401 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 0.8078 1.7057 -1.6282 31 1 0.7228 3.7698 -0.4100 32 1 2.4754 3.9400 -0.6695 33 1 2.1080 3.9848 -3.1213 34 1 0.3554 3.8146 -2.8618 35 1 0.3387 5.9410 -1.5856 36 1 2.0914 6.1105 -1.8454 37 1 0.7441 9.4384 -2.6651 38 1 3.8833 1.7373 -1.9508 39 1 6.3338 1.7518 -1.7273 40 1 5.9595 1.1467 2.4813 41 1 3.1273 0.1841 2.6776 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796753444.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:13 Heat of formation + Delta-G solvation = -85.642226 kcal Electronic energy + Delta-G solvation = -21700.470200 eV Core-core repulsion = 18301.054871 eV Total energy + Delta-G solvation = -3399.415329 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.97863 -40.19110 -37.34304 -36.52065 -34.32276 -32.55166 -31.05847 -30.23502 -29.85852 -26.52661 -25.08835 -23.05687 -22.48454 -22.27246 -20.61030 -19.90462 -18.77409 -17.03739 -16.70671 -16.35814 -15.96350 -15.68023 -15.27157 -15.07468 -14.77431 -14.43060 -14.06374 -13.77824 -13.74052 -13.25985 -13.02550 -12.74814 -12.28871 -12.05463 -11.94120 -11.70819 -11.49688 -11.33950 -11.11986 -11.02536 -10.80503 -10.73932 -10.54046 -10.43490 -9.68654 -9.32228 -9.04003 -8.99770 -8.53521 -8.32355 -8.26179 -5.97188 -3.99381 0.97217 1.10877 3.33571 3.36518 3.39797 3.43353 3.81362 4.21368 4.35284 4.48927 4.63891 4.77654 4.81722 4.94993 4.96884 5.20668 5.30698 5.38621 5.50579 5.59875 5.63106 5.76016 5.81203 5.86348 5.91995 5.96034 6.01000 6.09782 6.26489 6.33694 6.39548 6.69892 6.72480 6.79579 7.15566 7.30451 7.40736 7.59812 7.71182 7.86182 8.03298 8.46167 9.07963 9.64545 11.14271 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016242 B = 0.003740 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.499219 B = 7484.636585 C = 8546.837093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.118 4.118 3 C 0.128 3.872 4 H 0.062 0.938 5 N -0.686 5.686 6 C 0.059 3.941 7 C -0.104 4.104 8 C 0.021 3.979 9 C -0.518 4.518 10 H 0.055 0.945 11 C 0.056 3.944 12 N -0.896 5.896 13 Si 0.891 3.109 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.274 1.274 17 C -0.106 4.106 18 C -0.043 4.043 19 C -0.165 4.165 20 C 0.106 3.894 21 F -0.141 7.141 22 C -0.188 4.188 23 C 0.132 3.868 24 O -0.490 6.490 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.343 0.657 31 H 0.026 0.974 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.045 0.955 35 H 0.013 0.987 36 H 0.015 0.985 37 H 0.260 0.740 38 H 0.155 0.845 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.265 -20.482 8.331 22.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.156 4.156 3 C 0.017 3.983 4 H 0.080 0.920 5 N -0.319 5.319 6 C -0.070 4.070 7 C -0.142 4.142 8 C -0.016 4.016 9 C -0.557 4.557 10 H 0.073 0.927 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.719 3.281 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.199 1.199 17 C -0.107 4.107 18 C -0.061 4.061 19 C -0.184 4.184 20 C 0.087 3.913 21 F -0.120 7.120 22 C -0.207 4.207 23 C 0.087 3.913 24 O -0.301 6.301 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.163 0.837 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.173 0.827 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 5.968 -19.655 8.197 22.117 hybrid contribution -0.695 0.245 -0.222 0.769 sum 5.273 -19.410 7.975 21.637 Atomic orbital electron populations 1.21842 0.95404 1.01918 1.02280 1.21644 0.95989 0.95547 1.02442 1.20276 0.90388 0.94750 0.92854 0.91980 1.60505 1.39861 1.05351 1.26186 1.22177 1.00117 0.85503 0.99159 1.21596 1.00196 0.98469 0.93968 1.19067 0.97047 0.88496 0.97006 1.21251 1.48569 0.91897 0.93965 0.92689 1.25029 0.95506 0.97546 0.96417 1.69968 1.50479 1.05375 1.27744 0.86606 0.78344 0.78709 0.84415 1.20722 1.21253 1.19855 1.20306 0.96598 1.01958 0.91868 1.21042 0.91180 0.93713 1.00181 1.21304 0.96297 1.04491 0.96324 1.17494 0.76808 1.02649 0.94341 1.91494 1.29617 1.94023 1.96849 1.21226 0.93399 1.07373 0.98712 1.17946 0.88057 0.99698 0.85620 1.84836 1.69570 1.31535 1.44112 0.92374 0.92544 0.92212 0.90870 0.91936 0.83732 0.95590 0.91540 0.92624 0.93661 0.96859 0.96624 0.93049 0.82749 0.84560 0.84523 0.75577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.64 37.16 0.36 -0.93 16 2 C -0.12 -1.03 5.48 -26.73 -0.15 -1.18 16 3 C 0.13 1.48 1.91 -68.86 -0.13 1.35 16 4 H 0.06 0.82 7.55 -51.93 -0.39 0.42 16 5 N -0.69 -9.11 4.90 -107.96 -0.53 -9.64 16 6 C 0.06 1.00 5.45 -3.83 -0.02 0.98 16 7 C -0.10 -2.12 5.46 -26.73 -0.15 -2.27 16 8 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 9 C -0.52 -14.82 9.11 -34.44 -0.31 -15.14 16 10 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 13 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 17 C -0.11 -1.29 4.87 -104.46 -0.51 -1.80 16 18 C -0.04 -0.54 9.32 -39.61 -0.37 -0.90 16 19 C -0.17 -1.98 10.02 -39.49 -0.40 -2.37 16 20 C 0.11 1.31 7.30 -39.44 -0.29 1.02 16 21 F -0.14 -1.79 17.27 2.25 0.04 -1.75 16 22 C -0.19 -2.16 9.97 -39.37 -0.39 -2.55 16 23 C 0.13 1.52 6.67 -39.23 -0.26 1.26 16 24 O -0.49 -4.89 12.66 -19.44 -0.25 -5.14 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.51 6.67 -51.92 -0.35 0.17 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.45 7.62 -51.93 -0.40 0.05 16 30 H 0.34 4.18 6.64 -39.29 -0.26 3.92 16 31 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 1.22 7.97 -51.93 -0.41 0.80 16 33 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.15 1.97 7.14 -52.49 -0.37 1.59 16 39 H 0.14 1.42 8.06 -52.48 -0.42 0.99 16 40 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 41 H 0.39 1.96 8.63 45.56 0.39 2.35 16 LS Contribution 344.11 15.07 5.19 5.19 Total: -1.00 -31.60 344.11 -8.25 -39.85 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.56 Total: 1.83 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: -2.85 Total: -20.58 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.21 Total: -36.22 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.25 Total: -5.14 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.60 -8.25 -39.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796753444.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.792 kcal (2) G-P(sol) polarization free energy of solvation -31.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds