Wall clock time and date at job start Tue Mar 31 2020 05:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47527 * 2 1 4 4 C 1.53004 * 109.46989 * 239.99561 * 2 1 3 5 5 C 1.50697 * 109.46812 * 60.00856 * 4 2 1 6 6 H 1.08003 * 120.00063 * 359.97438 * 5 4 2 7 7 C 1.37882 * 120.00212 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99419 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00136 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46862 * 90.00303 * 9 7 5 11 11 H 1.48500 * 109.46905 * 209.99874 * 9 7 5 12 12 H 1.48496 * 109.47023 * 329.99947 * 9 7 5 13 13 C 1.53008 * 109.46924 * 120.00294 * 2 1 3 14 14 N 1.46902 * 109.46622 * 299.99642 * 13 2 1 15 15 C 1.46906 * 110.99573 * 179.97438 * 14 13 2 16 16 C 1.50699 * 109.46990 * 180.02562 * 15 14 13 17 17 C 1.38170 * 120.01346 * 259.72435 * 16 15 14 18 18 C 1.38437 * 120.02645 * 179.79260 * 17 16 15 19 19 F 1.35104 * 119.96868 * 180.25507 * 18 17 16 20 20 C 1.38473 * 120.06176 * 0.46218 * 18 17 16 21 21 C 1.38123 * 120.02905 * 359.78790 * 20 18 17 22 22 C 1.38685 * 120.01262 * 79.99818 * 16 15 14 23 23 O 1.35938 * 120.03312 * 359.97438 * 22 16 15 24 24 H 1.09000 * 109.46982 * 300.00666 * 1 2 3 25 25 H 1.09001 * 109.46986 * 59.99735 * 1 2 3 26 26 H 1.08995 * 109.47521 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46981 * 179.97438 * 3 2 1 28 28 H 1.08991 * 109.47245 * 299.99592 * 3 2 1 29 29 H 1.08999 * 109.46856 * 59.99981 * 3 2 1 30 30 H 1.09006 * 109.46807 * 180.02562 * 4 2 1 31 31 H 1.08995 * 109.47458 * 300.00613 * 4 2 1 32 32 H 0.96997 * 119.99459 * 180.02562 * 8 7 5 33 33 H 1.08990 * 109.46924 * 179.97438 * 13 2 1 34 34 H 1.09004 * 109.46978 * 59.99658 * 13 2 1 35 35 H 1.00896 * 111.00219 * 303.95583 * 14 13 2 36 36 H 1.09002 * 109.46991 * 299.99841 * 15 14 13 37 37 H 1.09000 * 109.47202 * 60.00133 * 15 14 13 38 38 H 1.07994 * 119.98557 * 0.02562 * 17 16 15 39 39 H 1.07999 * 119.98508 * 179.77331 * 20 18 17 40 40 H 1.08001 * 120.01373 * 179.97438 * 21 20 18 41 41 H 0.96704 * 114.00283 * 90.00087 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 1 0.9166 0.8671 -2.3806 7 6 1.8712 -0.4816 -3.7320 8 7 2.6280 -1.5505 -3.8526 9 14 1.2481 0.3987 -5.2572 10 1 2.2257 1.4410 -5.6612 11 1 1.0839 -0.5806 -6.3615 12 1 -0.0604 1.0353 -4.9614 13 6 2.0400 -0.7214 1.2493 14 7 1.5503 -0.0288 2.4487 15 6 2.0208 -0.6953 3.6704 16 6 1.4992 0.0413 4.8771 17 6 2.3198 0.9192 5.5590 18 6 1.8396 1.5992 6.6651 19 9 2.6415 2.4612 7.3279 20 6 0.5396 1.3936 7.0953 21 6 -0.2813 0.5127 6.4186 22 6 0.1970 -0.1659 5.3071 23 8 -0.6098 -1.0331 4.6401 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4423 0.0005 28 1 1.6769 1.9563 -0.8899 29 1 1.6768 1.9563 0.8900 30 1 3.1300 -0.7218 -1.2490 31 1 1.6766 -1.7490 -1.2493 32 1 2.8629 -1.8814 -4.7336 33 1 3.1299 -0.7218 1.2491 34 1 1.6765 -1.7490 1.2492 35 1 1.8197 0.9435 2.4402 36 1 1.6568 -1.7227 3.6869 37 1 3.1106 -0.6956 3.6874 38 1 3.3351 1.0777 5.2268 39 1 0.1674 1.9221 7.9605 40 1 -1.2951 0.3522 6.7546 41 1 -0.5667 -1.9419 4.9678 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809778419.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:52 Heat of formation + Delta-G solvation = -79.790983 kcal Electronic energy + Delta-G solvation = -21745.481157 eV Core-core repulsion = 18346.319557 eV Total energy + Delta-G solvation = -3399.161600 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.09302 -40.05466 -37.58160 -36.61029 -34.63149 -32.38915 -31.15336 -29.49921 -27.08759 -26.31054 -26.16542 -24.34497 -22.98616 -22.24571 -21.48917 -18.60489 -17.99980 -17.28714 -17.00982 -16.20962 -15.93579 -15.51852 -15.25897 -14.76388 -14.48615 -14.17078 -13.96801 -13.88299 -13.33435 -13.06188 -12.74633 -12.60193 -12.19389 -11.98011 -11.88724 -11.71396 -11.64098 -10.95855 -10.83582 -10.75014 -10.60345 -10.45675 -10.23654 -10.09359 -9.65099 -9.35252 -8.98429 -8.81512 -8.63940 -8.29582 -8.06389 -5.94341 -3.94137 0.81794 0.88017 3.16649 3.34903 3.41452 3.44846 3.95238 4.01991 4.37714 4.50266 4.51495 4.69866 4.81270 5.08215 5.33545 5.39293 5.41667 5.57630 5.68304 5.75587 5.79412 5.83037 5.88121 6.01938 6.19618 6.26742 6.36827 6.49442 6.54142 6.72519 6.82850 6.87841 7.23578 7.24351 7.31257 7.40598 7.52929 7.66275 7.73084 7.88125 8.06289 8.51016 9.11263 9.68563 11.17409 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.032219 B = 0.003159 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.851609 B = 8862.204978 C = 9102.886416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.058 4.058 3 C -0.129 4.129 4 C 0.034 3.966 5 C -0.506 4.506 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.071 3.929 14 N -0.674 5.674 15 C 0.103 3.897 16 C -0.078 4.078 17 C -0.134 4.134 18 C 0.085 3.915 19 F -0.141 7.141 20 C -0.140 4.140 21 C -0.122 4.122 22 C 0.124 3.876 23 O -0.478 6.478 24 H 0.043 0.957 25 H 0.053 0.947 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.064 0.936 29 H 0.033 0.967 30 H 0.012 0.988 31 H 0.015 0.985 32 H 0.258 0.742 33 H 0.023 0.977 34 H 0.067 0.933 35 H 0.338 0.662 36 H 0.082 0.918 37 H 0.036 0.964 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.757 2.339 22.584 22.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.058 4.058 3 C -0.187 4.187 4 C -0.003 4.003 5 C -0.544 4.544 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.057 4.057 14 N -0.306 5.306 15 C -0.026 4.026 16 C -0.079 4.079 17 C -0.153 4.153 18 C 0.066 3.934 19 F -0.120 7.120 20 C -0.159 4.159 21 C -0.140 4.140 22 C 0.078 3.922 23 O -0.288 6.288 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.030 0.970 31 H 0.033 0.967 32 H 0.068 0.932 33 H 0.041 0.959 34 H 0.085 0.915 35 H 0.158 0.842 36 H 0.100 0.900 37 H 0.054 0.946 38 H 0.155 0.845 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -3.404 2.412 22.129 22.519 hybrid contribution 0.975 0.411 -0.545 1.190 sum -2.429 2.823 21.583 21.902 Atomic orbital electron populations 1.21583 0.94855 1.00599 1.00178 1.20627 0.95981 0.94930 0.94281 1.21774 0.99623 0.96834 1.00447 1.19122 0.95829 0.95203 0.90183 1.21248 1.30657 1.11902 0.90615 0.92287 1.25017 0.95440 0.95116 0.99048 1.69969 1.37371 1.23241 1.23253 0.86663 0.79263 0.79404 0.83095 1.20846 1.21387 1.19891 1.22131 0.96206 0.98209 0.89191 1.60562 1.63494 1.06206 1.00291 1.20729 0.96549 0.97974 0.87390 1.20126 0.92921 0.97775 0.97066 1.20999 1.01286 0.97681 0.95363 1.17631 0.89329 0.92756 0.93699 1.91500 1.73067 1.67640 1.79763 1.20988 0.92410 1.00682 1.01845 1.21306 1.00488 0.97598 0.94644 1.18269 0.88554 0.94377 0.91006 1.84969 1.63522 1.21419 1.58858 0.93763 0.92828 0.94184 0.94141 0.91703 0.94831 0.96971 0.96673 0.93197 0.95909 0.91451 0.84247 0.90008 0.94637 0.84524 0.84536 0.84427 0.75741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.29 8.06 37.16 0.30 -1.99 16 2 C -0.06 -1.16 0.60 -154.50 -0.09 -1.26 16 3 C -0.13 -2.45 7.89 37.16 0.29 -2.15 16 4 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.94 7.65 -34.44 -0.26 -14.20 16 6 H 0.06 1.59 5.68 -52.48 -0.30 1.29 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 9 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.07 1.22 4.65 -3.82 -0.02 1.20 16 14 N -0.67 -9.84 5.70 -115.05 -0.66 -10.49 16 15 C 0.10 1.22 5.48 -4.97 -0.03 1.19 16 16 C -0.08 -0.85 5.41 -104.48 -0.56 -1.42 16 17 C -0.13 -1.39 9.64 -39.53 -0.38 -1.77 16 18 C 0.09 0.88 7.30 -39.42 -0.29 0.59 16 19 F -0.14 -1.56 17.27 2.25 0.04 -1.52 16 20 C -0.14 -1.25 10.02 -39.54 -0.40 -1.65 16 21 C -0.12 -1.09 9.98 -39.44 -0.39 -1.49 16 22 C 0.12 1.30 6.68 -39.23 -0.26 1.04 16 23 O -0.48 -5.00 12.73 -19.54 -0.25 -5.25 16 24 H 0.04 0.82 7.60 -51.93 -0.39 0.42 16 25 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 1.33 6.62 -51.93 -0.34 0.98 16 29 H 0.03 0.55 6.57 -51.93 -0.34 0.21 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.34 4.92 6.76 -39.29 -0.27 4.65 16 36 H 0.08 0.93 7.85 -51.93 -0.41 0.52 16 37 H 0.04 0.40 8.00 -51.93 -0.42 -0.02 16 38 H 0.14 1.27 8.03 -52.49 -0.42 0.85 16 39 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 40 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.39 2.19 9.06 45.56 0.41 2.61 16 LS Contribution 338.79 15.07 5.11 5.11 Total: -1.00 -31.22 338.79 -7.69 -38.91 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -5.34 Total: 2.47 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: -2.30 Total: -19.71 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.08 Total: -36.72 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -0.25 Total: -5.25 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.22 -7.69 -38.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809778419.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.883 kcal (2) G-P(sol) polarization free energy of solvation -31.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds