Wall clock time and date at job start Tue Mar 31 2020 05:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47527 * 2 1 4 4 C 1.53004 * 109.46989 * 239.99561 * 2 1 3 5 5 C 1.50697 * 109.46812 * 60.00856 * 4 2 1 6 6 H 1.08003 * 120.00063 * 359.97438 * 5 4 2 7 7 C 1.37882 * 120.00212 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99419 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00136 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46862 * 90.00303 * 9 7 5 11 11 H 1.48500 * 109.46905 * 209.99874 * 9 7 5 12 12 H 1.48496 * 109.47023 * 329.99947 * 9 7 5 13 13 C 1.53008 * 109.46924 * 120.00294 * 2 1 3 14 14 N 1.46902 * 109.46622 * 299.99642 * 13 2 1 15 15 C 1.46906 * 110.99573 * 179.97438 * 14 13 2 16 16 C 1.50699 * 109.46990 * 180.02562 * 15 14 13 17 17 C 1.38170 * 120.01346 * 259.72435 * 16 15 14 18 18 C 1.38437 * 120.02645 * 179.79260 * 17 16 15 19 19 F 1.35104 * 119.96868 * 180.25507 * 18 17 16 20 20 C 1.38473 * 120.06176 * 0.46218 * 18 17 16 21 21 C 1.38123 * 120.02905 * 359.78790 * 20 18 17 22 22 C 1.38685 * 120.01262 * 79.99818 * 16 15 14 23 23 O 1.35938 * 120.03312 * 359.97438 * 22 16 15 24 24 H 1.09000 * 109.46982 * 300.00666 * 1 2 3 25 25 H 1.09001 * 109.46986 * 59.99735 * 1 2 3 26 26 H 1.08995 * 109.47521 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46981 * 179.97438 * 3 2 1 28 28 H 1.08991 * 109.47245 * 299.99592 * 3 2 1 29 29 H 1.08999 * 109.46856 * 59.99981 * 3 2 1 30 30 H 1.09006 * 109.46807 * 180.02562 * 4 2 1 31 31 H 1.08995 * 109.47458 * 300.00613 * 4 2 1 32 32 H 0.96997 * 119.99459 * 180.02562 * 8 7 5 33 33 H 1.08990 * 109.46924 * 179.97438 * 13 2 1 34 34 H 1.09004 * 109.46978 * 59.99658 * 13 2 1 35 35 H 1.00896 * 111.00219 * 303.95583 * 14 13 2 36 36 H 1.09002 * 109.46991 * 299.99841 * 15 14 13 37 37 H 1.09000 * 109.47202 * 60.00133 * 15 14 13 38 38 H 1.07994 * 119.98557 * 0.02562 * 17 16 15 39 39 H 1.07999 * 119.98508 * 179.77331 * 20 18 17 40 40 H 1.08001 * 120.01373 * 179.97438 * 21 20 18 41 41 H 0.96704 * 114.00283 * 90.00087 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 1 0.9166 0.8671 -2.3806 7 6 1.8712 -0.4816 -3.7320 8 7 2.6280 -1.5505 -3.8526 9 14 1.2481 0.3987 -5.2572 10 1 2.2257 1.4410 -5.6612 11 1 1.0839 -0.5806 -6.3615 12 1 -0.0604 1.0353 -4.9614 13 6 2.0400 -0.7214 1.2493 14 7 1.5503 -0.0288 2.4487 15 6 2.0208 -0.6953 3.6704 16 6 1.4992 0.0413 4.8771 17 6 2.3198 0.9192 5.5590 18 6 1.8396 1.5992 6.6651 19 9 2.6415 2.4612 7.3279 20 6 0.5396 1.3936 7.0953 21 6 -0.2813 0.5127 6.4186 22 6 0.1970 -0.1659 5.3071 23 8 -0.6098 -1.0331 4.6401 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4423 0.0005 28 1 1.6769 1.9563 -0.8899 29 1 1.6768 1.9563 0.8900 30 1 3.1300 -0.7218 -1.2490 31 1 1.6766 -1.7490 -1.2493 32 1 2.8629 -1.8814 -4.7336 33 1 3.1299 -0.7218 1.2491 34 1 1.6765 -1.7490 1.2492 35 1 1.8197 0.9435 2.4402 36 1 1.6568 -1.7227 3.6869 37 1 3.1106 -0.6956 3.6874 38 1 3.3351 1.0777 5.2268 39 1 0.1674 1.9221 7.9605 40 1 -1.2951 0.3522 6.7546 41 1 -0.5667 -1.9419 4.9678 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809778419.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:52 Heat of formation + Delta-G solvation = -99.958565 kcal Electronic energy + Delta-G solvation = -21746.355689 eV Core-core repulsion = 18346.319557 eV Total energy + Delta-G solvation = -3400.036132 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.88320 -40.82816 -39.08555 -37.36450 -35.96172 -34.31234 -32.19090 -30.31043 -28.99487 -27.88897 -27.42489 -25.82876 -23.98530 -23.67658 -22.37091 -19.64064 -19.25331 -18.32880 -18.20236 -17.78367 -16.75981 -16.60483 -16.43452 -16.24778 -15.67951 -15.47910 -15.05494 -14.80607 -14.56639 -14.33593 -14.11828 -13.90043 -13.81164 -13.31625 -13.11784 -12.77946 -12.73349 -12.64233 -12.56470 -12.38244 -12.22585 -12.13205 -11.89263 -11.39208 -11.33191 -10.85469 -10.74475 -10.49441 -10.05961 -9.41402 -9.24370 -8.13319 -6.19973 0.06999 0.15213 1.41291 1.41827 1.52642 2.41957 2.45277 3.17959 3.20639 3.32916 3.47043 3.71457 3.80296 4.08558 4.17892 4.22014 4.33248 4.40027 4.51224 4.61192 4.78694 4.82171 4.88004 4.95423 4.97944 5.08613 5.11140 5.15124 5.22169 5.22872 5.44324 5.52600 5.55390 5.59236 5.66659 5.79016 5.88314 5.93867 6.08346 6.38408 6.49843 6.94325 6.95058 7.47200 8.99033 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.032219 B = 0.003159 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.851609 B = 8862.204978 C = 9102.886416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.055 4.055 3 C -0.122 4.122 4 C 0.041 3.959 5 C -0.514 4.514 6 H 0.064 0.936 7 C -0.004 4.004 8 N -0.937 5.937 9 Si 0.955 3.045 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.264 1.264 13 C 0.084 3.916 14 N -0.673 5.673 15 C 0.105 3.895 16 C -0.091 4.091 17 C -0.136 4.136 18 C 0.069 3.931 19 F -0.148 7.148 20 C -0.132 4.132 21 C -0.121 4.121 22 C 0.119 3.881 23 O -0.495 6.495 24 H 0.063 0.937 25 H 0.036 0.964 26 H 0.031 0.969 27 H 0.038 0.962 28 H 0.046 0.954 29 H 0.063 0.937 30 H -0.015 1.015 31 H -0.015 1.015 32 H 0.260 0.740 33 H 0.020 0.980 34 H 0.060 0.940 35 H 0.340 0.660 36 H 0.085 0.915 37 H 0.042 0.958 38 H 0.142 0.858 39 H 0.159 0.841 40 H 0.160 0.840 41 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.879 3.505 23.926 24.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.055 4.055 3 C -0.180 4.180 4 C 0.003 3.997 5 C -0.553 4.553 6 H 0.082 0.918 7 C -0.201 4.201 8 N -0.579 5.579 9 Si 0.781 3.219 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.188 1.188 13 C -0.045 4.045 14 N -0.305 5.305 15 C -0.024 4.024 16 C -0.092 4.092 17 C -0.156 4.156 18 C 0.049 3.951 19 F -0.127 7.127 20 C -0.151 4.151 21 C -0.139 4.139 22 C 0.074 3.926 23 O -0.308 6.308 24 H 0.082 0.918 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.003 0.997 31 H 0.004 0.996 32 H 0.068 0.932 33 H 0.038 0.962 34 H 0.079 0.921 35 H 0.160 0.840 36 H 0.104 0.896 37 H 0.060 0.940 38 H 0.160 0.840 39 H 0.177 0.823 40 H 0.177 0.823 41 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -4.532 3.577 23.495 24.194 hybrid contribution 1.311 0.006 -0.886 1.582 sum -3.222 3.584 22.609 23.117 Atomic orbital electron populations 1.21462 0.94404 1.00042 1.00177 1.20495 0.96195 0.95515 0.93336 1.21683 0.99497 0.95788 1.01007 1.18996 0.93972 0.94121 0.92562 1.21626 1.30179 1.11918 0.91532 0.91756 1.25906 0.95735 0.95896 1.02514 1.70106 1.38858 1.24914 1.24018 0.85588 0.79088 0.78253 0.78997 1.20077 1.21205 1.18804 1.21817 0.95851 0.97625 0.89178 1.60487 1.63560 1.06229 1.00258 1.20724 0.97015 0.98096 0.86526 1.20010 0.93486 0.98583 0.97098 1.21072 1.01572 0.97492 0.95419 1.17815 0.89995 0.93188 0.94058 1.91483 1.73376 1.67916 1.79900 1.21268 0.91668 1.00054 1.02121 1.21523 1.01434 0.96943 0.93994 1.18442 0.88339 0.94526 0.91319 1.84906 1.63514 1.22856 1.59503 0.91823 0.94522 0.95027 0.94307 0.93504 0.91800 0.99675 0.99616 0.93162 0.96196 0.92138 0.84049 0.89626 0.93958 0.84020 0.82295 0.82275 0.73545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.06 8.06 71.98 0.58 -3.48 16 2 C -0.06 -2.21 0.60 -52.18 -0.03 -2.24 16 3 C -0.12 -4.51 7.89 71.98 0.57 -3.94 16 4 C 0.04 2.14 4.04 29.85 0.12 2.26 16 5 C -0.51 -28.72 7.65 25.60 0.20 -28.53 16 6 H 0.06 3.46 5.68 -2.91 -0.02 3.45 16 7 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 8 N -0.94 -57.52 13.29 21.45 0.28 -57.24 16 9 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 13 C 0.08 2.85 4.65 86.31 0.40 3.25 16 14 N -0.67 -18.59 5.70 -517.91 -2.95 -21.55 16 15 C 0.10 2.33 5.48 85.56 0.47 2.80 16 16 C -0.09 -1.83 5.41 -19.77 -0.11 -1.93 16 17 C -0.14 -2.62 9.64 22.30 0.22 -2.41 16 18 C 0.07 1.30 7.30 22.37 0.16 1.46 16 19 F -0.15 -3.06 17.27 44.97 0.78 -2.28 16 20 C -0.13 -2.02 10.02 22.30 0.22 -1.79 16 21 C -0.12 -1.83 9.98 22.36 0.22 -1.61 16 22 C 0.12 2.25 6.68 22.50 0.15 2.40 16 23 O -0.50 -9.32 12.73 -92.85 -1.18 -10.50 16 24 H 0.06 2.24 7.60 -2.39 -0.02 2.22 16 25 H 0.04 1.53 6.62 -2.39 -0.02 1.51 16 26 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.05 1.88 6.62 -2.39 -0.02 1.86 16 29 H 0.06 1.95 6.57 -2.39 -0.02 1.94 16 30 H -0.02 -0.86 8.14 -2.38 -0.02 -0.88 16 31 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 32 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 33 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 35 H 0.34 9.18 6.76 -89.70 -0.61 8.57 16 36 H 0.09 1.83 7.85 -2.39 -0.02 1.81 16 37 H 0.04 0.89 8.00 -2.39 -0.02 0.87 16 38 H 0.14 2.47 8.03 -2.91 -0.02 2.45 16 39 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 40 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 41 H 0.41 3.81 9.06 -74.05 -0.67 3.14 16 Total: -1.00 -67.06 338.79 2.35 -64.71 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -0.23 Total: 13.57 kcal Atomic # 6 Polarization: -37.15 SS G_CDS: 3.63 Total: -33.51 kcal Atomic # 7 Polarization: -76.12 SS G_CDS: -2.67 Total: -78.78 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -1.18 Total: -10.50 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.78 Total: -2.28 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -67.06 2.35 -64.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809778419.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.253 kcal (2) G-P(sol) polarization free energy of solvation -67.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds