Wall clock time and date at job start Tue Mar 31 2020 05:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40299 * 126.84494 * 2 1 4 4 N 1.28736 * 108.17263 * 179.72944 * 3 2 1 5 5 C 1.33283 * 109.98627 * 0.45032 * 4 3 2 6 6 C 1.35799 * 108.86911 * 359.54222 * 5 4 3 7 7 N 1.39565 * 126.66973 * 180.22620 * 6 5 4 8 8 C 1.34775 * 120.00256 * 0.03166 * 7 6 5 9 9 O 1.21597 * 119.99698 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00217 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99765 * 179.97438 * 10 8 7 12 12 C 1.53007 * 109.46733 * 180.02562 * 11 10 8 13 13 C 1.52996 * 109.47104 * 300.00045 * 12 11 10 14 14 C 1.52993 * 109.46890 * 60.00252 * 12 11 10 15 15 C 1.53003 * 109.47006 * 180.02562 * 12 11 10 16 16 C 1.50692 * 109.47015 * 179.97438 * 15 12 11 17 17 H 1.08007 * 120.00151 * 0.02562 * 16 15 12 18 18 C 1.37881 * 119.99932 * 180.02562 * 16 15 12 19 19 N 1.31509 * 119.99685 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99950 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47189 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47236 * 119.99706 * 20 18 16 23 23 H 1.48494 * 109.47007 * 239.99820 * 20 18 16 24 24 H 1.09000 * 109.46703 * 269.99820 * 1 2 3 25 25 H 1.08998 * 109.46959 * 29.99184 * 1 2 3 26 26 H 1.08998 * 109.47135 * 149.99436 * 1 2 3 27 27 H 1.08002 * 125.56798 * 179.81472 * 5 4 3 28 28 H 0.96996 * 119.99867 * 180.02562 * 7 6 5 29 29 H 0.96996 * 119.99906 * 0.02562 * 10 8 7 30 30 H 1.08994 * 109.47438 * 300.00107 * 11 10 8 31 31 H 1.08995 * 109.47266 * 60.00666 * 11 10 8 32 32 H 1.09001 * 109.47354 * 60.00186 * 13 12 11 33 33 H 1.08996 * 109.47301 * 179.97438 * 13 12 11 34 34 H 1.08999 * 109.47147 * 300.00243 * 13 12 11 35 35 H 1.09002 * 109.47635 * 60.00021 * 14 12 11 36 36 H 1.09005 * 109.47318 * 179.97438 * 14 12 11 37 37 H 1.09001 * 109.47558 * 299.99813 * 14 12 11 38 38 H 1.08998 * 109.46997 * 300.00432 * 15 12 11 39 39 H 1.08999 * 109.47041 * 59.99882 * 15 12 11 40 40 H 0.97009 * 119.99418 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.3064 1.1228 0.0000 4 7 3.5260 0.7106 0.0058 5 6 3.5566 -0.6218 -0.0002 6 6 2.2820 -1.0904 -0.0001 7 7 1.8859 -2.4287 -0.0009 8 6 2.8139 -3.4061 -0.0013 9 8 3.9962 -3.1219 -0.0014 10 7 2.4314 -4.6985 -0.0016 11 6 3.4402 -5.7609 -0.0026 12 6 2.7452 -7.1240 -0.0034 13 6 1.8713 -7.2516 1.2460 14 6 1.8708 -7.2498 -1.2525 15 6 3.7987 -8.2336 -0.0037 16 6 3.1142 -9.5761 -0.0039 17 1 2.0356 -9.6323 -0.0041 18 6 3.8649 -10.7326 -0.0037 19 7 5.1782 -10.6641 -0.0039 20 14 3.0164 -12.3968 -0.0046 21 1 1.5443 -12.2019 -0.0048 22 1 3.4159 -13.1555 -1.2170 23 1 3.4145 -13.1560 1.2080 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5137 26 1 -0.3633 -0.8899 -0.5139 27 1 4.4493 -1.2297 -0.0002 28 1 0.9428 -2.6554 -0.0012 29 1 1.4883 -4.9252 -0.0019 30 1 4.0625 -5.6703 -0.8928 31 1 4.0634 -5.6710 0.8871 32 1 1.1208 -6.4611 1.2467 33 1 1.3759 -8.2224 1.2452 34 1 2.4943 -7.1619 2.1359 35 1 2.4934 -7.1589 -2.1426 36 1 1.3760 -8.2211 -1.2533 37 1 1.1203 -6.4594 -1.2518 38 1 4.4217 -8.1428 -0.8935 39 1 4.4214 -8.1437 0.8864 40 1 5.7063 -11.4778 -0.0041 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809899282.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:02 Heat of formation + Delta-G solvation = 40.902911 kcal Electronic energy + Delta-G solvation = -21848.243922 eV Core-core repulsion = 18506.528714 eV Total energy + Delta-G solvation = -3341.715208 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.20230 -41.32811 -38.88652 -36.57411 -35.36236 -34.89489 -33.95315 -30.66637 -29.03384 -28.52157 -27.90954 -27.55391 -25.08159 -23.71723 -22.98102 -21.85198 -20.17038 -19.49887 -18.63304 -18.31164 -17.46094 -17.45115 -16.54203 -16.51836 -16.07027 -15.60285 -15.27859 -15.16706 -14.69889 -14.35410 -14.18637 -13.90201 -13.86491 -13.77817 -12.96063 -12.91050 -12.67252 -12.66079 -12.46122 -12.29439 -12.20426 -12.10448 -11.92723 -11.52944 -11.50278 -10.97261 -10.82202 -10.79658 -10.49544 -10.25751 -9.42540 -8.11847 -6.18902 0.20012 0.60653 1.43150 1.44178 1.45000 1.55583 1.70853 2.03055 2.45888 2.95922 3.23511 3.51750 3.80034 3.95009 4.04599 4.13348 4.26344 4.34208 4.49784 4.56435 4.70701 4.74431 4.77350 4.81880 5.01200 5.09684 5.17982 5.25557 5.39472 5.49029 5.56533 5.56736 5.58673 5.61549 5.72733 5.85406 5.94018 6.33711 6.75760 6.97455 7.14234 7.27689 7.49032 9.00746 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.045792 B = 0.002975 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.319144 B = 9408.066973 C = 9817.725559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.375 5.375 3 N -0.102 5.102 4 N -0.254 5.254 5 C -0.110 4.110 6 C 0.312 3.688 7 N -0.631 5.631 8 C 0.710 3.290 9 O -0.598 6.598 10 N -0.704 5.704 11 C 0.158 3.842 12 C -0.064 4.064 13 C -0.123 4.123 14 C -0.123 4.123 15 C 0.038 3.962 16 C -0.510 4.510 17 H 0.074 0.926 18 C -0.005 4.005 19 N -0.938 5.938 20 Si 0.955 3.045 21 H -0.255 1.255 22 H -0.287 1.287 23 H -0.287 1.287 24 H 0.105 0.895 25 H 0.113 0.887 26 H 0.119 0.881 27 H 0.193 0.807 28 H 0.432 0.568 29 H 0.416 0.584 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.053 0.947 37 H 0.074 0.926 38 H -0.013 1.013 39 H -0.013 1.013 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.037 15.974 -0.057 23.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.170 5.170 3 N -0.081 5.081 4 N -0.121 5.121 5 C -0.272 4.272 6 C 0.081 3.919 7 N -0.285 5.285 8 C 0.409 3.591 9 O -0.475 6.475 10 N -0.361 5.361 11 C 0.034 3.966 12 C -0.064 4.064 13 C -0.180 4.180 14 C -0.180 4.180 15 C 0.000 4.000 16 C -0.548 4.548 17 H 0.092 0.908 18 C -0.202 4.202 19 N -0.580 5.580 20 Si 0.781 3.219 21 H -0.179 1.179 22 H -0.213 1.213 23 H -0.213 1.213 24 H 0.124 0.876 25 H 0.131 0.869 26 H 0.138 0.862 27 H 0.210 0.790 28 H 0.273 0.727 29 H 0.255 0.745 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.006 0.994 39 H 0.006 0.994 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -15.865 17.577 -0.053 23.678 hybrid contribution -0.505 -2.481 0.007 2.532 sum -16.369 15.096 -0.046 22.268 Atomic orbital electron populations 1.22616 0.70098 1.07527 1.06316 1.50797 1.09768 1.02763 1.53641 1.81931 0.93825 1.05124 1.27195 1.74181 1.13800 1.12306 1.11853 1.23489 0.97942 0.90234 1.15513 1.18251 0.90885 0.81485 1.01328 1.41475 1.11219 0.99652 1.76189 1.15708 0.84181 0.81183 0.78014 1.90893 1.17227 1.81959 1.57415 1.44890 1.11555 1.02124 1.77488 1.21228 0.89624 0.84731 1.01003 1.20716 0.96587 0.91868 0.97253 1.21714 0.98734 1.01932 0.95649 1.21714 0.98738 1.01932 0.95646 1.18986 0.93402 0.93031 0.94555 1.21638 0.93628 0.91231 1.48327 0.90800 1.25920 0.95331 1.03301 0.95673 1.70124 1.06144 1.28941 1.52786 0.85541 0.79463 0.79782 0.77119 1.17899 1.21294 1.21303 0.87642 0.86859 0.86237 0.79041 0.72724 0.74497 0.92907 0.92912 0.90743 0.92749 0.94387 0.94382 0.92750 0.90727 0.99420 0.99424 0.93269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.35 11.39 127.77 1.46 1.81 16 2 N -0.37 -6.70 4.09 -365.80 -1.49 -8.19 16 3 N -0.10 -2.68 13.81 37.02 0.51 -2.17 16 4 N -0.25 -7.80 12.32 -58.26 -0.72 -8.51 16 5 C -0.11 -3.19 10.76 83.91 0.90 -2.29 16 6 C 0.31 6.69 7.76 130.90 1.02 7.70 16 7 N -0.63 -9.82 5.43 -321.74 -1.75 -11.57 16 8 C 0.71 16.71 8.53 179.06 1.53 18.24 16 9 O -0.60 -19.84 13.51 -4.02 -0.05 -19.90 16 10 N -0.70 -14.63 4.96 -478.52 -2.37 -17.00 16 11 C 0.16 4.79 4.56 86.38 0.39 5.18 16 12 C -0.06 -2.10 0.54 -52.18 -0.03 -2.13 16 13 C -0.12 -3.53 8.05 71.98 0.58 -2.95 16 14 C -0.12 -3.52 8.05 71.98 0.58 -2.94 16 15 C 0.04 1.80 4.04 29.85 0.12 1.92 16 16 C -0.51 -25.91 7.65 25.60 0.20 -25.71 16 17 H 0.07 3.48 5.68 -2.91 -0.02 3.47 16 18 C -0.01 -0.30 5.46 84.66 0.46 0.17 16 19 N -0.94 -55.62 13.29 21.45 0.28 -55.33 16 20 Si 0.95 42.16 29.54 68.60 2.03 44.18 16 21 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 22 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 23 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 24 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 25 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.12 -0.19 7.65 -2.39 -0.02 -0.21 16 27 H 0.19 6.22 5.83 -2.91 -0.02 6.21 16 28 H 0.43 2.37 8.17 -92.71 -0.76 1.61 16 29 H 0.42 5.48 6.18 -92.71 -0.57 4.91 16 30 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.07 1.43 6.86 -2.39 -0.02 1.41 16 33 H 0.05 1.73 6.62 -2.39 -0.02 1.72 16 34 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.05 1.73 6.62 -2.38 -0.02 1.71 16 37 H 0.07 1.43 6.86 -2.39 -0.02 1.41 16 38 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 39 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 40 H 0.26 14.58 8.31 -92.70 -0.77 13.81 16 Total: -1.00 -75.51 328.95 3.39 -72.12 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -0.25 Total: 7.38 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 7.20 Total: -1.01 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -5.54 Total: -102.78 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.05 Total: -19.90 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.18 kcal Total: -75.51 3.39 -72.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809899282.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.026 kcal (2) G-P(sol) polarization free energy of solvation -75.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds