Wall clock time and date at job start Tue Mar 31 2020 05:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46903 * 110.99768 * 2 1 4 4 C 1.53000 * 109.47255 * 199.82878 * 3 2 1 5 5 O 1.42908 * 109.47282 * 64.43535 * 4 3 2 6 6 C 1.42898 * 113.99748 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.46753 * 180.02562 * 6 5 4 8 8 H 1.08009 * 120.00285 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00356 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99217 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00486 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46881 * 59.99806 * 11 9 7 13 13 H 1.48497 * 109.47221 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47314 * 300.00122 * 11 9 7 15 15 C 1.46900 * 111.00451 * 123.95109 * 2 1 3 16 16 C 1.53004 * 109.46922 * 66.04881 * 15 2 1 17 17 C 1.50690 * 109.47082 * 180.02562 * 16 15 2 18 18 C 1.38221 * 120.01366 * 100.00027 * 17 16 15 19 19 C 1.38227 * 120.02742 * 179.97438 * 18 17 16 20 20 C 1.38270 * 120.04824 * 0.02562 * 19 18 17 21 21 C 1.38178 * 120.02813 * 0.02562 * 20 19 18 22 22 C 1.38447 * 120.01558 * 279.72201 * 17 16 15 23 23 F 1.35101 * 120.02105 * 0.02562 * 22 17 16 24 24 H 1.08997 * 109.47030 * 290.80193 * 1 2 3 25 25 H 1.08997 * 109.46835 * 50.80681 * 1 2 3 26 26 H 1.09000 * 109.46548 * 170.80723 * 1 2 3 27 27 H 1.09006 * 109.47039 * 319.82445 * 3 2 1 28 28 H 1.08996 * 109.47533 * 79.82776 * 3 2 1 29 29 H 1.09000 * 109.47249 * 184.43266 * 4 3 2 30 30 H 1.08997 * 109.47208 * 304.43362 * 4 3 2 31 31 H 1.09001 * 109.47264 * 299.99475 * 6 5 4 32 32 H 1.08991 * 109.47298 * 60.00109 * 6 5 4 33 33 H 0.97007 * 119.99107 * 180.02562 * 10 9 7 34 34 H 1.08995 * 109.47094 * 306.05287 * 15 2 1 35 35 H 1.08999 * 109.47486 * 186.04767 * 15 2 1 36 36 H 1.09005 * 109.47210 * 59.99817 * 16 15 2 37 37 H 1.08999 * 109.46947 * 300.00217 * 16 15 2 38 38 H 1.07998 * 119.98898 * 359.97438 * 18 17 16 39 39 H 1.07999 * 119.97680 * 179.97438 * 19 18 17 40 40 H 1.08006 * 119.98207 * 179.97438 * 20 19 18 41 41 H 1.07995 * 120.01079 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.4450 1.3614 -0.4893 5 8 3.4853 0.9289 -1.8508 6 6 4.8006 0.8831 -2.4073 7 6 4.7244 0.4171 -3.8385 8 1 3.7673 0.1794 -4.2789 9 6 5.8767 0.2933 -4.5855 10 7 7.0422 0.5823 -4.0491 11 14 5.7824 -0.2849 -6.3592 12 1 4.9460 0.6588 -7.1436 13 1 7.1492 -0.3324 -6.9377 14 1 5.1768 -1.6400 -6.4067 15 6 1.9956 -0.7659 1.1376 16 6 1.6317 -2.2426 0.9704 17 6 2.1712 -3.0282 2.1376 18 6 1.3342 -3.3817 3.1792 19 6 1.8287 -4.1028 4.2498 20 6 3.1612 -4.4708 4.2803 21 6 4.0001 -4.1176 3.2407 22 6 3.5042 -3.4012 2.1644 23 9 4.3221 -3.0606 1.1445 24 1 -0.3633 0.3650 0.9607 25 1 -0.3633 0.6494 -0.7965 26 1 -0.3632 -1.0145 -0.1642 27 1 1.3925 1.9921 -0.6630 28 1 1.9562 1.7758 1.0114 29 1 3.8606 2.3663 -0.4149 30 1 4.0315 0.6792 0.1261 31 1 5.2447 1.8779 -2.3727 32 1 5.4148 0.1907 -1.8317 33 1 7.8528 0.4956 -4.5749 34 1 1.5612 -0.3872 2.0627 35 1 3.0798 -0.6610 1.1756 36 1 2.0660 -2.6213 0.0451 37 1 0.5474 -2.3475 0.9323 38 1 0.2934 -3.0944 3.1566 39 1 1.1741 -4.3782 5.0634 40 1 3.5466 -5.0339 5.1176 41 1 5.0409 -4.4049 3.2650 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815046573.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:46 Heat of formation + Delta-G solvation = -69.119825 kcal Electronic energy + Delta-G solvation = -21720.809583 eV Core-core repulsion = 18322.110719 eV Total energy + Delta-G solvation = -3398.698864 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.79967 -39.32369 -37.87800 -36.06619 -33.34699 -32.56526 -30.70736 -29.70002 -28.48766 -26.84375 -25.19124 -23.11164 -22.83839 -22.16470 -21.24328 -20.32742 -17.60269 -16.57980 -16.35064 -16.09666 -15.73788 -15.57790 -15.40992 -14.86871 -14.57892 -14.26607 -14.10994 -13.85704 -13.45433 -13.14931 -12.93077 -12.71980 -12.65589 -12.18530 -11.96756 -11.70050 -11.63448 -11.55264 -11.17336 -10.91436 -10.80136 -10.75298 -10.62071 -10.26830 -9.90892 -9.12742 -8.98948 -8.74331 -8.68667 -8.06335 -8.00009 -6.00836 -4.01385 1.00556 1.03319 3.39131 3.40515 3.40988 3.45605 4.02457 4.20755 4.43928 4.56514 4.66211 4.80313 4.94767 4.98395 5.10851 5.21591 5.22896 5.35493 5.39663 5.49166 5.54154 5.66888 5.72329 5.75213 5.89321 5.90886 5.97116 6.04204 6.09252 6.14521 6.19632 6.22668 6.32369 6.37720 6.75733 7.21754 7.28897 7.29337 7.56430 7.90644 8.28261 8.74151 9.13225 9.62907 11.10935 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016811 B = 0.003941 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.144240 B = 7103.917673 C = 8087.395408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.527 5.527 3 C 0.061 3.939 4 C 0.068 3.932 5 O -0.379 6.379 6 C 0.195 3.805 7 C -0.509 4.509 8 H 0.066 0.934 9 C 0.055 3.945 10 N -0.901 5.901 11 Si 0.907 3.093 12 H -0.275 1.275 13 H -0.287 1.287 14 H -0.275 1.275 15 C 0.063 3.937 16 C -0.078 4.078 17 C -0.112 4.112 18 C -0.091 4.091 19 C -0.134 4.134 20 C -0.099 4.099 21 C -0.155 4.155 22 C 0.106 3.894 23 F -0.127 7.127 24 H 0.018 0.982 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.039 0.961 29 H 0.037 0.963 30 H 0.035 0.965 31 H 0.001 0.999 32 H 0.003 0.997 33 H 0.263 0.737 34 H 0.029 0.971 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.014 -7.226 18.691 23.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.251 5.251 3 C -0.066 4.066 4 C -0.010 4.010 5 O -0.299 6.299 6 C 0.120 3.880 7 C -0.548 4.548 8 H 0.084 0.916 9 C -0.146 4.146 10 N -0.540 5.540 11 Si 0.734 3.266 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.200 1.200 15 C -0.065 4.065 16 C -0.116 4.116 17 C -0.113 4.113 18 C -0.109 4.109 19 C -0.152 4.152 20 C -0.117 4.117 21 C -0.174 4.174 22 C 0.086 3.914 23 F -0.106 7.106 24 H 0.037 0.963 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.098 0.902 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.019 0.981 32 H 0.021 0.979 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.790 -7.469 18.050 22.817 hybrid contribution 0.345 0.207 -0.121 0.420 sum -11.445 -7.262 17.929 22.476 Atomic orbital electron populations 1.22426 0.87854 1.02283 0.99701 1.61799 1.07039 1.13888 1.42393 1.22161 0.96803 0.88961 0.98710 1.22226 0.94478 0.97297 0.87028 1.87929 1.31769 1.87710 1.22481 1.20156 0.78959 0.95222 0.93636 1.21033 0.93701 1.44361 0.95663 0.91616 1.24943 0.94974 0.95630 0.99029 1.69967 0.97823 1.49132 1.37106 0.86413 0.76918 0.79408 0.83821 1.20086 1.21251 1.20020 1.22088 1.01000 0.92471 0.90924 1.20560 1.01123 0.93919 0.95989 1.20035 0.92348 1.00720 0.98207 1.20959 0.99600 0.97571 0.92767 1.21170 0.95746 0.99518 0.98743 1.20984 0.93479 0.99291 0.97929 1.21206 1.01370 1.00787 0.93997 1.17694 0.88280 0.98931 0.86482 1.91595 1.71635 1.90160 1.57186 0.96343 0.91312 0.91469 0.90154 0.94269 0.94466 0.94723 0.98139 0.97893 0.92751 0.95261 0.90410 0.89122 0.90569 0.85269 0.85565 0.85274 0.84747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.23 60.07 0.55 0.87 16 2 N -0.53 -8.27 4.63 -242.92 -1.13 -9.39 16 3 C 0.06 0.97 5.39 -3.82 -0.02 0.95 16 4 C 0.07 1.35 6.13 37.16 0.23 1.57 16 5 O -0.38 -9.70 10.27 -35.23 -0.36 -10.06 16 6 C 0.19 5.63 5.69 36.01 0.20 5.83 16 7 C -0.51 -15.65 9.43 -34.44 -0.32 -15.97 16 8 H 0.07 2.01 7.81 -52.48 -0.41 1.60 16 9 C 0.05 1.64 5.46 -17.82 -0.10 1.55 16 10 N -0.90 -27.88 13.29 55.43 0.74 -27.15 16 11 Si 0.91 22.61 29.54 -169.99 -5.02 17.59 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 15 C 0.06 0.89 4.76 -3.82 -0.02 0.87 16 16 C -0.08 -1.01 4.99 -27.89 -0.14 -1.15 16 17 C -0.11 -1.34 5.14 -104.56 -0.54 -1.88 16 18 C -0.09 -0.86 9.67 -39.59 -0.38 -1.24 16 19 C -0.13 -1.10 10.05 -39.57 -0.40 -1.50 16 20 C -0.10 -0.85 10.04 -39.59 -0.40 -1.25 16 21 C -0.15 -1.66 10.03 -39.52 -0.40 -2.06 16 22 C 0.11 1.40 7.24 -39.42 -0.29 1.12 16 23 F -0.13 -2.09 16.66 2.25 0.04 -2.06 16 24 H 0.02 0.19 8.07 -51.93 -0.42 -0.23 16 25 H 0.07 0.84 7.85 -51.93 -0.41 0.43 16 26 H 0.07 0.76 6.73 -51.93 -0.35 0.41 16 27 H 0.08 1.25 7.74 -51.93 -0.40 0.85 16 28 H 0.04 0.52 8.00 -51.93 -0.42 0.11 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.03 0.69 6.68 -51.93 -0.35 0.34 16 31 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 32 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 33 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 34 H 0.03 0.37 8.07 -51.93 -0.42 -0.05 16 35 H 0.08 1.25 6.58 -51.93 -0.34 0.91 16 36 H 0.09 1.39 7.94 -51.93 -0.41 0.98 16 37 H 0.08 0.83 6.53 -51.93 -0.34 0.49 16 38 H 0.13 0.95 8.04 -52.49 -0.42 0.52 16 39 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.13 0.77 8.06 -52.48 -0.42 0.34 16 41 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 345.91 15.07 5.21 5.21 Total: -1.00 -33.80 345.91 -8.89 -42.69 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -6.36 Total: -4.54 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -2.01 Total: -12.28 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: -0.39 Total: -36.54 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: -0.36 Total: -10.06 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.80 -8.89 -42.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815046573.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.431 kcal (2) G-P(sol) polarization free energy of solvation -33.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds