Wall clock time and date at job start Tue Mar 31 2020 05:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46903 * 110.99768 * 2 1 4 4 C 1.53000 * 109.47255 * 199.82878 * 3 2 1 5 5 O 1.42908 * 109.47282 * 64.43535 * 4 3 2 6 6 C 1.42898 * 113.99748 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.46753 * 180.02562 * 6 5 4 8 8 H 1.08009 * 120.00285 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00356 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99217 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00486 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46881 * 59.99806 * 11 9 7 13 13 H 1.48497 * 109.47221 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47314 * 300.00122 * 11 9 7 15 15 C 1.46900 * 111.00451 * 123.95109 * 2 1 3 16 16 C 1.53004 * 109.46922 * 66.04881 * 15 2 1 17 17 C 1.50690 * 109.47082 * 180.02562 * 16 15 2 18 18 C 1.38221 * 120.01366 * 100.00027 * 17 16 15 19 19 C 1.38227 * 120.02742 * 179.97438 * 18 17 16 20 20 C 1.38270 * 120.04824 * 0.02562 * 19 18 17 21 21 C 1.38178 * 120.02813 * 0.02562 * 20 19 18 22 22 C 1.38447 * 120.01558 * 279.72201 * 17 16 15 23 23 F 1.35101 * 120.02105 * 0.02562 * 22 17 16 24 24 H 1.08997 * 109.47030 * 290.80193 * 1 2 3 25 25 H 1.08997 * 109.46835 * 50.80681 * 1 2 3 26 26 H 1.09000 * 109.46548 * 170.80723 * 1 2 3 27 27 H 1.09006 * 109.47039 * 319.82445 * 3 2 1 28 28 H 1.08996 * 109.47533 * 79.82776 * 3 2 1 29 29 H 1.09000 * 109.47249 * 184.43266 * 4 3 2 30 30 H 1.08997 * 109.47208 * 304.43362 * 4 3 2 31 31 H 1.09001 * 109.47264 * 299.99475 * 6 5 4 32 32 H 1.08991 * 109.47298 * 60.00109 * 6 5 4 33 33 H 0.97007 * 119.99107 * 180.02562 * 10 9 7 34 34 H 1.08995 * 109.47094 * 306.05287 * 15 2 1 35 35 H 1.08999 * 109.47486 * 186.04767 * 15 2 1 36 36 H 1.09005 * 109.47210 * 59.99817 * 16 15 2 37 37 H 1.08999 * 109.46947 * 300.00217 * 16 15 2 38 38 H 1.07998 * 119.98898 * 359.97438 * 18 17 16 39 39 H 1.07999 * 119.97680 * 179.97438 * 19 18 17 40 40 H 1.08006 * 119.98207 * 179.97438 * 20 19 18 41 41 H 1.07995 * 120.01079 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.4450 1.3614 -0.4893 5 8 3.4853 0.9289 -1.8508 6 6 4.8006 0.8831 -2.4073 7 6 4.7244 0.4171 -3.8385 8 1 3.7673 0.1794 -4.2789 9 6 5.8767 0.2933 -4.5855 10 7 7.0422 0.5823 -4.0491 11 14 5.7824 -0.2849 -6.3592 12 1 4.9460 0.6588 -7.1436 13 1 7.1492 -0.3324 -6.9377 14 1 5.1768 -1.6400 -6.4067 15 6 1.9956 -0.7659 1.1376 16 6 1.6317 -2.2426 0.9704 17 6 2.1712 -3.0282 2.1376 18 6 1.3342 -3.3817 3.1792 19 6 1.8287 -4.1028 4.2498 20 6 3.1612 -4.4708 4.2803 21 6 4.0001 -4.1176 3.2407 22 6 3.5042 -3.4012 2.1644 23 9 4.3221 -3.0606 1.1445 24 1 -0.3633 0.3650 0.9607 25 1 -0.3633 0.6494 -0.7965 26 1 -0.3632 -1.0145 -0.1642 27 1 1.3925 1.9921 -0.6630 28 1 1.9562 1.7758 1.0114 29 1 3.8606 2.3663 -0.4149 30 1 4.0315 0.6792 0.1261 31 1 5.2447 1.8779 -2.3727 32 1 5.4148 0.1907 -1.8317 33 1 7.8528 0.4956 -4.5749 34 1 1.5612 -0.3872 2.0627 35 1 3.0798 -0.6610 1.1756 36 1 2.0660 -2.6213 0.0451 37 1 0.5474 -2.3475 0.9323 38 1 0.2934 -3.0944 3.1566 39 1 1.1741 -4.3782 5.0634 40 1 3.5466 -5.0339 5.1176 41 1 5.0409 -4.4049 3.2650 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815046573.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:46 Heat of formation + Delta-G solvation = -90.829648 kcal Electronic energy + Delta-G solvation = -21721.750992 eV Core-core repulsion = 18322.110719 eV Total energy + Delta-G solvation = -3399.640273 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.90412 -40.16667 -39.21155 -37.81600 -34.96003 -34.21580 -31.49667 -31.16062 -29.52194 -28.92969 -26.31784 -24.54757 -24.18185 -23.67966 -22.27187 -21.50963 -18.64230 -18.48886 -17.57550 -17.46087 -17.15679 -16.87694 -16.58619 -16.40935 -15.84432 -15.80908 -15.44270 -15.08674 -14.82435 -14.37914 -14.04453 -13.89112 -13.58381 -13.56819 -13.48659 -13.10780 -12.86292 -12.75050 -12.69220 -12.57800 -12.33231 -12.21357 -11.93787 -11.83714 -11.57715 -11.26592 -10.85710 -10.19792 -9.90435 -9.60115 -9.16059 -8.32116 -6.44679 0.19512 0.26947 1.37993 1.44163 1.52344 2.34756 2.62897 2.93448 3.01138 3.24582 3.36749 3.75207 3.79757 3.97415 4.10288 4.17231 4.18563 4.31726 4.39167 4.40935 4.44577 4.55585 4.57985 4.66926 4.70373 4.80429 4.86278 4.93162 4.98199 5.04272 5.11105 5.16779 5.19118 5.28892 5.44388 5.47726 5.54457 5.96323 5.98184 6.11033 6.21951 6.56103 6.84759 7.27355 8.80464 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016811 B = 0.003941 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.144240 B = 7103.917673 C = 8087.395408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.562 5.562 3 C 0.071 3.929 4 C 0.058 3.942 5 O -0.393 6.393 6 C 0.211 3.789 7 C -0.547 4.547 8 H 0.061 0.939 9 C 0.004 3.996 10 N -0.933 5.933 11 Si 0.985 3.015 12 H -0.262 1.262 13 H -0.273 1.273 14 H -0.267 1.267 15 C 0.070 3.930 16 C -0.070 4.070 17 C -0.126 4.126 18 C -0.088 4.088 19 C -0.123 4.123 20 C -0.093 4.093 21 C -0.165 4.165 22 C 0.061 3.939 23 F -0.161 7.161 24 H 0.043 0.957 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.047 0.953 30 H 0.025 0.975 31 H -0.016 1.016 32 H -0.025 1.025 33 H 0.271 0.729 34 H 0.053 0.947 35 H 0.044 0.956 36 H 0.051 0.949 37 H 0.101 0.899 38 H 0.157 0.843 39 H 0.164 0.836 40 H 0.162 0.838 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.253 -8.028 19.974 25.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.286 5.286 3 C -0.057 4.057 4 C -0.020 4.020 5 O -0.313 6.313 6 C 0.136 3.864 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.194 4.194 10 N -0.572 5.572 11 Si 0.808 3.192 12 H -0.187 1.187 13 H -0.198 1.198 14 H -0.192 1.192 15 C -0.058 4.058 16 C -0.108 4.108 17 C -0.128 4.128 18 C -0.106 4.106 19 C -0.141 4.141 20 C -0.111 4.111 21 C -0.183 4.183 22 C 0.042 3.958 23 F -0.140 7.140 24 H 0.061 0.939 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.044 0.956 31 H 0.002 0.998 32 H -0.008 1.008 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.119 0.881 38 H 0.174 0.826 39 H 0.181 0.819 40 H 0.179 0.821 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.047 -8.265 19.361 25.308 hybrid contribution 1.027 0.437 -0.354 1.171 sum -13.020 -7.828 19.007 24.333 Atomic orbital electron populations 1.22449 0.85469 1.03039 1.00988 1.61719 1.09384 1.13772 1.43744 1.22063 0.93633 0.89757 1.00245 1.22599 0.98014 0.97272 0.84094 1.87881 1.29629 1.88145 1.25622 1.19760 0.80101 0.93299 0.93284 1.21354 0.94157 1.46158 0.96781 0.92075 1.26017 0.94127 0.94875 1.04366 1.70085 0.98703 1.49100 1.39295 0.85207 0.77776 0.79172 0.77081 1.18666 1.19762 1.19185 1.22000 0.99076 0.93221 0.91493 1.20438 1.02229 0.93168 0.94934 1.20076 0.92198 1.01523 0.98961 1.21294 1.00426 0.96938 0.91952 1.21646 0.95923 0.97585 0.98908 1.21412 0.93551 0.98441 0.97701 1.21424 1.02261 1.00639 0.94006 1.18225 0.89025 1.01531 0.87033 1.91503 1.72705 1.90882 1.58891 0.93861 0.91495 0.90596 0.89690 0.90984 0.93471 0.95647 0.99824 1.00771 0.92056 0.92864 0.93736 0.93011 0.88095 0.82553 0.81854 0.82059 0.84307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 9.23 127.69 1.18 1.81 16 2 N -0.56 -17.49 4.63 -922.45 -4.27 -21.76 16 3 C 0.07 2.21 5.39 86.30 0.47 2.67 16 4 C 0.06 2.38 6.13 71.98 0.44 2.82 16 5 O -0.39 -21.08 10.27 -148.98 -1.53 -22.61 16 6 C 0.21 12.88 5.69 71.24 0.41 13.28 16 7 C -0.55 -34.78 9.43 25.60 0.24 -34.54 16 8 H 0.06 3.84 7.81 -2.91 -0.02 3.82 16 9 C 0.00 0.26 5.46 84.65 0.46 0.72 16 10 N -0.93 -58.95 13.29 21.45 0.28 -58.66 16 11 Si 0.99 46.58 29.54 68.60 2.03 48.61 16 12 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 13 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 14 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 15 C 0.07 1.99 4.76 86.30 0.41 2.40 16 16 C -0.07 -1.84 4.99 29.85 0.15 -1.69 16 17 C -0.13 -3.02 5.14 -19.82 -0.10 -3.13 16 18 C -0.09 -1.42 9.67 22.26 0.22 -1.21 16 19 C -0.12 -1.56 10.05 22.27 0.22 -1.33 16 20 C -0.09 -1.36 10.04 22.26 0.22 -1.13 16 21 C -0.16 -3.54 10.03 22.31 0.22 -3.32 16 22 C 0.06 1.72 7.24 22.38 0.16 1.88 16 23 F -0.16 -5.93 16.66 44.97 0.75 -5.19 16 24 H 0.04 0.77 8.07 -2.39 -0.02 0.75 16 25 H 0.07 1.53 7.85 -2.39 -0.02 1.51 16 26 H 0.08 1.56 6.73 -2.39 -0.02 1.55 16 27 H 0.08 2.56 7.74 -2.38 -0.02 2.54 16 28 H 0.07 1.78 8.00 -2.39 -0.02 1.77 16 29 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.03 1.09 6.68 -2.39 -0.02 1.07 16 31 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 32 H -0.03 -1.66 8.14 -2.39 -0.02 -1.68 16 33 H 0.27 15.81 8.31 -92.70 -0.77 15.04 16 34 H 0.05 1.24 8.07 -2.39 -0.02 1.22 16 35 H 0.04 1.54 6.58 -2.39 -0.02 1.52 16 36 H 0.05 1.74 7.94 -2.38 -0.02 1.72 16 37 H 0.10 2.05 6.53 -2.39 -0.02 2.04 16 38 H 0.16 1.62 8.04 -2.91 -0.02 1.60 16 39 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 40 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 41 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -77.38 345.91 2.96 -74.43 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: 1.00 Total: 5.95 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: 4.70 Total: -20.76 kcal Atomic # 7 Polarization: -76.44 SS G_CDS: -3.99 Total: -80.42 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -1.53 Total: -22.61 kcal Atomic # 9 Polarization: -5.93 SS G_CDS: 0.75 Total: -5.19 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -77.38 2.96 -74.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815046573.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.405 kcal (2) G-P(sol) polarization free energy of solvation -77.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds