Wall clock time and date at job start Tue Mar 31 2020 05:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47266 * 2 1 4 4 N 1.46906 * 109.46958 * 119.99823 * 2 1 3 5 5 C 1.46902 * 110.99573 * 299.99941 * 4 2 1 6 6 C 1.53008 * 109.46622 * 179.97438 * 5 4 2 7 7 O 1.42900 * 109.47139 * 65.00304 * 6 5 4 8 8 C 1.42896 * 113.99930 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47067 * 180.02562 * 8 7 6 10 10 H 1.07993 * 120.00088 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99786 * 180.02562 * 9 8 7 12 12 N 1.31519 * 120.00415 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99767 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47386 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.47080 * 119.99715 * 13 11 9 16 16 H 1.48499 * 109.46977 * 239.99692 * 13 11 9 17 17 C 1.50699 * 109.47163 * 239.99585 * 2 1 3 18 18 C 1.38246 * 119.97538 * 239.73047 * 17 2 1 19 19 C 1.38193 * 120.02523 * 179.72847 * 18 17 2 20 20 C 1.38458 * 119.97553 * 0.56587 * 19 18 17 21 21 F 1.35102 * 120.02872 * 179.68743 * 20 19 18 22 22 C 1.38460 * 119.94702 * 359.70511 * 20 19 18 23 23 C 1.38198 * 119.97307 * 0.02562 * 22 20 19 24 24 H 1.08997 * 109.47598 * 300.00446 * 1 2 3 25 25 H 1.09002 * 109.46781 * 60.00248 * 1 2 3 26 26 H 1.09000 * 109.47321 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47331 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47018 * 299.99607 * 3 2 1 29 29 H 1.08999 * 109.47836 * 59.99633 * 3 2 1 30 30 H 1.00896 * 111.00309 * 176.04353 * 4 2 1 31 31 H 1.08990 * 109.47358 * 299.99539 * 5 4 2 32 32 H 1.09004 * 109.47457 * 60.00221 * 5 4 2 33 33 H 1.09007 * 109.46775 * 185.00154 * 6 5 4 34 34 H 1.09003 * 109.47223 * 304.99930 * 6 5 4 35 35 H 1.09002 * 109.46714 * 299.99500 * 8 7 6 36 36 H 1.08996 * 109.47413 * 59.99182 * 8 7 6 37 37 H 0.97001 * 120.00141 * 180.02562 * 12 11 9 38 38 H 1.08001 * 119.98316 * 359.97438 * 18 17 2 39 39 H 1.08006 * 120.01403 * 180.25484 * 19 18 17 40 40 H 1.08000 * 120.01196 * 179.97438 * 22 20 19 41 41 H 1.08004 * 119.98599 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.5485 -0.0262 2.4211 6 6 2.0771 -0.7748 3.6464 7 8 3.5020 -0.6756 3.6872 8 6 4.0997 -1.3452 4.7991 9 6 5.5960 -1.1757 4.7425 10 1 6.0456 -0.6132 3.9377 11 6 6.3910 -1.7395 5.7177 12 7 5.8435 -2.4249 6.6976 13 14 8.2459 -1.5299 5.6471 14 1 8.6079 -0.7231 4.4541 15 1 8.7128 -0.8365 6.8745 16 1 8.8917 -2.8641 5.5563 17 6 2.0323 -0.7105 -1.2304 18 6 2.8317 -1.8312 -1.1029 19 6 3.2883 -2.4868 -2.2305 20 6 2.9546 -2.0140 -3.4883 21 9 3.4056 -2.6505 -4.5914 22 6 2.1585 -0.8882 -3.6148 23 6 1.6985 -0.2375 -2.4858 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.0261 -0.7626 1.1911 31 1 1.9120 1.0011 2.4379 32 1 0.4586 -0.0264 2.4379 33 1 1.6561 -0.3347 4.5505 34 1 1.7875 -1.8238 3.5841 35 1 3.7208 -0.9173 5.7273 36 1 3.8520 -2.4060 4.7604 37 1 6.4029 -2.8213 7.3838 38 1 3.0961 -2.1967 -0.1216 39 1 3.9094 -3.3648 -2.1306 40 1 1.8979 -0.5183 -4.5955 41 1 1.0779 0.6409 -2.5842 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815069042.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:04 Heat of formation + Delta-G solvation = -73.377009 kcal Electronic energy + Delta-G solvation = -21668.185485 eV Core-core repulsion = 18269.302015 eV Total energy + Delta-G solvation = -3398.883470 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.95917 -39.95795 -37.54175 -36.30334 -32.92827 -32.08990 -31.18739 -29.30433 -28.07648 -27.39130 -26.57596 -23.38030 -22.86882 -22.34641 -21.36609 -19.44778 -17.86133 -16.70873 -16.44048 -16.09781 -15.66706 -15.65484 -15.26837 -14.83077 -14.51280 -14.19555 -14.07231 -13.69636 -13.39131 -13.35151 -13.19578 -12.95464 -12.54718 -12.18028 -12.08905 -11.80461 -11.59368 -11.36641 -11.21632 -10.99190 -10.86984 -10.73447 -10.68564 -10.55581 -10.02889 -9.17886 -9.11094 -8.84915 -8.65843 -8.25290 -8.19156 -6.12659 -4.14502 1.05371 1.16553 3.27777 3.34519 3.40405 3.50076 4.12596 4.19065 4.33425 4.51869 4.67729 4.79241 4.89065 4.97201 5.09243 5.20507 5.24060 5.32855 5.41530 5.51722 5.57231 5.61002 5.72369 5.75929 5.84397 5.94837 6.00623 6.05064 6.07933 6.14976 6.20076 6.26229 6.35518 6.47115 6.81303 7.09388 7.19663 7.41918 7.56137 7.77437 8.13479 8.55507 8.98946 9.50656 10.98845 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016367 B = 0.003735 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.362635 B = 7493.973489 C = 8692.208152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.148 3.852 3 C -0.179 4.179 4 N -0.676 5.676 5 C 0.061 3.939 6 C 0.061 3.939 7 O -0.399 6.399 8 C 0.197 3.803 9 C -0.514 4.514 10 H 0.066 0.934 11 C 0.057 3.943 12 N -0.898 5.898 13 Si 0.906 3.094 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.282 1.282 17 C -0.077 4.077 18 C -0.071 4.071 19 C -0.152 4.152 20 C 0.088 3.912 21 F -0.145 7.145 22 C -0.157 4.157 23 C -0.088 4.088 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.357 0.643 31 H 0.040 0.960 32 H 0.079 0.921 33 H 0.040 0.960 34 H 0.046 0.954 35 H 0.004 0.996 36 H 0.006 0.994 37 H 0.263 0.737 38 H 0.148 0.852 39 H 0.135 0.865 40 H 0.131 0.869 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.302 4.722 -17.477 21.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.057 3.943 3 C -0.238 4.238 4 N -0.309 5.309 5 C -0.068 4.068 6 C -0.017 4.017 7 O -0.319 6.319 8 C 0.123 3.877 9 C -0.553 4.553 10 H 0.084 0.916 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.734 3.266 14 H -0.195 1.195 15 H -0.209 1.209 16 H -0.208 1.208 17 C -0.078 4.078 18 C -0.090 4.090 19 C -0.171 4.171 20 C 0.069 3.931 21 F -0.123 7.123 22 C -0.176 4.176 23 C -0.107 4.107 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.178 0.822 31 H 0.058 0.942 32 H 0.097 0.903 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.021 0.979 36 H 0.024 0.976 37 H 0.073 0.927 38 H 0.166 0.834 39 H 0.153 0.847 40 H 0.149 0.851 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.626 4.224 -17.475 21.409 hybrid contribution 1.472 0.511 0.138 1.564 sum -10.154 4.736 -17.337 20.642 Atomic orbital electron populations 1.21894 0.93072 1.02727 1.01637 1.19729 0.95338 0.90954 0.88306 1.22569 1.02020 0.96814 1.02354 1.60737 1.18028 1.51985 1.00195 1.22069 0.99332 0.96374 0.89028 1.22309 0.84811 0.99043 0.95495 1.87785 1.16412 1.76941 1.50803 1.20172 0.93158 0.91229 0.83136 1.21084 0.90370 1.33583 1.10223 0.91590 1.24944 0.99478 0.95008 0.95034 1.69972 1.35701 1.34940 1.13097 0.86307 0.84298 0.77950 0.78087 1.19515 1.20858 1.20817 1.19843 0.97855 0.96085 0.93979 1.21132 0.94843 0.93860 0.99120 1.21238 1.02778 1.02091 0.90981 1.17766 0.98761 0.93776 0.82783 1.91482 1.87610 1.81233 1.52021 1.21031 1.00457 0.96091 1.00029 1.20774 0.99353 0.99493 0.91042 0.92031 0.92391 0.91604 0.92100 0.92202 0.91643 0.82219 0.94176 0.90316 0.94184 0.93576 0.97866 0.97621 0.92699 0.83434 0.84719 0.85081 0.85319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.05 37.16 0.30 -1.00 16 2 C 0.15 1.64 0.79 -132.75 -0.11 1.53 16 3 C -0.18 -1.88 8.04 37.15 0.30 -1.58 16 4 N -0.68 -9.16 5.11 -101.14 -0.52 -9.68 16 5 C 0.06 0.85 5.32 -3.82 -0.02 0.83 16 6 C 0.06 1.09 6.28 37.16 0.23 1.33 16 7 O -0.40 -9.20 9.85 -35.23 -0.35 -9.55 16 8 C 0.20 5.32 5.69 36.00 0.20 5.53 16 9 C -0.51 -14.93 9.43 -34.44 -0.32 -15.26 16 10 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 13 Si 0.91 21.68 29.54 -169.99 -5.02 16.66 16 14 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 17 C -0.08 -0.87 4.77 -104.62 -0.50 -1.36 16 18 C -0.07 -0.87 9.14 -39.59 -0.36 -1.23 16 19 C -0.15 -1.79 10.03 -39.52 -0.40 -2.18 16 20 C 0.09 1.03 7.30 -39.42 -0.29 0.74 16 21 F -0.14 -1.78 17.27 2.25 0.04 -1.74 16 22 C -0.16 -1.59 10.03 -39.51 -0.40 -1.98 16 23 C -0.09 -0.86 8.71 -39.60 -0.34 -1.21 16 24 H 0.06 0.56 6.40 -51.93 -0.33 0.23 16 25 H 0.06 0.46 7.39 -51.93 -0.38 0.07 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.52 7.39 -51.93 -0.38 0.14 16 29 H 0.06 0.69 6.40 -51.93 -0.33 0.36 16 30 H 0.36 5.48 7.10 -39.29 -0.28 5.20 16 31 H 0.04 0.57 6.30 -51.93 -0.33 0.24 16 32 H 0.08 0.93 6.30 -51.93 -0.33 0.60 16 33 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 36 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.15 1.90 6.39 -52.49 -0.34 1.56 16 39 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 40 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.13 0.97 7.10 -52.48 -0.37 0.60 16 LS Contribution 337.28 15.07 5.08 5.08 Total: -1.00 -30.39 337.28 -7.83 -38.21 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.00 Total: 1.32 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -1.80 Total: -14.32 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.22 Total: -35.66 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -0.35 Total: -9.55 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.39 -7.83 -38.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815069042.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.165 kcal (2) G-P(sol) polarization free energy of solvation -30.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds