Wall clock time and date at job start Tue Mar 31 2020 05:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47266 * 2 1 4 4 N 1.46906 * 109.46958 * 119.99823 * 2 1 3 5 5 C 1.46902 * 110.99573 * 299.99941 * 4 2 1 6 6 C 1.53008 * 109.46622 * 179.97438 * 5 4 2 7 7 O 1.42900 * 109.47139 * 65.00304 * 6 5 4 8 8 C 1.42896 * 113.99930 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47067 * 180.02562 * 8 7 6 10 10 H 1.07993 * 120.00088 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99786 * 180.02562 * 9 8 7 12 12 N 1.31519 * 120.00415 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99767 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47386 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.47080 * 119.99715 * 13 11 9 16 16 H 1.48499 * 109.46977 * 239.99692 * 13 11 9 17 17 C 1.50699 * 109.47163 * 239.99585 * 2 1 3 18 18 C 1.38246 * 119.97538 * 239.73047 * 17 2 1 19 19 C 1.38193 * 120.02523 * 179.72847 * 18 17 2 20 20 C 1.38458 * 119.97553 * 0.56587 * 19 18 17 21 21 F 1.35102 * 120.02872 * 179.68743 * 20 19 18 22 22 C 1.38460 * 119.94702 * 359.70511 * 20 19 18 23 23 C 1.38198 * 119.97307 * 0.02562 * 22 20 19 24 24 H 1.08997 * 109.47598 * 300.00446 * 1 2 3 25 25 H 1.09002 * 109.46781 * 60.00248 * 1 2 3 26 26 H 1.09000 * 109.47321 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47331 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47018 * 299.99607 * 3 2 1 29 29 H 1.08999 * 109.47836 * 59.99633 * 3 2 1 30 30 H 1.00896 * 111.00309 * 176.04353 * 4 2 1 31 31 H 1.08990 * 109.47358 * 299.99539 * 5 4 2 32 32 H 1.09004 * 109.47457 * 60.00221 * 5 4 2 33 33 H 1.09007 * 109.46775 * 185.00154 * 6 5 4 34 34 H 1.09003 * 109.47223 * 304.99930 * 6 5 4 35 35 H 1.09002 * 109.46714 * 299.99500 * 8 7 6 36 36 H 1.08996 * 109.47413 * 59.99182 * 8 7 6 37 37 H 0.97001 * 120.00141 * 180.02562 * 12 11 9 38 38 H 1.08001 * 119.98316 * 359.97438 * 18 17 2 39 39 H 1.08006 * 120.01403 * 180.25484 * 19 18 17 40 40 H 1.08000 * 120.01196 * 179.97438 * 22 20 19 41 41 H 1.08004 * 119.98599 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.5485 -0.0262 2.4211 6 6 2.0771 -0.7748 3.6464 7 8 3.5020 -0.6756 3.6872 8 6 4.0997 -1.3452 4.7991 9 6 5.5960 -1.1757 4.7425 10 1 6.0456 -0.6132 3.9377 11 6 6.3910 -1.7395 5.7177 12 7 5.8435 -2.4249 6.6976 13 14 8.2459 -1.5299 5.6471 14 1 8.6079 -0.7231 4.4541 15 1 8.7128 -0.8365 6.8745 16 1 8.8917 -2.8641 5.5563 17 6 2.0323 -0.7105 -1.2304 18 6 2.8317 -1.8312 -1.1029 19 6 3.2883 -2.4868 -2.2305 20 6 2.9546 -2.0140 -3.4883 21 9 3.4056 -2.6505 -4.5914 22 6 2.1585 -0.8882 -3.6148 23 6 1.6985 -0.2375 -2.4858 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.0261 -0.7626 1.1911 31 1 1.9120 1.0011 2.4379 32 1 0.4586 -0.0264 2.4379 33 1 1.6561 -0.3347 4.5505 34 1 1.7875 -1.8238 3.5841 35 1 3.7208 -0.9173 5.7273 36 1 3.8520 -2.4060 4.7604 37 1 6.4029 -2.8213 7.3838 38 1 3.0961 -2.1967 -0.1216 39 1 3.9094 -3.3648 -2.1306 40 1 1.8979 -0.5183 -4.5955 41 1 1.0779 0.6409 -2.5842 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815069042.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:04 Heat of formation + Delta-G solvation = -91.404063 kcal Electronic energy + Delta-G solvation = -21668.967197 eV Core-core repulsion = 18269.302015 eV Total energy + Delta-G solvation = -3399.665181 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.87461 -40.84479 -38.88835 -37.69259 -34.97807 -33.33420 -32.07548 -30.27681 -29.63292 -28.38932 -28.06893 -24.61664 -24.25693 -23.72292 -22.56599 -20.35135 -18.81885 -18.58496 -17.60992 -17.37371 -17.12189 -16.70539 -16.57478 -16.33574 -15.76676 -15.43434 -15.21501 -14.97266 -14.49557 -14.41826 -14.08215 -14.02398 -13.83677 -13.46510 -13.21157 -13.04593 -12.88468 -12.79694 -12.62079 -12.37510 -12.31582 -12.06502 -11.90600 -11.71908 -11.62791 -11.25053 -10.87314 -10.21830 -10.02189 -9.56384 -9.26894 -8.32446 -6.44545 0.18404 0.32396 1.39771 1.40828 1.55292 2.34149 2.64453 3.01729 3.11811 3.24486 3.32088 3.65426 3.84647 3.99807 4.12905 4.16311 4.28458 4.39231 4.40495 4.52021 4.55196 4.70648 4.76242 4.81798 4.85953 4.89535 4.98702 5.00966 5.03782 5.14519 5.18492 5.19251 5.28137 5.35976 5.42256 5.54891 5.57002 5.95615 5.96255 6.19449 6.39440 6.54078 6.82668 7.27651 8.80081 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016367 B = 0.003735 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.362635 B = 7493.973489 C = 8692.208152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.149 3.851 3 C -0.175 4.175 4 N -0.685 5.685 5 C 0.072 3.928 6 C 0.053 3.947 7 O -0.407 6.407 8 C 0.212 3.788 9 C -0.546 4.546 10 H 0.062 0.938 11 C 0.007 3.993 12 N -0.931 5.931 13 Si 0.981 3.019 14 H -0.264 1.264 15 H -0.272 1.272 16 H -0.273 1.273 17 C -0.082 4.082 18 C -0.089 4.089 19 C -0.163 4.163 20 C 0.072 3.928 21 F -0.151 7.151 22 C -0.151 4.151 23 C -0.082 4.082 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.055 0.945 27 H 0.041 0.959 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.343 0.657 31 H 0.041 0.959 32 H 0.108 0.892 33 H 0.047 0.953 34 H 0.041 0.959 35 H -0.016 1.016 36 H -0.016 1.016 37 H 0.270 0.730 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.157 0.843 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.766 6.214 -18.861 23.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.058 3.942 3 C -0.234 4.234 4 N -0.317 5.317 5 C -0.056 4.056 6 C -0.024 4.024 7 O -0.327 6.327 8 C 0.137 3.863 9 C -0.583 4.583 10 H 0.080 0.920 11 C -0.192 4.192 12 N -0.570 5.570 13 Si 0.804 3.196 14 H -0.188 1.188 15 H -0.197 1.197 16 H -0.198 1.198 17 C -0.083 4.083 18 C -0.107 4.107 19 C -0.181 4.181 20 C 0.053 3.947 21 F -0.130 7.130 22 C -0.169 4.169 23 C -0.100 4.100 24 H 0.086 0.914 25 H 0.100 0.900 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.162 0.838 31 H 0.059 0.941 32 H 0.126 0.874 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.002 0.998 36 H 0.002 0.998 37 H 0.079 0.921 38 H 0.150 0.850 39 H 0.154 0.846 40 H 0.174 0.826 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -12.122 5.723 -18.872 23.148 hybrid contribution 1.521 0.035 0.546 1.617 sum -10.601 5.757 -18.326 21.940 Atomic orbital electron populations 1.21902 0.91420 1.02591 1.03167 1.19840 0.96435 0.90972 0.86986 1.22535 1.00835 0.96462 1.03573 1.60764 1.17043 1.52807 1.01109 1.22012 1.00635 0.95509 0.87485 1.22636 0.82024 0.99687 0.98072 1.87751 1.19570 1.76285 1.49133 1.19770 0.92947 0.90026 0.83567 1.21411 0.91617 1.34505 1.10785 0.91988 1.25936 1.04945 0.94070 0.94207 1.70077 1.37928 1.35303 1.13710 0.85163 0.77462 0.78379 0.78562 1.18832 1.19678 1.19783 1.19972 0.97650 0.95738 0.94898 1.21069 0.96142 0.94988 0.98538 1.21305 1.03142 1.02415 0.91279 1.17971 0.99686 0.94672 0.82418 1.91463 1.87835 1.81518 1.52186 1.21344 0.99148 0.95030 1.01423 1.21060 0.98949 1.00008 0.89954 0.91413 0.89998 0.92552 0.93946 0.89765 0.91619 0.83819 0.94090 0.87419 0.93484 0.94038 0.99800 0.99816 0.92082 0.85045 0.84590 0.82573 0.82256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 8.05 71.98 0.58 -1.58 16 2 C 0.15 3.03 0.79 2.78 0.00 3.03 16 3 C -0.18 -3.31 8.04 71.98 0.58 -2.73 16 4 N -0.69 -18.40 5.11 -473.89 -2.42 -20.82 16 5 C 0.07 1.95 5.32 86.31 0.46 2.41 16 6 C 0.05 1.91 6.28 71.98 0.45 2.36 16 7 O -0.41 -19.34 9.85 -148.98 -1.47 -20.80 16 8 C 0.21 11.88 5.69 71.24 0.41 12.29 16 9 C -0.55 -32.37 9.43 25.60 0.24 -32.13 16 10 H 0.06 3.64 7.81 -2.91 -0.02 3.61 16 11 C 0.01 0.40 5.46 84.65 0.46 0.86 16 12 N -0.93 -56.06 13.29 21.45 0.28 -55.77 16 13 Si 0.98 44.39 29.54 68.60 2.03 46.42 16 14 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 15 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 16 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 17 C -0.08 -1.73 4.77 -19.86 -0.09 -1.83 16 18 C -0.09 -2.21 9.14 22.26 0.20 -2.01 16 19 C -0.16 -3.89 10.03 22.31 0.22 -3.67 16 20 C 0.07 1.62 7.30 22.38 0.16 1.78 16 21 F -0.15 -3.63 17.27 44.97 0.78 -2.85 16 22 C -0.15 -2.68 10.03 22.31 0.22 -2.46 16 23 C -0.08 -1.36 8.71 22.26 0.19 -1.16 16 24 H 0.07 1.01 6.40 -2.39 -0.02 1.00 16 25 H 0.08 0.94 7.39 -2.39 -0.02 0.93 16 26 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.04 0.95 8.14 -2.39 -0.02 0.94 16 28 H 0.08 1.17 7.39 -2.39 -0.02 1.15 16 29 H 0.06 1.24 6.40 -2.39 -0.02 1.22 16 30 H 0.34 10.86 7.10 -89.70 -0.64 10.22 16 31 H 0.04 1.11 6.30 -2.39 -0.02 1.10 16 32 H 0.11 2.31 6.30 -2.38 -0.02 2.29 16 33 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 35 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 36 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 37 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 38 H 0.13 3.63 6.39 -2.91 -0.02 3.61 16 39 H 0.14 3.04 8.06 -2.91 -0.02 3.01 16 40 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 41 H 0.16 1.65 7.10 -2.91 -0.02 1.63 16 Total: -1.00 -66.26 337.28 3.69 -62.58 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.39 Total: 16.08 kcal Atomic # 6 Polarization: -28.92 SS G_CDS: 4.09 Total: -24.83 kcal Atomic # 7 Polarization: -74.46 SS G_CDS: -2.13 Total: -76.59 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -1.47 Total: -20.80 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.78 Total: -2.85 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -66.26 3.69 -62.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815069042.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.827 kcal (2) G-P(sol) polarization free energy of solvation -66.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds